pycom16g02660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015609
Physical Location & Seq
Forward (+)
1722458 .. 1722928
471 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGTCTGCAGCAATGGTAATCTCTGCTCTTCACTCAGCTCTGCCACCGCCGCGGCATTTCAATTCCGGCGTTAACCGAAAGATGGGGTTGCTCGAAATGCGGCGTAGGCGTCGTCCTCCGACGATTTCTGCGTCGTCGCGTGGTCATGATAATTACGACGGTAGACTTGTGGACGAGGACATGATTGTGCTTCGAATGCGAATTCACGACGCGGAGATGCAAGACGAAGACAATCACCAACCGCCGTCGAACTGGATGCAGTGGGAGAAGCAATATTATGCACACAACAACTCGGACATCTGCGAAGGCGTGGGGTTGTTGCAATCCCAATTGATGAACACCAGGCCTAGCGTGGCGTTGGGAATGCTTGCTCTTGTTATACTTAGCGTCCCAATATCCACGGTTGCTTTGATGTTTCCATTGCTGGACATTTTTAAGGGGATCTTAGGCAGTGGGAATATTCACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.56

Weight (kDa)

7.06

Isoelectric Point (pI)

63.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g32190
malus_domestica MD13G1027400.v1.1
prunus_persica Prupe.1G322500_v2.0.a1
pyrus_communis pycom16g02650 pycom16g02660
rosa_chinensis RchiOBHm_Chr4g0440931
rosa_laevigata RLG00000006139
rosa_multiflora Rmu_sc0000424.1_g000023 Rmu_sc0005054.1_g000002
rosa_roxburghii Rroxscaffold_5G00381790
rosa_rugosa Rorug04G0329300
rosa_samantha Rh4AG381200 Rh4BG394400 Rh4CG409300 Rh4DG387700
rosa_wichuraiana Rw4G032830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AccII CGCG 3 cut(s) 52, 139, 212
AciI CCGC 6 cut(s) 47, 50, 52, 100, 212, 242
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 449
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 227
AsuII TTCGAA 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 343
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 4 cut(s) 9, 50, 53, 101
BlsI GCNGC 4 cut(s) 10, 51, 54, 102
Bme1390I CCNGG 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 207, 246
BpiI GAAGAC 1 cut(s) 234
Bpu14I TTCGAA 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 50, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 2 cut(s) 18, 419
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 50, 399
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 2 cut(s) 18, 419
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 20
Bsh1236I CGCG 3 cut(s) 52, 139, 212
BshFI GGCC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 2 cut(s) 201, 369
BsnI GGCC 1 cut(s) 346
Bsp119I TTCGAA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 6 cut(s) 47, 50, 52, 100, 212, 242
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 47
BspFNI CGCG 3 cut(s) 52, 139, 212
BspHI TCATGA 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 18, 419
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 50, 399
BssMI GATC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 161, 403
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 34, 383, 445
BstDSI CCRYGG 2 cut(s) 50, 399
BstF5I GGATG 1 cut(s) 261
BstFNI CGCG 3 cut(s) 52, 139, 212
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 4 cut(s) 49, 97, 106, 196
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 6
BstUI CGCG 3 cut(s) 52, 139, 212
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 2 cut(s) 50, 399
BtsCI GGATG 1 cut(s) 261
BtsI GCAGTG 2 cut(s) 266, 457
BtsIMutI CAGTG 2 cut(s) 266, 457
Cac8I GCNNGC 1 cut(s) 369
CciI TCATGA 1 cut(s) 145
Cfr42I CCGCGG 1 cut(s) 53
CseI GACGC 4 cut(s) 98, 120, 218, 376
CviAII CATG 2 cut(s) 146, 181
CviJI RGCY 2 cut(s) 38, 346
CviKI_1 RGCY 2 cut(s) 38, 346
DdeI CTNAG 3 cut(s) 34, 383, 445
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 341
FaeI CATG 2 cut(s) 149, 184
FaiI YATR 4 cut(s) 147, 182, 279, 380
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 1 cut(s) 374
FatI CATG 2 cut(s) 145, 180
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 9, 50, 53, 101
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 4 cut(s) 9, 50, 53, 101
FspBI CTAG 1 cut(s) 348
GluI GCNGC 4 cut(s) 9, 50, 53, 101
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 66
HgaI GACGC 4 cut(s) 98, 120, 218, 376
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 2 cut(s) 149, 184
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 3 cut(s) 73, 164, 172
Hpy188I TCNGA 2 cut(s) 120, 295
Hpy188III TCNNGA 2 cut(s) 146, 206
Hpy8I GTNNAC 3 cut(s) 73, 164, 172
Hpy99I CGWCG 7 cut(s) 114, 124, 136, 139, 161, 212, 250
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 2 cut(s) 161, 403
HpyCH4V TGCA 5 cut(s) 8, 220, 259, 281, 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 97, 106, 196
HpyF3I CTNAG 3 cut(s) 34, 383, 445
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 2 cut(s) 149, 184
KspAI GTTAAC 1 cut(s) 73
KspI CCGCGG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 441
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 5 cut(s) 79, 238, 328, 355, 410
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 2 cut(s) 207, 246
MaeI CTAG 1 cut(s) 348
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 2 cut(s) 20, 239
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 441
MluCI AATT 4 cut(s) 61, 151, 201, 329
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 126, 169
MseI TTAA 2 cut(s) 72, 435
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 1 cut(s) 329
Mva1269I GAATGC 2 cut(s) 201, 369
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 3 cut(s) 52, 139, 212
MwoI GCNNNNNNNGC 4 cut(s) 49, 97, 106, 196
NdeII GATC 1 cut(s) 441
NlaIII CATG 2 cut(s) 149, 184
NspV TTCGAA 1 cut(s) 193
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PctI GAATGC 2 cut(s) 201, 369
PkrI GCNGC 4 cut(s) 10, 51, 54, 102
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 185
SacII CCGCGG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 72, 435
SatI GCNGC 4 cut(s) 9, 50, 53, 101
Sau3AI GATC 1 cut(s) 441
ScrFI CCNGG 1 cut(s) 343
SetI ASST 1 cut(s) 40
SfaNI GCATC 2 cut(s) 207, 246
SfcI CTRYAG 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 193
SgrBI CCGCGG 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 4 cut(s) 61, 151, 201, 329
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 6 cut(s) 47, 50, 52, 100, 212, 242
SspI AATATT 2 cut(s) 275, 460
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 161, 403
TaqI TCGA 3 cut(s) 93, 193, 248
TasI AATT 4 cut(s) 61, 151, 201, 329
TauI GCSGC 3 cut(s) 52, 55, 103
Tru1I TTAA 2 cut(s) 72, 435
Tru9I TTAA 2 cut(s) 72, 435
TscAI CASTG 2 cut(s) 266, 457
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 2 cut(s) 266, 457
XapI RAATTY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.