Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002360.1

Orthogroup ID

OG0016967

Physical Location & Seq

Genomic Coordinates Reverse (-)

51074 .. 53753

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002360.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggcatctacacaaaatgcatcccaaagtttatgctccgaatccgaatccgattccattcattccaattcaaattcaaaatcaatcgttccaagaccaagaccaactccaaccgatgcttcgagagttcagacaattcccaaaacattcaaggcccagaagaaaaagccagttgtagtgggaaagagaaagcgagctacagatgcagaggaagacgaaggagaaaagtctgaaaaaccagctggaagatcttgggtgtgggagcacttcaaaaagatcgacaagcctatatttgaggtcacggatgcatacctccctgcaattactgaatcaattgctcaagctttagaggccaaatccccatctgaagccatctctattatttactgtgttcttgaaaacccgtcatcttcttctgcagcgctacaaataaagggacaggctataacaaattttttggatctccttaggcatgaaaagcgagcagaggatctctgtaaccttctcacccagctgaggcctttcttcaacttgattccaaaggcaaagactgcaaagactgtccgtggcattattgatgcagtagctgaagtaccaggcacatctgatcttcagatttccctttgcaaggaaatggtgctgcggacctgcttgatcaaggaagtgagaaggcttgatgacaagcttcttcttgttgatatagatttgttagaaaccttcaatgctcttgaagattctcgagccgtgtttagcctcaagtatatgttgctttgcaagattatggtgagccatgcagatgatattgcaggaataatatcatctaaagcaggcctgcagtatgtagggcccgagctggatgccatgaaagcgctagacgaagatccaattgtccacaggcaactctcctctctgtttgacactctcttggaacaaaacctctgtagattgattgagccttacacaagggtggagattgctcatattgcagagctgattgaactgcctatcgaccatgtggagaaaaaattatctcagatgattttagacaagaagtttgctggaactttagatcaaggcgctggctgcctcatcatttttgaggatatcaagacagatgctatatactctgcagcgttggaaaccatatctaacatggaaaaggttgtggatagcctctatgtgagatctgccagaatagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

400

Amino Acids

44.41

Weight (kDa)

