pycom16g05090

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011043
Physical Location & Seq
Reverse (-)
3275270 .. 3278709
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1488 bp
ATGGACGGTGATCTAATGGAAGGAGAGGAAAATAGACCTAAAAGCAAGAAGGAAGTAATGAAGGAGGTTATGGCAAAAGACAAATATTATAGGGCAGAAAGAGCAAAAGATAAGGAAGAACTAGAAGATTTTAGGCAAGAATTGGACAAATCTTTCACATCTATAGTGCCCTCCAAACTGTTACAAATTGCTGAACCAGAGATGAAGATTCCGAATGAGCATTCAAAGAAGGATGAGCTTTCTGAACAGGAAAAATCCCGCTCGTATTTCAAAACTTTTGGCAACCTAGTCATGGTTAGCCGTGCTCAACCCTCAGACAGGACAAAGACACCTGAAGAGATAGCACAAGAGGAGAGAGAGCAGCTTGAGCATTTAGAGGAAGAGAGACAGAAGAGGATGCTTGCCACTGACATCAATAGCGACGATGACAATGAAGATGCTGAGAAACCATCCAACCAGAAGCCAAGACCCATATCTGGAGACGATCTTGGTGATTCCTTCTCACTTGATGAAGAGCCACGGATTAAAAAGGGTTGGGTTGATGAGATTCTAGAAAGAAATGATGCTAGTGATTCTGAGAGTGAAGAAGGCGACGCTTCTGAGGATTCAGAAAGTCCTGAGGATGACAGTGAAGGATCTGATAAAGATATTAATCTAGGTGAAAAGAGTCTATTTATGAAGGACTGGGAACAAAGTGATGATGATAATCTTGGAAATGATTTGGATGAGGAGGAAGAAGAAGAAGATGGGTCTGAAGCACATGAAGAGGATGATGATGCTGACGAAGAAGAGATGGAACCAAGAAAGCTGAAAAAAATGAAAAAAGTTGATGCTGCTGAAGCCGGTAAAAAAGAGGGTGATTTTTTAGATGCCAAGAAAATATCTCAGCACGGTAAACGACCTTCTACTCAATCAGACCTCCCATACCTAATTGAAGCTCCAAAAAGCTTCGAAGAATTAGGTGTATTGGTGGATAATCTTTCTAATGCTGACATTGTCTTGATTATCAATCGAATCCGGAAAAGCAATGCAATCAAGCTTGCAGCAGAAAACCGGAAGAAAATGCAAGTATTTTATGGTGTACTTCTGCAGTATTTTGCCATATTAGCAAATAAAAAGCCACTGAATATGGAGTTGTTAAATTTTTTGGTTAAGCCATTGATTGAGATGAGTATGGAGACTCCATACTTCGCTGCAATTTGTGCTCGTGAGAGAATTTTACGGGCTCGGACAGAATTTAGTGAGACAGTTAAGAACCCAGAAAAGAGTTGTTGGCCTTCTTCAAAGACATTATTTCTTCTGAGGCTTTGGTCCTTGATATTTCCATGCTCTGATTTTCGTCATGTGGTCATGACTCCAGCAACACTGTTGATGTGTGAATATCTGGCTCGTTGTCCTATCGTGTCTGGTCGTGATACTGCAGTTGGTTCTTTCTTGTGCTCTATGCTTCTCAGTATCGACCAAACAATCTCGGAAGTTCTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop14

Protein Analysis

496

Amino Acids

56.61

Weight (kDa)

