Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010355

Physical Location & Seq

Genomic Coordinates Forward (+)

3685520 .. 3687053

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGCTTTTTGGGGATCTGAGGGTCACGGCGACGCTGACTTCTCACTCGACGCACTCTCTCCGAACCCTTTTGCCCATTTCAAAGGTAGAATTTGCTAGCTTTCCAAATGGAGGGCCTTGCGTTTCTGAGATTATGCCGAAGTGGCCCAGTATGTCATTTGATAGACGTAATATTCGTCAACATTCCAGGCGGTTGGCTGGAGATTTTCAATTGTCATCGAACTCAAGTTGCCAGGATTCCGAGAGCTTCCTCCTCAATGCCATCAACATGAGTTTCTTTGACCGTTTAAACTTGGCTTGGAAGATACTATTCCCGTCTCCAACATCTAGAAGGAGCTCTAATGCTAACATTGCCAAGCAGCGCTTGAAGATCGATCCTATTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

130

Amino Acids

14.54

Weight (kDa)

10.48

Isoelectric Point (pI)

79.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69390
fragaria_vesca	FvH4_4g30590
malus_domestica	MD16G1066100.v1.1
prunus_persica	Prupe.1G281100_v2.0.a1
pyrus_communis	pycom13g05910 pycom16g05760
rosa_chinensis	RchiOBHm_Chr4g0438981 RchiOBHm_Chr5g0013451
rosa_laevigata	RLG00000006313
rosa_multiflora	Rmu_sc0005887.1_g000007 Rmu_sc0018732.1_g000001 Rmu_sc0023005.1_g000005 Rmu_sc0023254.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380000
rosa_rugosa	Rorug04G0314900
rosa_samantha	Rh4AG365500 Rh4BG376700 Rh4CG390800 Rh4DG371400
rosa_wichuraiana	Rw0G007380 Rw0G016930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	2 cut(s)	24, 371
AcsI	RAATTY	1 cut(s)	92
AfeI	AGCGCT	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	84, 212, 370
AjnI	CCWGG	2 cut(s)	188, 234
AluBI	AGCT	3 cut(s)	102, 249, 339
AluI	AGCT	3 cut(s)	102, 249, 339
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	24, 371
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	2 cut(s)	116, 146
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AspLEI	GCGC	2 cut(s)	7, 366
AspS9I	GGNCC	2 cut(s)	116, 147
AsuNHI	GCTAGC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	190, 236
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	99, 330
BfoI	RGCGCY	2 cut(s)	8, 367
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	190, 236
BmgT120I	GGNCC	2 cut(s)	116, 147
BmrFI	CCNGG	2 cut(s)	190, 236
BmrI	ACTGGG	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	190, 236
BseCI	ATCGAT	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	11, 120
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	2 cut(s)	118, 148
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	324
BsmBI	CGTCTC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	118, 148
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	16, 372, 376
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	118, 148
BspCNI	CTCAG	2 cut(s)	12, 121
BspDI	ATCGAT	1 cut(s)	375
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	24, 371
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	16, 372, 376
Bst2UI	CCWGG	2 cut(s)	190, 236
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	20, 129
BstH2I	RGCGCY	2 cut(s)	8, 367
BstHHI	GCGC	2 cut(s)	7, 366
BstKTI	GATC	3 cut(s)	19, 375, 379
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	3 cut(s)	16, 372, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 353
BstNI	CCWGG	2 cut(s)	190, 236
BstSCI	CCNGG	2 cut(s)	188, 234
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	118, 148
BsuTUI	ATCGAT	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	2 cut(s)	7, 366
Cfr13I	GGNCC	2 cut(s)	116, 147
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	2 cut(s)	43, 61
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	7 cut(s)	102, 118, 148, 200, 249, 299, 339
CviKI_1	RGCY	7 cut(s)	102, 118, 148, 200, 249, 299, 339
DdeI	CTNAG	2 cut(s)	20, 129
DpnI	GATC	3 cut(s)	18, 374, 378
DpnII	GATC	3 cut(s)	16, 372, 376
DraI	TTTAAA	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	341
Eco47III	AGCGCT	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	188, 234
EcoT38I	GRGCYC	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	137, 155, 272
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	99, 330
GlaI	GCGC	2 cut(s)	6, 365
GluI	GCNGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	2 cut(s)	8, 367
HaeIII	GGCC	2 cut(s)	118, 148
HgaI	GACGC	2 cut(s)	43, 61
HhaI	GCGC	2 cut(s)	7, 366
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	2 cut(s)	5, 364
HinP1I	GCGC	2 cut(s)	5, 364
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	5 cut(s)	21, 65, 130, 244, 389
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	182
Hpy99I	CGWCG	2 cut(s)	37, 55
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 353
HpyF3I	CTNAG	2 cut(s)	20, 129
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	2 cut(s)	5, 364
Kzo9I	GATC	3 cut(s)	16, 372, 376
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	6 cut(s)	163, 175, 186, 202, 221, 248
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	99, 330
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	18, 374, 378
MboI	GATC	3 cut(s)	16, 372, 376
MboII	GAAGA	2 cut(s)	316, 382
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	2 cut(s)	92, 212
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	4 cut(s)	15, 107, 263, 266
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	190, 236
MssI	GTTTAAAC	1 cut(s)	291
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	2 cut(s)	190, 236
MwoI	GCNNNNNNNGC	2 cut(s)	145, 353
NdeII	GATC	3 cut(s)	16, 372, 376
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	363
PmeI	GTTTAAAC	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	188, 234
PspGI	CCWGG	2 cut(s)	188, 234
PspPI	GGNCC	2 cut(s)	116, 147
PsuI	RGATCY	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	3 cut(s)	16, 372, 376
Sau96I	GGNCC	2 cut(s)	116, 147
ScrFI	CCNGG	2 cut(s)	190, 236
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	5 cut(s)	90, 104, 172, 251, 341
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	92, 212
SsiI	CCGC	1 cut(s)	193
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	2 cut(s)	99, 330
SstI	GAGCTC	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	188, 234
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	50, 221, 375
TasI	AATT	2 cut(s)	92, 212
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	92
XbaI	TCTAGA	1 cut(s)	329
XspI	CTAG	2 cut(s)	99, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.