RLG00000013339

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018938
Physical Location & Seq
Reverse (-)
30026559 .. 30028961
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013339

Sequence Viewer

Length: 681 bp
ATGTTGGAGTGGGTGATCAATGGGTTTCGAGCTAAGCCCCAGGAGCCAGCTGAGTACATTGCGGCAGTGGAGATGAGGAAGTCAGGGATTAGAGGGCGTGGCTTGTTTGCGACGAAGAATATTGAAGCTGGGAGTTTGGTGCTGATTAATAAAGCAGTTGCAATGGAGAGAGGTATTTTGCCGGGTCAAGATTTGGATGAGAATGCCCAATTAGTCATGTGGAAGACTTTTACTGAGAAAGTGATGGATTCCGTGGCCAAATGTTCGAGAACATGTGGTTTGATTGGTACATTGTCAAGTGGTGAAGATGAGGATAAGCTTGAGGTACCTGAGATCAAGCTTGAGGTACCTGAGATCAACCTGTTTAAGCCTGACTCGGAGCAAATTGGGTACTCTAATGAGAAGAAGCTTGATGCGAGTAGGGTTTTAAAGGTCAGGATTGGATTTGAAGAACTAAAGGAGGAGAGGGAAGGTGTGGTTATTGAGCTAGAGGGGAGGAGAGTGGTGATGGTAGTGGTGGGAAGGGCGAAGGAACTCAACGATAGTAAACGGTGGGACCTGGTGAAGTTTGGGGTGGGCGGTGATGAGGATGGACATGATTGGGCTGTGGCGGAAGTGAAGGAGAGCATAGGTGGTTTTGGTTGCAGGAGAAGAAGCCATGGAGAAGAAAAAAGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

227

Amino Acids

25.28

Weight (kDa)

5.32

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018938)

