pycom16g06030

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0018938
Physical Location & Seq
Forward (+)
3862567 .. 3863652
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
ATGTCGTTCTGCTTTATTTACTGGCCATATCTTACGACCTCGTCAAGATCGACATATCCGTTTAACGTTACAAAAAATGCAGAAAAAGAAAAGGCAGTGTCCCAAATTCAAAATCTACAGGGAACCGAAACCCTCATTAACCCCAACAGAATCGAAAATTCAGAGATGAGAGAAGAAACCAAGCAGCAAGATCAGCTAGCAATGGTGGCGGCAGAAGAGCAATTGCAGCAGCTCCGATCCAAAGCCACGGAGCTCCTCCTCCGTGAAGAATGGCAGGAGTCCGTACAAGCATACTCTCACTTCATCACCCTCTGCCGATCTCACATCTCAAACACCCTTCAAAACCCCGACCCAGATCATCTCCCCAAGCTCCGAAAATCTCTCTGCCTAGCCCTCTCGAACCGTGCAGAAGCACGATCCAGACTCCGAGATTTTGCAGAAGCCTTGAGGGATTGCGATCGGGCATTGGAAATCGAGAGGGCCCATTTCAAGACTCTTGTCTGCAAAGGTAAGATCTTGCTGAATCTGAACAGGTATTCGATGGCGCTGGACTGCTTTCGAACAGCTCAGCTCGACCCACAGGCCAATGGGAGCTCCGTGGACCTCGATGGGTACTTGCAGAAGTCCAAGAAGCTCGAGCTGATGTCGAGAACTGGAGCTTTTGATCTCTCTGAATGGGTTGTTAATGGGTTTTGCGGGAAGCCTCTGGAACCAGCTGAGTACATTGGTGCAGTGCAGATCAAGAAATCAGAGATTAGAGGGCGTGGACTGTTTGCGACGAAGAACATTGATGCCGGAACTTTGGTGTTGGTTGTGAAAGCTGTTGCCACAGAGAGGGGGATTTTGCCCGGTCAAGAATTGGATGAGAATGCTCAATTGGTCATGTGGAAGAACTTCACCGAAAAAGTTATGGATTCCGTGGCTAAATGTTCGAGAATCTGCGATTTGATTAGTACATTGTCGAGTGGGGAAGATGAGGATGAGCTTGAGGTCCCTGAGATCGAGCAATCGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

339

Amino Acids

38.26

Weight (kDa)

5.41

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018938)