5.68

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016967)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g05860
rosa_chinensis	RchiOBHm_Chr6g0255441
rosa_laevigata	RLG00000020288
rosa_multiflora	Rmu_co8401755.1_g000001 Rmu_sc0002360.1_g000011 Rmu_sc0006904.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353690
rosa_rugosa	Rorug02G0166000 Rorug05G0316600 Rorug05G0475100 Rorug05G0558700
rosa_samantha	Rh6AG075000 Rh6BG068700 Rh6BG069300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	3 cut(s)	468, 498, 875
AcsI	RAATTY	2 cut(s)	73, 451
AcuI	CTGAAG	3 cut(s)	387, 596, 609
AfaI	GTAC	1 cut(s)	594
AfeI	AGCGCT	2 cut(s)	423, 870
AfiI	CCNNNNNNNGG	2 cut(s)	516, 628
AgsI	TTSAA	9 cut(s)	72, 78, 151, 271, 398, 529, 721, 731, 998
AjnI	CCWGG	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AleI	CACNNNNGTG	1 cut(s)	965
AluBI	AGCT	8 cut(s)	197, 242, 344, 514, 587, 685, 853, 991
AluI	AGCT	8 cut(s)	197, 242, 344, 514, 587, 685, 853, 991
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	468, 498, 875
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	2 cut(s)	738, 848
Aor51HI	AGCGCT	2 cut(s)	423, 870
AoxI	GGCC	5 cut(s)	153, 351, 518, 829, 845
ApaI	GGGCCC	1 cut(s)	849
ApeKI	GCWGC	4 cut(s)	419, 640, 1083, 1130
ApoI	RAATTY	2 cut(s)	73, 451
ArsI	GACNNNNNNTTYG	2 cut(s)	1037, 1069
AspLEI	GCGC	3 cut(s)	424, 871, 1079
AspS9I	GGNCC	4 cut(s)	154, 645, 845, 846
AsuHPI	GGTGA	2 cut(s)	499, 796
AvaI	CYCGRG	2 cut(s)	738, 848
AvaII	GGWCC	1 cut(s)	645
AxyI	CCTNAGG	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	849
BanII	GRGCYC	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	4 cut(s)	431, 627, 1070, 1142
BccI	CCATC	2 cut(s)	370, 380
BceAI	ACGGC	1 cut(s)	728
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciT130I	CCWGG	1 cut(s)	597
BclI	TGATCA	1 cut(s)	654
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	5 cut(s)	198, 417, 833, 940, 1128
BfoI	RGCGCY	3 cut(s)	425, 872, 1080
BfuAI	ACCTGC	1 cut(s)	656
BglII	AGATCT	2 cut(s)	248, 1184
BisI	GCNGC	4 cut(s)	420, 641, 1084, 1131
BlsI	GCNGC	4 cut(s)	421, 642, 1085, 1132
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	1 cut(s)	645
BmeT110I	CYCGRG	2 cut(s)	738, 848
BmgT120I	GGNCC	4 cut(s)	154, 645, 845, 846
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	8 cut(s)	14, 29, 106, 193, 295, 568, 847, 1105
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	324, 740
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 628
Bse1I	ACTGG	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	3 cut(s)	20, 310, 862
BseLI	CCNNNNNNNGG	2 cut(s)	516, 628
BseMII	CTCAG	2 cut(s)	506, 1046
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	895
BseSI	GKGCMC	1 cut(s)	849
BseXI	GCAGC	4 cut(s)	431, 627, 1070, 1142
BseYI	CCCAGC	1 cut(s)	510
BshFI	GGCC	5 cut(s)	155, 353, 520, 831, 847
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	2 cut(s)	738, 848
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	516, 628
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	5 cut(s)	155, 353, 520, 831, 847
BsoBI	CYCGRG	2 cut(s)	738, 848
Bsp120I	GGGCCC	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	267, 849
Bsp143I	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	5 cut(s)	155, 353, 520, 831, 847
BspCNI	CTCAG	2 cut(s)	507, 1045
BspLI	GGNNCC	1 cut(s)	847
BspMAI	CTGCAG	3 cut(s)	421, 837, 1132
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	3 cut(s)	468, 498, 875
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	389, 562
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	5 cut(s)	195, 483, 829, 833, 1081
BstDEI	CTNAG	3 cut(s)	467, 515, 1032
BstDSI	CCRYGG	1 cut(s)	565
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	20, 310, 862
BstH2I	RGCGCY	3 cut(s)	425, 872, 1080
BstHHI	GCGC	3 cut(s)	424, 871, 1079
BstKTI	GATC	9 cut(s)	251, 279, 463, 493, 610, 657, 883, 1072, 1187
BstMBI	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
BstMWI	GCNNNNNNNGC	8 cut(s)	203, 350, 478, 551, 866, 983, 1083, 1196
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	595
BstSFI	CTRYAG	5 cut(s)	198, 417, 833, 940, 1128
BstSLI	GKGCMC	1 cut(s)	849
BstV1I	GCAGC	4 cut(s)	431, 627, 1070, 1142
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	5 cut(s)	248, 460, 490, 880, 1184
BstYI	RGATCY	5 cut(s)	248, 460, 490, 880, 1184
Bsu36I	CCTNAGG	1 cut(s)	467
BsuRI	GGCC	5 cut(s)	155, 353, 520, 831, 847
BtgI	CCRYGG	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	20, 310, 862
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	5 cut(s)	195, 483, 829, 833, 1081
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	3 cut(s)	424, 871, 1079
Cfr13I	GGNCC	4 cut(s)	154, 645, 845, 846
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	6 cut(s)	473, 791, 862, 1013, 1153, 1200
