pycom16g03690

CLAVATA3 ESR (CLE)-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
2296113 .. 2296436
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGTCGTTCGCCGGTTGCTGGAGGCTTCTGCATTCTTCCCTGCTGGTTATTCTGGTCGTTTCGGCGTTACAGATTTGGGTCTGCTGCGATTGCAGGGCAGGGGCAATACGGGTATTCCCAGGAAATACAGATAATGTCATATCAAAGGTGCAGGTGGAAGCGGAGAGGAACATGATGGAGAAGAAGAGCAAGACAAGCACAGAAGCCCTGTTCCAAAAGTACTTCGGCGGAAGCACTTCCAGTTCCAACTTCAACAAAACGGAAAAAGGACATGAAGAATCCAAAAGAAGAGTGCCCAGTTGCCCAGATAAACTCCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.97

Weight (kDa)

9.12

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014327)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 2 cut(s) 161, 228
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 240, 297
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 240, 297
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 297
BspACI CCGC 2 cut(s) 161, 228
BspMI ACCTGC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 240, 297
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 179, 283
BstMWI GCNNNNNNNGC 2 cut(s) 90, 195
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 71
BveI ACCTGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 11
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 172, 272
CviJI RGCY 2 cut(s) 25, 206
CviKI_1 RGCY 2 cut(s) 25, 206
CviQI GTAC 1 cut(s) 220
Eam1104I CTCTTC 2 cut(s) 179, 283
EarI CTCTTC 2 cut(s) 179, 283
EciI GGCGGA 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 175, 275
FaiI YATR 3 cut(s) 140, 173, 273
FatI CATG 2 cut(s) 171, 271
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 322
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 40
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 175, 275
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 31, 93, 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 195
Hsp92II CATG 2 cut(s) 175, 275
LguI GCTCTTC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 66
MboII GAAGA 5 cut(s) 27, 193, 196, 287, 300
MhlI GDGCHC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 2 cut(s) 15, 159
MroXI GAANNNNTTC 1 cut(s) 235
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 90, 195
NlaIII CATG 2 cut(s) 175, 275
PaqCI CACCTGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 179
PctI GAATGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 297
SetI ASST 2 cut(s) 150, 156
SsiI CCGC 2 cut(s) 161, 228
SspMI CTAG 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 118
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 278
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 322
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.