Species Orthologous Gene IDs
pyrus_communis pycom16g06030
rosa_laevigata RLG00000013339
rosa_multiflora Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001
rosa_roxburghii Rroxscaffold_7G00191700
rosa_samantha Rh6AG216100 Rh6CG223500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 209, 696
AclI AACGTT 1 cut(s) 66
AclWI GGATC 2 cut(s) 231, 411
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 2 cut(s) 105, 157
AfaI GTAC 4 cut(s) 285, 614, 722, 955
AfiI CCNNNNNNNGG 1 cut(s) 834
AgsI TTSAA 3 cut(s) 110, 341, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 860, 892
Alw21I GWGCWC 2 cut(s) 255, 596
AlwI GGATC 2 cut(s) 231, 411
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 23, 480, 582
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 3 cut(s) 184, 226, 229
ApoI RAATTY 2 cut(s) 105, 157
Asp700I GAANNNNTTC 1 cut(s) 893
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 480, 481, 601, 991
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 2 cut(s) 298, 889
AsuII TTCGAA 1 cut(s) 559
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 2 cut(s) 601, 991
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 25
BanII GRGCYC 3 cut(s) 255, 484, 596
Bbv12I GWGCWC 2 cut(s) 255, 596
BbvI GCAGC 3 cut(s) 196, 238, 241
BccI CCATC 2 cut(s) 535, 602
BcnI CCSGG 1 cut(s) 849
BfaI CTAG 2 cut(s) 197, 389
BfmI CTRYAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 548
BglII AGATCT 1 cut(s) 513
BisI GCNGC 4 cut(s) 185, 210, 227, 230
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 4 cut(s) 186, 211, 228, 231
Bme1390I CCNGG 1 cut(s) 849
Bme18I GGWCC 2 cut(s) 601, 991
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 4 cut(s) 480, 481, 601, 991
BmiI GGNNCC 4 cut(s) 124, 482, 711, 993
BmrFI CCNGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 781
BmtI GCTAGC 1 cut(s) 200
BoxI GACNNNNGTC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 559
BpuEI CTTGAG 2 cut(s) 466, 1007
BpuMI CCSGG 1 cut(s) 849
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 246, 597, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse1I ACTGG 2 cut(s) 26, 658
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 3 cut(s) 246, 597, 918
BseGI GGATG 2 cut(s) 868, 985
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 3 cut(s) 581, 708, 987
BseNI ACTGG 2 cut(s) 26, 658
BseRI GAGGAG 2 cut(s) 245, 248
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 3 cut(s) 196, 238, 241
BsgI GTGCAG 3 cut(s) 426, 750, 755
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 3 cut(s) 25, 482, 584
BsiEI CGRYCG 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 255, 596
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 2 cut(s) 795, 849
BslFI GGGAC 2 cut(s) 85, 977
BslI CCNNNNNNNGG 1 cut(s) 834
BsmFI GGGAC 2 cut(s) 85, 977
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 3 cut(s) 25, 482, 584
BsoBI CYCGRG 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 559
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 255, 484, 596
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 2 cut(s) 209, 696
BspANI GGCC 3 cut(s) 25, 482, 584
BspCNI CTCAG 3 cut(s) 580, 709, 988
BspLI GGNNCC 4 cut(s) 124, 482, 711, 993
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 231, 411
BspQI GCTCTTC 1 cut(s) 210
BspT104I TTCGAA 1 cut(s) 559
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 2 cut(s) 26, 658
BssECI CCNNGG 3 cut(s) 246, 597, 918
Bst4CI ACNGT 2 cut(s) 404, 771
Bst6I CTCTTC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 567, 717, 996
BstDSI CCRYGG 3 cut(s) 246, 597, 918
BstF5I GGATG 2 cut(s) 868, 985
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 3 cut(s) 193, 206, 226
BstPAI GACNNNNGTC 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 847
BstSFI CTRYAG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 196, 238, 241
BstX2I RGATCY 1 cut(s) 513
BstYI RGATCY 1 cut(s) 513
BsuRI GGCC 3 cut(s) 25, 482, 584
BtgI CCRYGG 3 cut(s) 246, 597, 918
BtsCI GGATG 2 cut(s) 868, 985
BtsI GCAGTG 2 cut(s) 102, 738
BtsIMutI CAGTG 2 cut(s) 102, 738
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 480, 481, 601, 991
Csp6I GTAC 4 cut(s) 284, 613, 721, 954
CviAII CATG 1 cut(s) 883
CviQI GTAC 4 cut(s) 284, 613, 721, 954
DdeI CTNAG 3 cut(s) 567, 717, 996
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 2 cut(s) 253, 594
Eco24I GRGCYC 3 cut(s) 255, 484, 596
Eco47I GGWCC 2 cut(s) 601, 991
Eco53kI GAGCTC 2 cut(s) 253, 594
Eco88I CYCGRG 1 cut(s) 635
EcoICRI GAGCTC 2 cut(s) 253, 594
EcoO109I RGGNCCY 2 cut(s) 480, 991
