SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom16g06030 |
| rosa_laevigata | RLG00000013339 |
| rosa_multiflora | Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00191700 |
| rosa_samantha | Rh6AG216100 Rh6CG223500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 253 |
| AcoI | YGGCCR | 1 cut(s) | 183 |
| AfaI | GTAC | 3 cut(s) | 217, 299, 429 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 468 |
| AflIII | ACRYGT | 1 cut(s) | 200 |
| AgsI | TTSAA | 1 cut(s) | 510 |
| AluBI | AGCT | 5 cut(s) | 56, 83, 316, 535, 682 |
| AluI | AGCT | 5 cut(s) | 56, 83, 316, 535, 682 |
| Alw21I | GWGCWC | 1 cut(s) | 291 |
| AoxI | GGCC | 1 cut(s) | 183 |
| AseI | ATTAAT | 3 cut(s) | 75, 264, 674 |
| AspLEI | GCGC | 1 cut(s) | 579 |
| AsuC2I | CCSGG | 2 cut(s) | 111, 710 |
| AsuHPI | GGTGA | 2 cut(s) | 242, 539 |
| BalI | TGGCCA | 1 cut(s) | 185 |
| BanI | GGYRCC | 1 cut(s) | 253 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| Bbv12I | GWGCWC | 1 cut(s) | 291 |
| BccI | CCATC | 2 cut(s) | 166, 236 |
| BcnI | CCSGG | 2 cut(s) | 111, 710 |
| BfmI | CTRYAG | 1 cut(s) | 616 |
| BmcAI | AGTACT | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 2 cut(s) | 111, 710 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 2 cut(s) | 111, 710 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| BpuEI | CTTGAG | 1 cut(s) | 269 |
| BpuMI | CCSGG | 2 cut(s) | 111, 710 |
| BsaJI | CCNNGG | 1 cut(s) | 180 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 468 |
| BseDI | CCNNGG | 1 cut(s) | 180 |
| BseGI | GGATG | 4 cut(s) | 130, 247, 352, 729 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 468 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseRI | GAGGAG | 1 cut(s) | 545 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BshNI | GGYRCC | 1 cut(s) | 253 |
| BsiHKAI | GWGCWC | 1 cut(s) | 291 |
| BsiSI | CCGG | 2 cut(s) | 110, 709 |
| BslFI | GGGAC | 1 cut(s) | 500 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 468 |
| BsmFI | GGGAC | 1 cut(s) | 500 |
| BsmI | GAATGC | 2 cut(s) | 136, 735 |
| BsnI | GGCC | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 1 cut(s) | 291 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspMAI | CTGCAG | 1 cut(s) | 620 |
| BspT107I | GGYRCC | 1 cut(s) | 253 |
| BssECI | CCNNGG | 1 cut(s) | 180 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 401 |
| BstDEI | CTNAG | 1 cut(s) | 258 |
| BstDSI | CCRYGG | 1 cut(s) | 180 |
| BstF5I | GGATG | 4 cut(s) | 130, 247, 352, 729 |
| BstHHI | GCGC | 1 cut(s) | 579 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 253 |
| BstNSI | RCATGY | 2 cut(s) | 204, 482 |
| BstSCI | CCNGG | 2 cut(s) | 109, 708 |
| BstSFI | CTRYAG | 1 cut(s) | 616 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtgI | CCRYGG | 1 cut(s) | 180 |
| BtsCI | GGATG | 4 cut(s) | 130, 247, 352, 729 |
| BtsIMutI | CAGTG | 2 cut(s) | 174, 406 |
| CfoI | GCGC | 1 cut(s) | 579 |
| Csp6I | GTAC | 3 cut(s) | 216, 298, 428 |
| CviAII | CATG | 4 cut(s) | 201, 453, 479, 503 |
| CviQI | GTAC | 3 cut(s) | 216, 298, 428 |
| DdeI | CTNAG | 1 cut(s) | 258 |
| EaeI | YGGCCR | 1 cut(s) | 183 |
| FaeI | CATG | 4 cut(s) | 204, 456, 482, 506 |
| FaqI | GGGAC | 1 cut(s) | 500 |