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	3 cut(s)	467, 515, 1032
DpnI	GATC	9 cut(s)	250, 278, 462, 492, 609, 656, 882, 1071, 1186
DpnII	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
Eco147I	AGGCCT	2 cut(s)	520, 831
Eco24I	GRGCYC	1 cut(s)	849
Eco32I	GATATC	1 cut(s)	1105
Eco47I	GGWCC	1 cut(s)	645
Eco47III	AGCGCT	2 cut(s)	423, 870
Eco57I	CTGAAG	3 cut(s)	387, 596, 609
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	2 cut(s)	738, 848
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	1105
EcoT22I	ATGCAT	2 cut(s)	22, 310
EcoT38I	GRGCYC	1 cut(s)	849
FaeI	CATG	6 cut(s)	476, 794, 865, 1016, 1156, 1203
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	6 cut(s)	472, 790, 861, 1012, 1152, 1199
FbaI	TGATCA	1 cut(s)	654
Fnu4HI	GCNGC	4 cut(s)	420, 641, 1084, 1131
FokI	GGATG	3 cut(s)	7, 317, 869
FriOI	GRGCYC	1 cut(s)	849
Fsp4HI	GCNGC	4 cut(s)	420, 641, 1084, 1131
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	3 cut(s)	423, 870, 1078
GluI	GCNGC	4 cut(s)	420, 641, 1084, 1131
GsaI	CCCAGC	1 cut(s)	514
HaeII	RGCGCY	3 cut(s)	425, 872, 1080
HaeIII	GGCC	5 cut(s)	155, 353, 520, 831, 847
HhaI	GCGC	3 cut(s)	424, 871, 1079
Hin1II	CATG	6 cut(s)	476, 794, 865, 1016, 1156, 1203
Hin6I	GCGC	3 cut(s)	422, 869, 1077
HinP1I	GCGC	3 cut(s)	422, 869, 1077
HindIII	AAGCTT	2 cut(s)	342, 683
HinfI	GANTC	6 cut(s)	41, 47, 53, 329, 535, 734
HphI	GGTGA	2 cut(s)	499, 796
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	9 cut(s)	40, 46, 52, 132, 232, 367, 607, 615, 1035
Hpy188III	TCNNGA	5 cut(s)	123, 395, 728, 738, 1108
Hpy8I	GTNNAC	1 cut(s)	892
HpyAV	CCTTC	4 cut(s)	212, 512, 663, 727
HpyCH4III	ACNGT	2 cut(s)	389, 562
HpyF10VI	GCNNNNNNNGC	8 cut(s)	203, 350, 478, 551, 866, 983, 1083, 1196
HpyF3I	CTNAG	3 cut(s)	467, 515, 1032
Hsp92II	CATG	6 cut(s)	476, 794, 865, 1016, 1156, 1203
HspAI	GCGC	3 cut(s)	422, 869, 1077
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
LmnI	GCTCC	2 cut(s)	41, 262
Lsp1109I	GCAGC	4 cut(s)	431, 627, 1070, 1142
LweI	GCATC	8 cut(s)	14, 29, 106, 193, 295, 568, 847, 1105
MaeI	CTAG	1 cut(s)	872
MaeIII	GTNAC	2 cut(s)	298, 497
MalI	GATC	9 cut(s)	250, 278, 462, 492, 609, 656, 882, 1071, 1186
MboI	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
MfeI	CAATTG	2 cut(s)	333, 885
MflI	RGATCY	5 cut(s)	248, 460, 490, 880, 1184
MhlI	GDGCHC	2 cut(s)	267, 849
MluCI	AATT	8 cut(s)	67, 73, 135, 321, 333, 451, 885, 1025
MmeI	TCCRAC	2 cut(s)	134, 1116
Mph1103I	ATGCAT	2 cut(s)	22, 310
MslI	CAYNNNNRTG	2 cut(s)	795, 965
MspA1I	CMGCKG	2 cut(s)	242, 514
MspR9I	CCNGG	1 cut(s)	597
MunI	CAATTG	2 cut(s)	333, 885
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	8 cut(s)	203, 350, 478, 551, 866, 983, 1083, 1196
NdeII	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
NlaIII	CATG	6 cut(s)	476, 794, 865, 1016, 1156, 1203
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	2 cut(s)	22, 310
OliI	CACNNNNGTG	1 cut(s)	965
PaeR7I	CTCGAG	1 cut(s)	738
PceI	AGGCCT	2 cut(s)	520, 831
PfeI	GAWTC	6 cut(s)	41, 47, 53, 329, 535, 734
PkrI	GCNGC	4 cut(s)	421, 642, 1085, 1132
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	847
PspOMI	GGGCCC	1 cut(s)	845
PspPI	GGNCC	4 cut(s)	154, 645, 845, 846
PstI	CTGCAG	3 cut(s)	421, 837, 1132
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	5 cut(s)	248, 460, 490, 880, 1184
PvuII	CAGCTG	2 cut(s)	242, 514
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	2 cut(s)	795, 965
SatI	GCNGC	4 cut(s)	420, 641, 1084, 1131
Sau3AI	GATC	9 cut(s)	248, 276, 460, 490, 607, 654, 880, 1069, 1184
Sau96I	GGNCC	4 cut(s)	154, 645, 845, 846
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	2 cut(s)	267, 849
SfaNI	GCATC	8 cut(s)	14, 29, 106, 193, 295, 568, 847, 1105
SfcI	CTRYAG	5 cut(s)	198, 417, 833, 940, 1128
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	1 cut(s)	645
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	2 cut(s)	795, 965
SmlI	CTYRAG	3 cut(s)	339, 738, 755
SmoI	CTYRAG	3 cut(s)	339, 738, 755
Sse9I	AATT	8 cut(s)	67, 73, 135, 321, 333, 451, 885, 1025
SseBI	AGGCCT	2 cut(s)	520, 831
SsiI	CCGC	1 cut(s)	643
SspMI	CTAG	1 cut(s)	872
StuI	AGGCCT	2 cut(s)	520, 831
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	389, 562
TaqI	TCGA	4 cut(s)	122, 279, 739, 1008
TasI	AATT	8 cut(s)	67, 73, 135, 321, 333, 451, 885, 1025
TfiI	GAWTC	6 cut(s)	41, 47, 53, 329, 535, 734
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	4 cut(s)	419, 640, 1083, 1130
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	50, 489, 878
TspGWI	ACGGA	2 cut(s)	317, 554
VpaK11BI	GGWCC	1 cut(s)	645
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	2 cut(s)	73, 451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1150
XhoI	CTCGAG	1 cut(s)	738
XspI	CTAG	1 cut(s)	872
Zsp2I	ATGCAT	2 cut(s)	22, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.