EcoT38I GRGCYC 3 cut(s) 255, 484, 596
FaeI CATG 1 cut(s) 886
FaiI YATR 5 cut(s) 28, 55, 292, 884, 911
FaqI GGGAC 2 cut(s) 85, 977
FatI CATG 1 cut(s) 882
FauI CCCGC 1 cut(s) 689
Fnu4HI GCNGC 4 cut(s) 185, 210, 227, 230
FokI GGATG 2 cut(s) 875, 992
FriOI GRGCYC 3 cut(s) 255, 484, 596
Fsp4HI GCNGC 4 cut(s) 185, 210, 227, 230
FspBI CTAG 2 cut(s) 197, 389
GlaI GCGC 1 cut(s) 546
GluI GCNGC 4 cut(s) 185, 210, 227, 230
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 3 cut(s) 25, 482, 584
HapII CCGG 2 cut(s) 795, 849
HhaI GCGC 1 cut(s) 547
Hin1II CATG 1 cut(s) 886
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 7 cut(s) 150, 278, 423, 493, 523, 914, 936
HpaII CCGG 2 cut(s) 795, 849
HphI GGTGA 2 cut(s) 298, 889
Hpy166II GTNNAC 2 cut(s) 601, 767
Hpy188I TCNGA 7 cut(s) 163, 236, 374, 428, 528, 673, 751
Hpy8I GTNNAC 2 cut(s) 601, 767
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 2 cut(s) 404, 771
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 8 cut(s) 80, 226, 407, 437, 504, 619, 731, 736
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 206, 226
HpyF3I CTNAG 3 cut(s) 567, 717, 996
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 1 cut(s) 886
HspAI GCGC 1 cut(s) 545
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 7 cut(s) 237, 250, 258, 375, 591, 599, 656
Lsp1109I GCAGC 3 cut(s) 196, 238, 241
LweI GCATC 1 cut(s) 781
MaeI CTAG 2 cut(s) 197, 389
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 6 cut(s) 185, 227, 278, 793, 901, 983
MfeI CAATTG 2 cut(s) 221, 875
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 3 cut(s) 255, 484, 596
MlsI TGGCCA 1 cut(s) 25
MluCI AATT 5 cut(s) 105, 157, 221, 857, 875
MluNI TGGCCA 1 cut(s) 25
MlyI GAGTC 3 cut(s) 287, 417, 487
Mox20I TGGCCA 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 893
MscI TGGCCA 1 cut(s) 25
MseI TTAA 4 cut(s) 63, 138, 684, 1015
Msp20I TGGCCA 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 2 cut(s) 795, 849
MspR9I CCNGG 1 cut(s) 849
MunI CAATTG 2 cut(s) 221, 875
Mva1269I GAATGC 1 cut(s) 874
MwoI GCNNNNNNNGC 3 cut(s) 193, 206, 226
NciI CCSGG 1 cut(s) 849
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 1 cut(s) 886
NlaIV GGNNCC 4 cut(s) 124, 482, 711, 993
NspV TTCGAA 1 cut(s) 559
PaeR7I CTCGAG 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 56
PctI GAATGC 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 4 cut(s) 150, 523, 914, 936
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 4 cut(s) 186, 211, 228, 231
Ple19I CGATCG 1 cut(s) 460
PleI GAGTC 3 cut(s) 286, 417, 487
PpsI GAGTC 3 cut(s) 286, 417, 487
PpuMI RGGWCCY 1 cut(s) 991
PshAI GACNNNNGTC 1 cut(s) 497
Psp124BI GAGCTC 2 cut(s) 255, 596
Psp1406I AACGTT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 991
PspN4I GGNNCC 4 cut(s) 124, 482, 711, 993
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 4 cut(s) 480, 481, 601, 991
PspPPI RGGWCCY 1 cut(s) 991
PspXI VCTCGAGB 1 cut(s) 635
PsuI RGATCY 1 cut(s) 513
PsyI GACNNNGTC 1 cut(s) 40
PvuI CGATCG 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 4 cut(s) 285, 614, 722, 955
RsaNI GTAC 4 cut(s) 284, 613, 721, 954
SacI GAGCTC 2 cut(s) 255, 596
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 4 cut(s) 63, 138, 684, 1015
SatI GCNGC 4 cut(s) 185, 210, 227, 230
Sau96I GGNCC 4 cut(s) 480, 481, 601, 991
SchI GAGTC 3 cut(s) 287, 417, 487
ScrFI CCNGG 1 cut(s) 849
SduI GDGCHC 3 cut(s) 255, 484, 596
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 116
Sfr274I CTCGAG 1 cut(s) 635
SfuI TTCGAA 1 cut(s) 559
SinI GGWCC 2 cut(s) 601, 991
SlaI CTCGAG 1 cut(s) 635
SmlI CTYRAG 3 cut(s) 445, 635, 986
SmoI CTYRAG 3 cut(s) 445, 635, 986
Sse9I AATT 5 cut(s) 105, 157, 221, 857, 875
SsiI CCGC 2 cut(s) 209, 696
SspMI CTAG 2 cut(s) 197, 389
SstI GAGCTC 2 cut(s) 255, 596
StyD4I CCNGG 1 cut(s) 847
TaaI ACNGT 2 cut(s) 404, 771
TaiI ACGT 1 cut(s) 69
TasI AATT 5 cut(s) 105, 157, 221, 857, 875
TatI WGTACW 2 cut(s) 720, 953
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 4 cut(s) 150, 523, 914, 936
Tru1I TTAA 4 cut(s) 63, 138, 684, 1015
Tru9I TTAA 4 cut(s) 63, 138, 684, 1015
TscAI CASTG 2 cut(s) 102, 738
TseI GCWGC 3 cut(s) 184, 226, 229
TspDTI ATGAA 1 cut(s) 292
TspGWI ACGGA 6 cut(s) 48, 251, 263, 271, 586, 907
TspRI CASTG 2 cut(s) 102, 738
Tth111I GACNNNGTC 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 601, 991
XapI RAATTY 2 cut(s) 105, 157
XhoI CTCGAG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 2 cut(s) 197, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.