Species Orthologous Gene IDs
pyrus_communis pycom16g06030
rosa_laevigata RLG00000013339
rosa_multiflora Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001
rosa_roxburghii Rroxscaffold_7G00191700
rosa_samantha Rh6AG216100 Rh6CG223500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 325, 346
AccB1I GGYRCC 2 cut(s) 325, 346
AciI CCGC 3 cut(s) 62, 579, 611
AcoI YGGCCR 1 cut(s) 255
AfaI GTAC 5 cut(s) 56, 289, 327, 348, 392
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 2 cut(s) 125, 449
AjnI CCWGG 2 cut(s) 39, 558
AluBI AGCT 7 cut(s) 32, 50, 128, 319, 340, 409, 487
AluI AGCT 7 cut(s) 32, 50, 128, 319, 340, 409, 487
AoxI GGCC 1 cut(s) 255
AseI ATTAAT 1 cut(s) 147
Asp718I GGTACC 2 cut(s) 325, 346
AspS9I GGNCC 1 cut(s) 556
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 5 cut(s) 25, 314, 517, 574, 593
AvaII GGWCC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 2 cut(s) 325, 346
BbsI GAAGAC 1 cut(s) 230
BccI CCATC 3 cut(s) 238, 502, 584
BciT130I CCWGG 2 cut(s) 41, 560
BclI TGATCA 1 cut(s) 15
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 488
BisI GCNGC 1 cut(s) 63
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 41, 183, 560
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 4 cut(s) 45, 327, 348, 557
BmrFI CCNGG 3 cut(s) 41, 183, 560
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 341, 362
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 39, 252, 658
Bse3DI GCAATG 2 cut(s) 57, 168
BseBI CCWGG 2 cut(s) 41, 560
BseDI CCNNGG 3 cut(s) 39, 252, 658
BseGI GGATG 2 cut(s) 202, 595
BseMI GCAATG 2 cut(s) 57, 168
BseMII CTCAG 4 cut(s) 42, 225, 321, 342
BseRI GAGGAG 2 cut(s) 476, 511
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 2 cut(s) 325, 346
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 15, 333, 354
Bsp1720I GCTNAGC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 658
BspACI CCGC 3 cut(s) 62, 579, 611
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 4 cut(s) 43, 226, 322, 343
BspLI GGNNCC 4 cut(s) 45, 327, 348, 557
BspT107I GGYRCC 2 cut(s) 325, 346
BsrDI GCAATG 2 cut(s) 57, 168
BssECI CCNNGG 3 cut(s) 39, 252, 658
BssMI GATC 3 cut(s) 15, 333, 354
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 2 cut(s) 41, 560
Bst4CI ACNGT 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 5 cut(s) 33, 51, 234, 330, 351
BstDSI CCRYGG 2 cut(s) 252, 658
BstF5I GGATG 2 cut(s) 202, 595
BstKTI GATC 3 cut(s) 18, 336, 357
BstMBI GATC 3 cut(s) 15, 333, 354
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 2 cut(s) 41, 560
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 39, 181, 558
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 2 cut(s) 252, 658
BtsCI GGATG 2 cut(s) 202, 595
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 556
CsiI ACCWGGT 1 cut(s) 558
Csp6I GTAC 5 cut(s) 55, 288, 326, 347, 391
CviAII CATG 4 cut(s) 217, 273, 596, 659
CviQI GTAC 5 cut(s) 55, 288, 326, 347, 391
DdeI CTNAG 5 cut(s) 33, 51, 234, 330, 351
DpnI GATC 3 cut(s) 17, 335, 356
DpnII GATC 3 cut(s) 15, 333, 354
DraI TTTAAA 1 cut(s) 429
EaeI YGGCCR 1 cut(s) 255
EciI GGCGGA 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 556
EcoO109I RGGNCCY 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 39, 558
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
FaeI CATG 4 cut(s) 220, 276, 599, 662
FaiI YATR 5 cut(s) 218, 274, 597, 629, 660
FaqI GGGAC 1 cut(s) 569
FatI CATG 4 cut(s) 216, 272, 595, 658
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 209, 602
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 488
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 182
Hin1II CATG 4 cut(s) 220, 276, 599, 662
HindIII AAGCTT 3 cut(s) 317, 338, 407
HinfI GANTC 2 cut(s) 248, 374
HpaII CCGG 1 cut(s) 182
HphI GGTGA 5 cut(s) 25, 314, 517, 574, 593
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 3 cut(s) 188, 267, 436
Hpy8I GTNNAC 1 cut(s) 548
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 4 cut(s) 464, 516, 523, 613
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4V TGCA 2 cut(s) 161, 645
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 5 cut(s) 33, 51, 234, 330, 351
Hsp92II CATG 4 cut(s) 220, 276, 599, 662
KpnI GGTACC 2 cut(s) 329, 350
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 3 cut(s) 15, 333, 354
LmnI GCTCC 2 cut(s) 43, 379
LweI GCATC 1 cut(s) 403
MabI ACCWGGT 1 cut(s) 558
MaeI CTAG 1 cut(s) 488
MalI GATC 3 cut(s) 17, 335, 356
MboI GATC 3 cut(s) 15, 333, 354
MboII GAAGA 7 cut(s) 127, 235, 317, 415, 461, 663, 677
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 2 cut(s) 209, 384
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 3 cut(s) 147, 366, 428
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 3 cut(s) 41, 183, 560
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 41, 560
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 658
NdeII GATC 3 cut(s) 15, 333, 354
NlaIII CATG 4 cut(s) 220, 276, 599, 662
NlaIV GGNNCC 4 cut(s) 45, 327, 348, 557
NspI RCATGY 1 cut(s) 276
PciI ACATGT 1 cut(s) 272
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 272
PshBI ATTAAT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 39, 558
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 2 cut(s) 39, 558
PspN4I GGNNCC 4 cut(s) 45, 327, 348, 557
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 5 cut(s) 56, 289, 327, 348, 392
RsaNI GTAC 5 cut(s) 55, 288, 326, 347, 391
SaqAI TTAA 3 cut(s) 147, 366, 428
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 15, 333, 354
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 41, 183, 560
SexAI ACCWGGT 1 cut(s) 558
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 320, 341
SmoI CTYRAG 2 cut(s) 320, 341
Sse9I AATT 2 cut(s) 209, 384
SsiI CCGC 3 cut(s) 62, 579, 611
SspI AATATT 1 cut(s) 121
SspMI CTAG 1 cut(s) 488
StyD4I CCNGG 3 cut(s) 39, 181, 558
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 28, 266
TasI AATT 2 cut(s) 209, 384
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 147, 366, 428
Tru9I TTAA 3 cut(s) 147, 366, 428
TscAI CASTG 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 556
VspI ATTAAT 1 cut(s) 147
XceI RCATGY 1 cut(s) 276
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.