Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016967

Physical Location & Seq

Genomic Coordinates Reverse (-)

10605446 .. 10605793

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG075000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCTTCAGCATACCTCCCTGCAACTACTGAATCGATTGCTCAGGCTTTAGAGGCCAAATCTCCATCTGAAGCCATCTCTATTATTTACTGTGTTCTTGAAAACCCGTCATCTTCTTCTGCAGCTCTACAAATAAAGGAACAGGCTATAACAAATTTTTTGGATCTCCTTAGGCATGAAAAGCGAGCAGAGGATCTCTGTAACCTTCTCACCCAGCTGAGGCCTTTCTTCAACTTGATTCCAAAGGCAAAGACTGCAAAGATTGTCGGTGGCATTATTGATGCAGTAGCTGAAGTACCAGGCACATCTGATCTTCAGATTTCCCTTTGCAAGGAAATGGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

115

Amino Acids

12.43

Weight (kDa)

5.07

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_N	PF18055	14 - 115	1.6e-23	26S proteasome regulatory subunit RPN6 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016967)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05860
rosa_chinensis	RchiOBHm_Chr6g0255441
rosa_laevigata	RLG00000020288
rosa_multiflora	Rmu_co8401755.1_g000001 Rmu_sc0002360.1_g000011 Rmu_sc0006904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353690
rosa_rugosa	Rorug02G0166000 Rorug05G0316600 Rorug05G0475100 Rorug05G0558700
rosa_samantha	Rh6AG075000 Rh6BG068700 Rh6BG069300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	171, 201
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	3 cut(s)	90, 299, 312
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	219, 331
AgsI	TTSAA	2 cut(s)	101, 232
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	125, 217, 290
AluI	AGCT	3 cut(s)	125, 217, 290
AlwI	GGATC	2 cut(s)	171, 201
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	54, 221
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	2 cut(s)	73, 83
BciT130I	CCWGG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	271
Bpu10I	CCTNAGC	2 cut(s)	42, 218
Bsa29I	ATCGAT	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 331
Bse21I	CCTNAGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	300
BseCI	ATCGAT	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	219, 331
BseMII	CTCAG	2 cut(s)	56, 209
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	56, 223
BshVI	ATCGAT	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	219, 331
BsnI	GGCC	2 cut(s)	56, 223
Bsp143I	GATC	3 cut(s)	163, 193, 310
BspANI	GGCC	2 cut(s)	56, 223
BspCNI	CTCAG	2 cut(s)	55, 210
BspDI	ATCGAT	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	2 cut(s)	171, 201
BssMI	GATC	3 cut(s)	163, 193, 310
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	42, 170, 218
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstKTI	GATC	3 cut(s)	166, 196, 313
BstMBI	GATC	3 cut(s)	163, 193, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 181, 254
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	163, 193
BstYI	RGATCY	2 cut(s)	163, 193
Bsu15I	ATCGAT	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	56, 223
BsuTUI	ATCGAT	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	8 cut(s)	47, 56, 74, 125, 146, 217, 223, 290
CviKI_1	RGCY	8 cut(s)	47, 56, 74, 125, 146, 217, 223, 290
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	3 cut(s)	42, 170, 218
DpnI	GATC	3 cut(s)	165, 195, 312
DpnII	GATC	3 cut(s)	163, 193, 310
Eco147I	AGGCCT	1 cut(s)	223
Eco57I	CTGAAG	3 cut(s)	90, 299, 312
Eco81I	CCTNAGG	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	13, 149, 177
FatI	CATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	56, 223
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	2 cut(s)	32, 238
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	70, 310, 318
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	6 cut(s)	23, 122, 257, 284, 330, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 181, 254
HpyF3I	CTNAG	3 cut(s)	42, 170, 218
Hsp92II	CATG	1 cut(s)	179
Kzo9I	GATC	3 cut(s)	163, 193, 310
LpnPI	CCDG	6 cut(s)	29, 33, 128, 227, 285, 312
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	165, 195, 312
MboI	GATC	3 cut(s)	163, 193, 310
MboII	GAAGA	4 cut(s)	105, 108, 220, 305
MflI	RGATCY	2 cut(s)	163, 193
MluCI	AATT	1 cut(s)	154
MnlI	CCTC	4 cut(s)	26, 46, 184, 213
MspA1I	CMGCKG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	53, 181, 254
NdeII	GATC	3 cut(s)	163, 193, 310
NlaIII	CATG	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	32, 238
PkrI	GCNGC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	163, 193
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	163, 193, 310
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	5 cut(s)	18, 127, 207, 219, 292
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	154
SseBI	AGGCCT	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	32, 238
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.