4.6

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop14 PF04147 6 - 487 4.8e-116 Nop14-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011043)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69070 AT1G69070
fragaria_vesca FvH4_4g29570 FvH4_4g29570 FvH4_4g29570
malus_domestica MD13G1058900.v1.1 MD16G1058200.v1.1
prunus_persica Prupe.1G290900_v2.0.a1
pyrus_communis pycom16g05090
rosa_chinensis RchiOBHm_Chr4g0437801
rosa_laevigata RLG00000006412
rosa_multiflora Rmu_sc0004193.1_g000019
rosa_roxburghii Rroxscaffold_5G00378900
rosa_rugosa Rorug04G0303800 Rorug04G0303800
rosa_samantha Rh4AG356100 Rh4BG366700 Rh4CG380700 Rh4DG361200
rosa_wichuraiana Rw4G031410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 1017
AciI CCGC 1 cut(s) 259
AclWI GGATC 1 cut(s) 643
AcsI RAATTY 3 cut(s) 1141, 1215, 1235
AcuI CTGAAG 3 cut(s) 354, 774, 858
AfaI GTAC 1 cut(s) 1083
AfiI CCNNNNNNNGG 3 cut(s) 292, 318, 476
AgsI TTSAA 4 cut(s) 225, 271, 935, 1284
AluBI AGCT 6 cut(s) 238, 364, 808, 938, 948, 1039
AluI AGCT 6 cut(s) 238, 364, 808, 938, 948, 1039
Alw21I GWGCWC 3 cut(s) 307, 1207, 1442
Alw26I GTCTC 4 cut(s) 379, 474, 1172, 1238
AlwI GGATC 1 cut(s) 643
Aor13HI TCCGGA 1 cut(s) 1017
AoxI GGCC 1 cut(s) 1274
ApeKI GCWGC 4 cut(s) 361, 833, 1043, 1193
ApoI RAATTY 3 cut(s) 1141, 1215, 1235
AseI ATTAAT 1 cut(s) 651
AspS9I GGNCC 1 cut(s) 1311
AsuHPI GGTGA 4 cut(s) 20, 503, 671, 869
AsuII TTCGAA 1 cut(s) 951
AvaII GGWCC 1 cut(s) 1311
AxyI CCTNAGG 1 cut(s) 618
BaeGI GKGCMC 1 cut(s) 171
BaeI ACNNNNGTAYC 2 cut(s) 1407, 1440
BanII GRGCYC 1 cut(s) 1228
BarI GAAGNNNNNNTAC 2 cut(s) 886, 918
BauI CACGAG 1 cut(s) 1206
Bbv12I GWGCWC 3 cut(s) 307, 1207, 1442
BbvI GCAGC 4 cut(s) 373, 820, 1055, 1180
BccI CCATC 3 cut(s) 457, 740, 787
BceAI ACGGC 1 cut(s) 285
BcoDI GTCTC 4 cut(s) 379, 474, 1172, 1238
BfaI CTAG 5 cut(s) 122, 287, 551, 567, 656
BfmI CTRYAG 3 cut(s) 162, 1088, 1419
BisI GCNGC 4 cut(s) 362, 834, 1044, 1194
BlsI GCNGC 4 cut(s) 363, 835, 1045, 1195
Bme18I GGWCC 1 cut(s) 1311
BmgT120I GGNCC 1 cut(s) 1311
BmiI GGNNCC 1 cut(s) 798
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 6 cut(s) 387, 427, 553, 766, 820, 859
BmuI ACTGGG 1 cut(s) 694
BpmI CTGGAG 2 cut(s) 498, 1341
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 386
BsaBI GATNNNNATC 2 cut(s) 651, 705
BsaJI CCNNGG 1 cut(s) 518
BsaWI WCCGGW 2 cut(s) 1017, 1053
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 318, 476
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 1 cut(s) 689
Bse21I CCTNAGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 1033
Bse8I GATNNNNATC 2 cut(s) 651, 705
BseAI TCCGGA 1 cut(s) 1017
BseDI CCNNGG 1 cut(s) 518
BseGI GGATG 6 cut(s) 238, 402, 449, 628, 730, 775
BseJI GATNNNNATC 2 cut(s) 651, 705
BseLI CCNNNNNNNGG 3 cut(s) 292, 318, 476
BseMI GCAATG 1 cut(s) 1033
BseMII CTCAG 8 cut(s) 327, 432, 567, 591, 609, 899, 1292, 1465
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 2 cut(s) 365, 743
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 4 cut(s) 373, 820, 1055, 1180
BshFI GGCC 1 cut(s) 1276
BsiHKAI GWGCWC 3 cut(s) 307, 1207, 1442
BsiSI CCGG 3 cut(s) 843, 1018, 1054
BslI CCNNNNNNNGG 3 cut(s) 292, 318, 476
BsmAI GTCTC 4 cut(s) 379, 474, 1172, 1238
BsmBI CGTCTC 1 cut(s) 474
