Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0016967

Physical Location & Seq

Genomic Coordinates Forward (+)

3759602 .. 3760333

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCTTCATCGTATCTCCCAGCAACTACTGATTCGATTGCTCAGGCTTTAGAGGCCAACGCTCCATCTGAATCCATCTCTATTCTTTATCGCGTTCTTGAAAACCCATCAGCATCTCCTGAAGCTATACGGATAAAGGAGCAGGCCATCACAAATCTTTCGGATCTTCTAAGACAAGAAAATCGGGCAGATGATCTTCGTAACCTTCTCACTCAGTTGAGGCCTTTTTTTAACTTGATTCCCAAGGCGAAAACTGCAAAAATTGTCCGCATTATTATTGATGCACTTGCTAAGATACCAGACACGTCAGAACTTCAGATTTCCCTTTGCAAAGAAATGGTGCAGTGGACCCGTGCTGAGAAGCGAACTTTCCTTAGACAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAAGAGTTTTCGGAAGCACTAACTCTCCTATCAGGCTTGATCAAGGAAGTGAGAAGGCTAGATGACAAGCTTCTCCTTGTGGACATAGATTTGTTGGAGAGTAAGCTCCACTTTTCTTTGAGAAATCTCCCTAAAGCCAAGGCTTCACTCACAGCTGCAAGAACAGCCGCCAATTCTATATATGTGCCTCCAGCTCAGCAAGGAACTATTGATTTGCAGAGCGGGATCCTTCATGCAGAAGAGAAGGACTACAAGACTGCATACAGTTATTTCTTTGAAGCATTTGAAGCCTTCAATGCTCACCACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

244

Amino Acids

27.36

Weight (kDa)

