SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom16g06030 |
| rosa_laevigata | RLG00000013339 |
| rosa_multiflora | Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00191700 |
| rosa_samantha | Rh6AG216100 Rh6CG223500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AcoI | YGGCCR | 1 cut(s) | 39 |
| AcsI | RAATTY | 1 cut(s) | 147 |
| AfaI | GTAC | 2 cut(s) | 73, 155 |
| AluBI | AGCT | 2 cut(s) | 169, 230 |
| AluI | AGCT | 2 cut(s) | 169, 230 |
| Alw21I | GWGCWC | 1 cut(s) | 232 |
| AoxI | GGCC | 1 cut(s) | 39 |
| ApoI | RAATTY | 1 cut(s) | 147 |
| AxyI | CCTNAGG | 1 cut(s) | 105 |
| BalI | TGGCCA | 1 cut(s) | 41 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BanII | GRGCYC | 1 cut(s) | 232 |
| BbsI | GAAGAC | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 1 cut(s) | 232 |
| BccI | CCATC | 1 cut(s) | 22 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BmsI | GCATC | 2 cut(s) | 163, 228 |
| BpiI | GAAGAC | 1 cut(s) | 14 |
| Bse21I | CCTNAGG | 1 cut(s) | 105 |
| BseGI | GGATG | 2 cut(s) | 103, 205 |
| BseMII | CTCAG | 3 cut(s) | 9, 96, 105 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsiHKAI | GWGCWC | 1 cut(s) | 232 |
| BsnI | GGCC | 1 cut(s) | 41 |
| Bsp1286I | GDGCHC | 1 cut(s) | 232 |
| Bsp143I | GATC | 1 cut(s) | 117 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspCNI | CTCAG | 3 cut(s) | 10, 97, 106 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BssMI | GATC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 4 cut(s) | 18, 105, 114, 224 |
| BstF5I | GGATG | 2 cut(s) | 103, 205 |
| BstKTI | GATC | 1 cut(s) | 120 |
| BstMBI | GATC | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 109 |
| BstV2I | GAAGAC | 1 cut(s) | 14 |
| Bsu36I | CCTNAGG | 1 cut(s) | 105 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| BtsCI | GGATG | 2 cut(s) | 103, 205 |
| Csp6I | GTAC | 2 cut(s) | 72, 154 |
| CviAII | CATG | 1 cut(s) | 258 |
| CviJI | RGCY | 5 cut(s) | 41, 103, 133, 169, 230 |
| CviKI_1 | RGCY | 5 cut(s) | 41, 103, 133, 169, 230 |
| CviQI | GTAC | 2 cut(s) | 72, 154 |
| DdeI | CTNAG | 4 cut(s) | 18, 105, 114, 224 |
| DpnI | GATC | 1 cut(s) | 119 |
| DpnII | GATC | 1 cut(s) | 117 |
| EaeI | YGGCCR | 1 cut(s) | 39 |
| Ecl136II | GAGCTC | 1 cut(s) | 230 |
| Eco24I | GRGCYC | 1 cut(s) | 232 |
| Eco53kI | GAGCTC | 1 cut(s) | 230 |
| Eco81I | CCTNAGG | 1 cut(s) | 105 |
| EcoICRI | GAGCTC | 1 cut(s) | 230 |
| EcoT38I | GRGCYC | 1 cut(s) | 232 |
| FaeI | CATG | 1 cut(s) | 261 |
| FaiI | YATR | 3 cut(s) | 58, 60, 259 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 122, 154 |
| FatI | CATG | 1 cut(s) | 257 |
| FauNDI | CATATG | 1 cut(s) | 58 |
| FokI | GGATG | 2 cut(s) | 110, 212 |
| FriOI | GRGCYC | 1 cut(s) | 232 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| Hin1II | CATG | 1 cut(s) | 261 |
| HincII | GTYRAC | 1 cut(s) | 217 |
| HindII | GTYRAC | 1 cut(s) | 217 |
| HindIII | AAGCTT | 1 cut(s) | 167 |
| Hpy166II | GTNNAC | 1 cut(s) | 217 |
| Hpy188III | TCNNGA | 1 cut(s) | 51 |
| Hpy8I | GTNNAC | 1 cut(s) | 217 |
| HpyAV | CCTTC | 1 cut(s) | 255 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 109 |
| HpyF3I | CTNAG | 4 cut(s) | 18, 105, 114, 224 |
| Hsp92II | CATG | 1 cut(s) | 261 |
| Kzo9I | GATC | 1 cut(s) | 117 |
| LmnI | GCTCC | 2 cut(s) | 142, 235 |
| LpnPI | CCDG | 3 cut(s) | 117, 126, 147 |
| LweI | GCATC | 2 cut(s) | 163, 228 |
| MalI | GATC | 1 cut(s) | 119 |
| MboI | GATC | 1 cut(s) | 117 |
| MboII | GAAGA | 1 cut(s) | 19 |
| MhlI | GDGCHC | 1 cut(s) | 232 |
| MlsI | TGGCCA | 1 cut(s) | 41 |
| MluCI | AATT | 2 cut(s) | 147, 205 |
| MluNI | TGGCCA | 1 cut(s) | 41 |
| MnlI | CCTC | 2 cut(s) | 88, 100 |
| Mox20I | TGGCCA | 1 cut(s) | 41 |
| MscI | TGGCCA | 1 cut(s) | 41 |
| MseI | TTAA | 2 cut(s) | 129, 188 |
| Msp20I | TGGCCA | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 109 |
| NdeI | CATATG | 1 cut(s) | 58 |
| NdeII | GATC | 1 cut(s) | 117 |
| NlaIII | CATG | 1 cut(s) | 261 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| Psp124BI | GAGCTC | 1 cut(s) | 232 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| RsaI | GTAC | 2 cut(s) | 73, 155 |
| RsaNI | GTAC | 2 cut(s) | 72, 154 |
| SacI | GAGCTC | 1 cut(s) | 232 |
| SaqAI | TTAA | 2 cut(s) | 129, 188 |
| Sau3AI | GATC | 1 cut(s) | 117 |
| SduI | GDGCHC | 1 cut(s) | 232 |
| SetI | ASST | 4 cut(s) | 111, 171, 232, 247 |
| SfaNI | GCATC | 2 cut(s) | 163, 228 |
| SgeI | CNNG | 9 cut(s) | 49, 63, 93, 116, 125, 146, 151, 182, 189 |
| Sse9I | AATT | 2 cut(s) | 147, 205 |
| SstI | GAGCTC | 1 cut(s) | 232 |
| TaqI | TCGA | 3 cut(s) | 50, 209, 248 |
| TasI | AATT | 2 cut(s) | 147, 205 |
| Tru1I | TTAA | 2 cut(s) | 129, 188 |
| Tru9I | TTAA | 2 cut(s) | 129, 188 |
| XapI | RAATTY | 1 cut(s) | 147 |