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 1 cut(s) 1276
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 5 cut(s) 171, 307, 1207, 1228, 1442
Bsp13I TCCGGA 1 cut(s) 1017
Bsp143I GATC 3 cut(s) 10, 484, 635
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 1276
BspCNI CTCAG 8 cut(s) 326, 433, 568, 592, 610, 898, 1293, 1464
BspEI TCCGGA 1 cut(s) 1017
BspHI TCATGA 1 cut(s) 1350
BspLI GGNNCC 1 cut(s) 798
BspMAI CTGCAG 2 cut(s) 1092, 1423
BspPI GGATC 1 cut(s) 643
BspQI GCTCTTC 1 cut(s) 507
BspT104I TTCGAA 1 cut(s) 951
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 1033
BsrFI RCCGGY 1 cut(s) 842
BsrI ACTGG 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 1 cut(s) 518
BssMI GATC 3 cut(s) 10, 484, 635
BssSI CACGAG 1 cut(s) 1206
Bst2BI CACGAG 1 cut(s) 1206
Bst4CI ACNGT 6 cut(s) 8, 180, 629, 893, 1249, 1368
Bst6I CTCTTC 6 cut(s) 330, 375, 386, 507, 759, 783
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 2 cut(s) 402, 1041
BstDEI CTNAG 8 cut(s) 313, 441, 576, 600, 618, 885, 1301, 1451
BstDSI CCRYGG 1 cut(s) 518
BstENI CCTNNNNNAGG 1 cut(s) 316
BstF5I GGATG 6 cut(s) 238, 402, 449, 628, 730, 775
BstKTI GATC 3 cut(s) 13, 487, 638
BstMAI GTCTC 4 cut(s) 379, 474, 1172, 1238
BstMBI GATC 3 cut(s) 10, 484, 635
BstMWI GCNNNNNNNGC 5 cut(s) 101, 367, 839, 1106, 1202
BstSFI CTRYAG 3 cut(s) 162, 1088, 1419
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 4 cut(s) 373, 820, 1055, 1180
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
Bsu36I CCTNAGG 1 cut(s) 618
BsuRI GGCC 1 cut(s) 1276
BtgI CCRYGG 1 cut(s) 518
BtsCI GGATG 6 cut(s) 238, 402, 449, 628, 730, 775
BtsIMutI CAGTG 4 cut(s) 405, 634, 1121, 1364
Cac8I GCNNGC 2 cut(s) 402, 1041
CciI TCATGA 1 cut(s) 1350
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 1 cut(s) 1311
CseI GACGC 1 cut(s) 602
Csp6I GTAC 1 cut(s) 1082
CviAII CATG 5 cut(s) 292, 761, 1326, 1343, 1351
CviQI GTAC 1 cut(s) 1082
DdeI CTNAG 8 cut(s) 313, 441, 576, 600, 618, 885, 1301, 1451
DpnI GATC 3 cut(s) 12, 486, 637
DpnII GATC 3 cut(s) 10, 484, 635
Eam1104I CTCTTC 6 cut(s) 330, 375, 386, 507, 759, 783
EarI CTCTTC 6 cut(s) 330, 375, 386, 507, 759, 783
Eco24I GRGCYC 1 cut(s) 1228
Eco47I GGWCC 1 cut(s) 1311
Eco57I CTGAAG 3 cut(s) 354, 774, 858
Eco81I CCTNAGG 1 cut(s) 618
EcoNI CCTNNNNNAGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 1228
Esp3I CGTCTC 1 cut(s) 474
FaeI CATG 5 cut(s) 295, 764, 1329, 1346, 1354
FatI CATG 5 cut(s) 291, 760, 1325, 1342, 1350
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 362, 834, 1044, 1194
FokI GGATG 6 cut(s) 245, 409, 436, 635, 737, 782
FriOI GRGCYC 1 cut(s) 1228
Fsp4HI GCNGC 4 cut(s) 362, 834, 1044, 1194
FspBI CTAG 5 cut(s) 122, 287, 551, 567, 656
GluI GCNGC 4 cut(s) 362, 834, 1044, 1194
GsuI CTGGAG 2 cut(s) 498, 1341
HaeIII GGCC 1 cut(s) 1276
HapII CCGG 3 cut(s) 843, 1018, 1054
HgaI GACGC 1 cut(s) 602
Hin1II CATG 5 cut(s) 295, 764, 1329, 1346, 1354
HindIII AAGCTT 2 cut(s) 946, 1037
HinfI GANTC 9 cut(s) 208, 494, 547, 572, 605, 667, 1014, 1180, 1354
HpaII CCGG 3 cut(s) 843, 1018, 1054
HphI GGTGA 4 cut(s) 20, 503, 671, 869
Hpy166II GTNNAC 2 cut(s) 896, 1082
Hpy188III TCNNGA 9 cut(s) 477, 551, 617, 1000, 1018, 1208, 1351, 1412, 1485
Hpy8I GTNNAC 2 cut(s) 896, 1082