6.93

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_N	PF18055	14 - 128	3.5e-35	26S proteasome regulatory subunit RPN6 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016967)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05860
rosa_chinensis	RchiOBHm_Chr6g0255441
rosa_laevigata	RLG00000020288
rosa_multiflora	Rmu_co8401755.1_g000001 Rmu_sc0002360.1_g000011 Rmu_sc0006904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353690
rosa_rugosa	Rorug02G0166000 Rorug05G0316600 Rorug05G0475100 Rorug05G0558700
rosa_samantha	Rh6AG075000 Rh6BG068700 Rh6BG069300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	642
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	268, 588, 642
AclWI	GGATC	3 cut(s)	171, 640, 653
AcuI	CTGAAG	2 cut(s)	141, 299
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	101, 698, 707, 715
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	5 cut(s)	125, 490, 526, 575, 614
AluI	AGCT	5 cut(s)	125, 490, 526, 575, 614
AlwI	GGATC	3 cut(s)	171, 640, 653
AoxI	GGCC	4 cut(s)	54, 144, 221, 390
ApeKI	GCWGC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	5 cut(s)	73, 83, 115, 155, 406
BciT130I	CCWGG	1 cut(s)	394
BclI	TGATCA	1 cut(s)	459
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	2 cut(s)	576, 588
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	2 cut(s)	577, 589
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	348
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	350, 647
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	3 cut(s)	122, 271, 410
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	243, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	243, 558
BseMII	CTCAG	4 cut(s)	56, 227, 348, 629
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	4 cut(s)	56, 146, 223, 392
BsnI	GGCC	4 cut(s)	56, 146, 223, 392
Bsp143I	GATC	4 cut(s)	163, 193, 459, 645
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	3 cut(s)	268, 588, 642
BspANI	GGCC	4 cut(s)	56, 146, 223, 392
BspCNI	CTCAG	4 cut(s)	55, 226, 349, 628
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	350, 647
BspPI	GGATC	3 cut(s)	171, 640, 653
BsrBI	CCGCTC	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	243, 558
BssMI	GATC	4 cut(s)	163, 193, 459, 645
BssT1I	CCWWGG	2 cut(s)	243, 558
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	654
BstC8I	GCNNGC	2 cut(s)	144, 399
BstDEI	CTNAG	7 cut(s)	42, 170, 213, 291, 357, 374, 615
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	4 cut(s)	166, 196, 462, 648
BstMBI	GATC	4 cut(s)	163, 193, 459, 645
BstMWI	GCNNNNNNNGC	6 cut(s)	53, 254, 398, 584, 707, 716
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	392
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	562
BstX2I	RGATCY	2 cut(s)	163, 645
BstYI	RGATCY	2 cut(s)	163, 645
BsuRI	GGCC	4 cut(s)	56, 146, 223, 392
BtrI	CACGTC	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	144, 399
Cfr13I	GGNCC	1 cut(s)	348
CviAII	CATG	1 cut(s)	653
DdeI	CTNAG	7 cut(s)	42, 170, 213, 291, 357, 374, 615
DpnI	GATC	4 cut(s)	165, 195, 461, 647
DpnII	GATC	4 cut(s)	163, 193, 459, 645
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	2 cut(s)	243, 558
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	348
Eco57I	CTGAAG	2 cut(s)	141, 299
EcoRII	CCWGG	1 cut(s)	392
EcoT14I	CCWWGG	2 cut(s)	243, 558
ErhI	CCWWGG	2 cut(s)	243, 558
FaeI	CATG	1 cut(s)	656
FaiI	YATR	7 cut(s)	128, 506, 599, 601, 603, 654, 682
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FatI	CATG	1 cut(s)	652
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	576, 588
Fsp4HI	GCNGC	2 cut(s)	576, 588
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	2 cut(s)	576, 588
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	4 cut(s)	56, 146, 223, 392
Hin1II	CATG	1 cut(s)	656
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	32, 71, 238
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	2 cut(s)	348, 502
Hpy188I	TCNGA	5 cut(s)	70, 163, 310, 318, 433
Hpy188III	TCNNGA	2 cut(s)	98, 119
Hpy8I	GTNNAC	2 cut(s)	348, 502
HpyAV	CCTTC	5 cut(s)	215, 468, 658, 659, 721
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	9 cut(s)	257, 284, 330, 343, 401, 578, 637, 656, 680
HpyF10VI	GCNNNNNNNGC	6 cut(s)	53, 254, 398, 584, 707, 716
HpyF3I	CTNAG	7 cut(s)	42, 170, 213, 291, 357, 374, 615
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	4 cut(s)	163, 193, 459, 645
LmnI	GCTCC	3 cut(s)	67, 139, 531
LpnPI	CCDG	9 cut(s)	29, 33, 128, 132, 312, 379, 406, 438, 624
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	3 cut(s)	122, 271, 410
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	4 cut(s)	165, 195, 461, 647
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	4 cut(s)	163, 193, 459, 645
MboII	GAAGA	3 cut(s)	158, 188, 671
MflI	RGATCY	2 cut(s)	163, 645
MluCI	AATT	2 cut(s)	261, 592
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	4 cut(s)	46, 213, 382, 618
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	6 cut(s)	53, 254, 398, 584, 707, 716
NdeII	GATC	4 cut(s)	163, 193, 459, 645
NlaIII	CATG	1 cut(s)	656
NlaIV	GGNNCC	2 cut(s)	350, 647
PceI	AGGCCT	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	32, 71, 238
PkrI	GCNGC	2 cut(s)	577, 589
Psp6I	CCWGG	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	350, 647
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	2 cut(s)	163, 645
PvuII	CAGCTG	1 cut(s)	575
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	576, 588
Sau3AI	GATC	4 cut(s)	163, 193, 459, 645
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	394
SetI	ASST	7 cut(s)	127, 207, 308, 492, 528, 577, 616
SfaNI	GCATC	3 cut(s)	122, 271, 410
SinI	GGWCC	1 cut(s)	348
Sse9I	AATT	2 cut(s)	261, 592
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	3 cut(s)	268, 588, 642
SspMI	CTAG	1 cut(s)	479
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	243, 558
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	261, 592
TauI	GCSGC	1 cut(s)	590
TfiI	GAWTC	3 cut(s)	32, 71, 238
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	641
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	348
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.