Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016967

Physical Location & Seq

Genomic Coordinates Forward (+)

10561177 .. 10564279

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG069300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGATGCTCTTGAATTCTTGAAACTTAAAGCATTTGGAGCAGTTGCAGCAGCTGGAGTTGGTGATGAAAGCATGTGGAGCAGCTGCACCCAGCTATCTCAGCTTGCGAGTAAACCTGCAACGTTGGAAACAATATCTAACATGGGCAAACTTGTTGATAGCTTGTATGTGTGGTCTGTCAAGATAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

64

Amino Acids

6.81

Weight (kDa)

4.99

Isoelectric Point (pI)

21.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_C_helix	PF18503	39 - 56	6.1e-07	26S proteasome subunit RPN6 C-terminal helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016967)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05860
rosa_chinensis	RchiOBHm_Chr6g0255441
rosa_laevigata	RLG00000020288
rosa_multiflora	Rmu_co8401755.1_g000001 Rmu_sc0002360.1_g000011 Rmu_sc0006904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353690
rosa_rugosa	Rorug02G0166000 Rorug05G0316600 Rorug05G0475100 Rorug05G0558700
rosa_samantha	Rh6AG075000 Rh6BG068700 Rh6BG069300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AclI	AACGTT	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	14, 22
AluBI	AGCT	5 cut(s)	53, 84, 94, 103, 162
AluI	AGCT	5 cut(s)	53, 84, 94, 103, 162
AlwNI	CAGNNNCTG	1 cut(s)	53
ApeKI	GCWGC	4 cut(s)	47, 50, 81, 84
ApoI	RAATTY	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	59, 62, 71, 93
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	4 cut(s)	48, 51, 82, 85
BlsI	GCNGC	4 cut(s)	49, 52, 83, 86
BpmI	CTGGAG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	59, 62, 71, 93
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 78, 100
BstNSI	RCATGY	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	59, 62, 71, 93
BtsCI	GGATG	1 cut(s)	10
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	53
CviAII	CATG	3 cut(s)	73, 142, 192
CviJI	RGCY	5 cut(s)	53, 84, 94, 103, 162
CviKI_1	RGCY	5 cut(s)	53, 84, 94, 103, 162
DdeI	CTNAG	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	76, 145, 195
FaiI	YATR	4 cut(s)	74, 143, 168, 193
FatI	CATG	3 cut(s)	72, 141, 191
Fnu4HI	GCNGC	4 cut(s)	48, 51, 82, 85
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	48, 51, 82, 85
GluI	GCNGC	4 cut(s)	48, 51, 82, 85
GsaI	CCCAGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	75
Hin1II	CATG	3 cut(s)	76, 145, 195
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	11, 19, 181
Hpy8I	GTNNAC	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	47, 87, 119
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 78, 100
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	76, 145, 195
LmnI	GCTCC	2 cut(s)	38, 78
LpnPI	CCDG	3 cut(s)	39, 104, 129
Lsp1109I	GCAGC	4 cut(s)	59, 62, 71, 93
MaeII	ACGT	1 cut(s)	122
MluCI	AATT	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	105
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	53, 84
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 78, 100
NlaIII	CATG	3 cut(s)	76, 145, 195
NspI	RCATGY	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	49, 52, 83, 86
Psp1406I	AACGTT	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	53
PvuII	CAGCTG	2 cut(s)	53, 84
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	4 cut(s)	48, 51, 82, 85
SetI	ASST	7 cut(s)	55, 86, 96, 105, 118, 125, 164
Sse9I	AATT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	125
TasI	AATT	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	4 cut(s)	47, 50, 81, 84
TspDTI	ATGAA	1 cut(s)	81
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.