| FatI | CATG | 4 cut(s) | 200, 452, 478, 502 |
| FokI | GGATG | 4 cut(s) | 137, 254, 359, 736 |
| GlaI | GCGC | 1 cut(s) | 578 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| HapII | CCGG | 2 cut(s) | 110, 709 |
| HhaI | GCGC | 1 cut(s) | 579 |
| Hin1II | CATG | 4 cut(s) | 204, 456, 482, 506 |
| Hin6I | GCGC | 1 cut(s) | 577 |
| HinP1I | GCGC | 1 cut(s) | 577 |
| HindIII | AAGCTT | 1 cut(s) | 314 |
| HinfI | GANTC | 2 cut(s) | 176, 368 |
| HpaII | CCGG | 2 cut(s) | 110, 709 |
| HphI | GGTGA | 2 cut(s) | 242, 539 |
| Hpy188I | TCNGA | 1 cut(s) | 286 |
| Hpy188III | TCNNGA | 4 cut(s) | 116, 195, 510, 715 |
| Hpy99I | CGWCG | 1 cut(s) | 43 |
| HpyAV | CCTTC | 1 cut(s) | 653 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 401 |
| HpyCH4V | TGCA | 7 cut(s) | 89, 467, 478, 545, 612, 618, 688 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 253 |
| HpyF3I | CTNAG | 1 cut(s) | 258 |
| Hsp92II | CATG | 4 cut(s) | 204, 456, 482, 506 |
| HspAI | GCGC | 1 cut(s) | 577 |
| LmnI | GCTCC | 2 cut(s) | 286, 532 |
| LpnPI | CCDG | 7 cut(s) | 42, 123, 270, 291, 510, 604, 722 |
| MboII | GAAGA | 5 cut(s) | 55, 163, 245, 322, 406 |
| MhlI | GDGCHC | 1 cut(s) | 291 |
| MlsI | TGGCCA | 1 cut(s) | 185 |
| MluCI | AATT | 4 cut(s) | 137, 352, 671, 736 |
| MluNI | TGGCCA | 1 cut(s) | 185 |
| MmeI | TCCRAC | 1 cut(s) | 549 |
| Mox20I | TGGCCA | 1 cut(s) | 185 |
| MscI | TGGCCA | 1 cut(s) | 185 |
| MseI | TTAA | 5 cut(s) | 75, 264, 273, 335, 674 |
| Msp20I | TGGCCA | 1 cut(s) | 185 |
| MspI | CCGG | 2 cut(s) | 110, 709 |
| MspR9I | CCNGG | 2 cut(s) | 111, 710 |
| Mva1269I | GAATGC | 2 cut(s) | 136, 735 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 253 |
| NciI | CCSGG | 2 cut(s) | 111, 710 |
| NlaIII | CATG | 4 cut(s) | 204, 456, 482, 506 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NspI | RCATGY | 2 cut(s) | 204, 482 |
| PciI | ACATGT | 1 cut(s) | 200 |
| PctI | GAATGC | 2 cut(s) | 136, 735 |
| PfeI | GAWTC | 2 cut(s) | 176, 368 |
| PscI | ACATGT | 1 cut(s) | 200 |
| PshBI | ATTAAT | 3 cut(s) | 75, 264, 674 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 389, 421 |
| PstI | CTGCAG | 1 cut(s) | 620 |
| RsaI | GTAC | 3 cut(s) | 217, 299, 429 |
| RsaNI | GTAC | 3 cut(s) | 216, 298, 428 |
| SaqAI | TTAA | 5 cut(s) | 75, 264, 273, 335, 674 |
| ScaI | AGTACT | 1 cut(s) | 217 |
| ScrFI | CCNGG | 2 cut(s) | 111, 710 |
| SduI | GDGCHC | 1 cut(s) | 291 |
| SfcI | CTRYAG | 1 cut(s) | 616 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| Sse9I | AATT | 4 cut(s) | 137, 352, 671, 736 |
| StyD4I | CCNGG | 2 cut(s) | 109, 708 |
| TaaI | ACNGT | 2 cut(s) | 169, 401 |
| TaqI | TCGA | 5 cut(s) | 194, 224, 356, 371, 650 |
| TasI | AATT | 4 cut(s) | 137, 352, 671, 736 |
| TatI | WGTACW | 1 cut(s) | 215 |
| TfiI | GAWTC | 2 cut(s) | 176, 368 |
| Tru1I | TTAA | 5 cut(s) | 75, 264, 273, 335, 674 |
| Tru9I | TTAA | 5 cut(s) | 75, 264, 273, 335, 674 |
| TscAI | CASTG | 2 cut(s) | 174, 406 |
| TspDTI | ATGAA | 3 cut(s) | 426, 441, 491 |
| TspGWI | ACGGA | 3 cut(s) | 107, 169, 706 |
| TspRI | CASTG | 2 cut(s) | 174, 406 |
| VspI | ATTAAT | 3 cut(s) | 75, 264, 674 |
| XceI | RCATGY | 2 cut(s) | 204, 482 |
| ZrmI | AGTACT | 1 cut(s) | 217 |