Hpy99I CGWCG 2 cut(s) 425, 596
HpyCH4III ACNGT 6 cut(s) 8, 180, 629, 893, 1249, 1368
HpyCH4V TGCA 6 cut(s) 1031, 1043, 1066, 1090, 1196, 1421
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 367, 839, 1106, 1202
HpyF3I CTNAG 8 cut(s) 313, 441, 576, 600, 618, 885, 1301, 1451
Hsp92II CATG 5 cut(s) 295, 764, 1329, 1346, 1354
Kpn2I TCCGGA 1 cut(s) 1017
Kzo9I GATC 3 cut(s) 10, 484, 635
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 943
Lsp1109I GCAGC 4 cut(s) 373, 820, 1055, 1180
LweI GCATC 6 cut(s) 387, 427, 553, 766, 820, 859
MaeI CTAG 5 cut(s) 122, 287, 551, 567, 656
MaeIII GTNAC 1 cut(s) 180
MalI GATC 3 cut(s) 12, 486, 637
MbiI CCGCTC 1 cut(s) 261
MboI GATC 3 cut(s) 10, 484, 635
MflI RGATCY 1 cut(s) 635
MhlI GDGCHC 5 cut(s) 171, 307, 1207, 1228, 1442
MluCI AATT 8 cut(s) 140, 186, 930, 956, 1141, 1197, 1215, 1235
MlyI GAGTC 3 cut(s) 676, 1174, 1348
MmeI TCCRAC 1 cut(s) 477
MroI TCCGGA 1 cut(s) 1017
MseI TTAA 5 cut(s) 525, 651, 1139, 1152, 1251
MspI CCGG 3 cut(s) 843, 1018, 1054
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 5 cut(s) 101, 367, 839, 1106, 1202
NdeII GATC 3 cut(s) 10, 484, 635
NlaIII CATG 5 cut(s) 295, 764, 1329, 1346, 1354
NlaIV GGNNCC 1 cut(s) 798
NspV TTCGAA 1 cut(s) 951
PagI TCATGA 1 cut(s) 1350
PciSI GCTCTTC 1 cut(s) 507
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 6 cut(s) 208, 494, 547, 572, 605, 1014
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 4 cut(s) 363, 835, 1045, 1195
PleI GAGTC 3 cut(s) 675, 1174, 1348
PpsI GAGTC 3 cut(s) 675, 1174, 1348
PshBI ATTAAT 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 1 cut(s) 1311
PstI CTGCAG 2 cut(s) 1092, 1423
PsuI RGATCY 1 cut(s) 635
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 1 cut(s) 1083
RsaNI GTAC 1 cut(s) 1082
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 5 cut(s) 525, 651, 1139, 1152, 1251
SatI GCNGC 4 cut(s) 362, 834, 1044, 1194
Sau3AI GATC 3 cut(s) 10, 484, 635
Sau96I GGNCC 1 cut(s) 1311
SchI GAGTC 3 cut(s) 676, 1174, 1348
SduI GDGCHC 5 cut(s) 171, 307, 1207, 1228, 1442
SfaNI GCATC 6 cut(s) 387, 427, 553, 766, 820, 859
SfcI CTRYAG 3 cut(s) 162, 1088, 1419
SfuI TTCGAA 1 cut(s) 951
SinI GGWCC 1 cut(s) 1311
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 8 cut(s) 140, 186, 930, 956, 1141, 1197, 1215, 1235
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 86
SspMI CTAG 5 cut(s) 122, 287, 551, 567, 656
TaaI ACNGT 6 cut(s) 8, 180, 629, 893, 1249, 1368
TaqI TCGA 3 cut(s) 951, 1012, 1458
TasI AATT 8 cut(s) 140, 186, 930, 956, 1141, 1197, 1215, 1235
TatI WGTACW 1 cut(s) 1081
TfiI GAWTC 6 cut(s) 208, 494, 547, 572, 605, 1014
Tru1I TTAA 5 cut(s) 525, 651, 1139, 1152, 1251
Tru9I TTAA 5 cut(s) 525, 651, 1139, 1152, 1251
TscAI CASTG 4 cut(s) 412, 634, 1128, 1371
TseI GCWGC 4 cut(s) 361, 833, 1043, 1193
TspDTI ATGAA 7 cut(s) 74, 218, 447, 525, 692, 777, 833
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 4 cut(s) 412, 634, 1128, 1371
Tth111I GACNNNGTC 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 1311
VspI ATTAAT 1 cut(s) 651
XagI CCTNNNNNAGG 1 cut(s) 316
XapI RAATTY 3 cut(s) 1141, 1215, 1235
XbaI TCTAGA 1 cut(s) 550
XspI CTAG 5 cut(s) 122, 287, 551, 567, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.