Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016967

Physical Location & Seq

Genomic Coordinates Reverse (-)

74793727 .. 74797595

Gene Structure 3869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0558700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTCTTCGTTCTGTGCTTGGAAAGATGGGGAGAACTATGACTATGACGAGTGGCAAATGTATTCACAAAAATGGTAGACTAGTTTTGAAGCTTGGGAATTTTGAGGCTGAAGCTATCAACCACAAAAACAATAACAATAATAAGGATGCTCCTTCGAAGGATGATCCTCTTACTGCTTATCTCTTTGAAATGGGTTGTTATAATGAAAATGGGATTCTAATTCCAATGACTGTTAATAGGGGGATTGATTATCATATGGATTTGGGGGGCATAGGACCTGCCCGTTTTGCTGTGGAAGAGTTCAACAAGAGGAAGAAAACCCAACTGCAATTTGTGAGAGTGCAGAGAACCTGGATGAAGCCGCTGTATCATCATAAATGTATGTATAAACTACTACTGGATGCAGCTGATGCCGCCGGTGTGGTGAACTTTTACCTAGCATATGTTGAGATAGATGATATAAATGAAGGAATGTGGTTGAAAGAATTCAATATTTTCCGTGATAATGGATACCCTTCAAGACTATATCATCACCTAGACAACTTCTTTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

186

Amino Acids

21.49

Weight (kDa)

8.68

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016967)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05860
rosa_chinensis	RchiOBHm_Chr6g0255441
rosa_laevigata	RLG00000020288
rosa_multiflora	Rmu_co8401755.1_g000001 Rmu_sc0002360.1_g000011 Rmu_sc0006904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353690
rosa_rugosa	Rorug02G0166000 Rorug05G0316600 Rorug05G0475100 Rorug05G0558700
rosa_samantha	Rh6AG075000 Rh6BG068700 Rh6BG069300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	2 cut(s)	365, 417
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	2 cut(s)	100, 488
AcuI	CTGAAG	1 cut(s)	132
AgsI	TTSAA	7 cut(s)	91, 191, 307, 484, 493, 522, 557
AhlI	ACTAGT	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	3 cut(s)	94, 116, 410
AluI	AGCT	3 cut(s)	94, 116, 410
AlwI	GGATC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	100, 488
ArsI	GACNNNNNNTTYG	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	439, 527
AsuII	TTCGAA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	355
BciVI	GTATCC	1 cut(s)	506
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	3 cut(s)	83, 440, 539
BfuAI	ACCTGC	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	506
BisI	GCNGC	3 cut(s)	365, 408, 417
BlsI	GCNGC	3 cut(s)	366, 409, 418
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	3 cut(s)	139, 394, 403
Bpu14I	TTCGAA	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	355
BseGI	GGATG	4 cut(s)	154, 169, 363, 409
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	365, 417
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	161
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	419
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	12, 294
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBI	TTCGAA	1 cut(s)	158
BstF5I	GGATG	4 cut(s)	154, 169, 363, 409
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 413, 416
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	506
BtsCI	GGATG	4 cut(s)	154, 169, 363, 409
BveI	ACCTGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	278
CviJI	RGCY	6 cut(s)	5, 94, 110, 116, 364, 410
CviKI_1	RGCY	6 cut(s)	5, 94, 110, 116, 364, 410
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	12, 294
EarI	CTCTTC	2 cut(s)	12, 294
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	353
FauNDI	CATATG	2 cut(s)	258, 445
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	365, 408, 417
FokI	GGATG	4 cut(s)	161, 176, 370, 416
Fsp4HI	GCNGC	3 cut(s)	365, 408, 417
FspBI	CTAG	3 cut(s)	83, 440, 539
GluI	GCNGC	3 cut(s)	365, 408, 417
HapII	CCGG	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	2 cut(s)	439, 527
Hpy166II	GTNNAC	2 cut(s)	80, 430
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	2 cut(s)	80, 430
HpyAV	CCTTC	4 cut(s)	154, 165, 464, 528
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	331, 346, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 413, 416
Kzo9I	GATC	1 cut(s)	166
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	294, 340, 367, 386, 433
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	3 cut(s)	139, 394, 403
MaeI	CTAG	3 cut(s)	83, 440, 539
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	311, 328
MluCI	AATT	4 cut(s)	100, 222, 332, 488
MnlI	CCTC	3 cut(s)	100, 180, 306
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	367, 410
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	3 cut(s)	290, 413, 416
NdeI	CATATG	2 cut(s)	258, 445
NdeII	GATC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	366, 409, 418
PpuMI	RGGWCCY	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	278
PspPPI	RGGWCCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	365, 408, 417
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	7 cut(s)	96, 118, 283, 356, 412, 441, 540
SfaNI	GCATC	3 cut(s)	139, 394, 403
SfuI	TTCGAA	1 cut(s)	158
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	4 cut(s)	100, 222, 332, 488
SsiI	CCGC	2 cut(s)	365, 417
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	83, 440, 539
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	158
TasI	AATT	4 cut(s)	100, 222, 332, 488
TauI	GCSGC	2 cut(s)	367, 419
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	222, 374, 483
TspGWI	ACGGA	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	100, 488
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	83, 440, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.