Rroxscaffold_7G00191700

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018938
Physical Location & Seq
Reverse (-)
32396085 .. 32397082
998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191700.1

Sequence Viewer

Length: 411 bp
ATGGATTCCGCGGTCAAATGTTTGGGAACATGTGGTTTGATTAGTACATTGTCAAGTGGTGAAGATGAGGATGGGCTTAAGGTACCTAAGATCAATCTGTTTAAGCCCGACTCAAAGCAAATTGGGTACTCTAATGAGAAGAAGCTTGATGCGAGTAGGATTTTAAGTATTTTGGATGTCAATTTGATTGTTGACTATCCGAGAGCTCCAATCTTTGTTGCCTTCTATTTCTCCATAAACTCCTTTAAAGAGAGGAAGAACTCCCCCACGGCGCGGTTCACCACGGTAAGGAATGGATTTGAAGAATTGAAGGAGGAAAGGGAAGGTGCGGTTATTGAGTTTGAGGGGAAGAGAGTGGTGGTGGTGGTGGTGGTGGGGAGGGTAAAGGACCTTAACGATGGTAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

8.53

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018938)

Species Orthologous Gene IDs
pyrus_communis pycom16g06030
rosa_laevigata RLG00000013339
rosa_multiflora Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001
rosa_roxburghii Rroxscaffold_7G00191700
rosa_samantha Rh6AG216100 Rh6CG223500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 82
AccII CGCG 2 cut(s) 11, 274
AciI CCGC 4 cut(s) 9, 11, 274, 329
AfaI GTAC 3 cut(s) 46, 84, 128
AfiI CCNNNNNNNGG 2 cut(s) 273, 288
AflII CTTAAG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 2 cut(s) 302, 310
AluBI AGCT 2 cut(s) 145, 206
AluI AGCT 2 cut(s) 145, 206
Alw21I GWGCWC 1 cut(s) 208
Asp718I GGTACC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 71, 271
AvaII GGWCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BccI CCATC 2 cut(s) 65, 392
BceAI ACGGC 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 9, 267, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 288
BseDI CCNNGG 3 cut(s) 9, 267, 282
BseGI GGATG 2 cut(s) 76, 181
BseLI CCNNNNNNNGG 2 cut(s) 273, 288
Bsh1236I CGCG 2 cut(s) 11, 274
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 273, 288
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 4 cut(s) 9, 11, 274, 329
BspFNI CGCG 2 cut(s) 11, 274
BspLI GGNNCC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 82
BspTI CTTAAG 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 9, 267, 282
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 286, 408
Bst6I CTCTTC 1 cut(s) 344
BstAFI CTTAAG 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 3 cut(s) 9, 267, 282
BstF5I GGATG 2 cut(s) 76, 181
BstFNI CGCG 2 cut(s) 11, 274
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 33
BstUI CGCG 2 cut(s) 11, 274
BtgI CCRYGG 3 cut(s) 9, 267, 282
BtsCI GGATG 2 cut(s) 76, 181
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 388
Cfr42I CCGCGG 1 cut(s) 12
Csp6I GTAC 3 cut(s) 45, 83, 127
CviAII CATG 1 cut(s) 30
CviJI RGCY 4 cut(s) 76, 106, 145, 206
CviKI_1 RGCY 4 cut(s) 76, 106, 145, 206
CviQI GTAC 3 cut(s) 45, 83, 127
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 1 cut(s) 33
FaiI YATR 2 cut(s) 31, 236
FatI CATG 1 cut(s) 29
FokI GGATG 2 cut(s) 83, 188
FriOI GRGCYC 1 cut(s) 208
GlaI GCGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 274
Hin1II CATG 1 cut(s) 33
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 2 cut(s) 5, 110
HphI GGTGA 2 cut(s) 71, 271
Hpy166II GTNNAC 3 cut(s) 193, 279, 404
Hpy188I TCNGA 1 cut(s) 201
Hpy8I GTNNAC 3 cut(s) 193, 279, 404
HpyAV CCTTC 3 cut(s) 232, 304, 317
HpyCH4III ACNGT 2 cut(s) 286, 408
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 33
HspAI GCGC 1 cut(s) 272
KpnI GGTACC 1 cut(s) 86
KspI CCGCGG 1 cut(s) 12
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 211
LweI GCATC 1 cut(s) 139
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 5 cut(s) 74, 151, 268, 314, 361
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 120, 181, 305
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 5 cut(s) 61, 246, 307, 337, 372
MseI TTAA 5 cut(s) 78, 102, 164, 246, 393
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 77
MvnI CGCG 2 cut(s) 11, 274
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 33
NlaIV GGNNCC 1 cut(s) 84
NspI RCATGY 1 cut(s) 33
PciI ACATGT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 5
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 388
PscI ACATGT 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 388
PspPPI RGGWCCY 1 cut(s) 388
RsaI GTAC 3 cut(s) 46, 84, 128
RsaNI GTAC 3 cut(s) 45, 83, 127
SacI GAGCTC 1 cut(s) 208
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 5 cut(s) 78, 102, 164, 246, 393
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 208
SetI ASST 6 cut(s) 84, 88, 147, 208, 328, 393
SfaNI GCATC 1 cut(s) 139
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
SinI GGWCC 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 120, 181, 305
SsiI CCGC 4 cut(s) 9, 11, 274, 329
SstI GAGCTC 1 cut(s) 208
TaaI ACNGT 2 cut(s) 286, 408
TasI AATT 3 cut(s) 120, 181, 305
TatI WGTACW 1 cut(s) 44
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 5 cut(s) 78, 102, 164, 246, 393
Tru9I TTAA 5 cut(s) 78, 102, 164, 246, 393
Vha464I CTTAAG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 388
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.