Rmu_sc0000206.1_g000003

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000206.1
OG0018938
Physical Location & Seq
Reverse (-)
21722 .. 21982
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000206.1_g000003.1.cds

Sequence Viewer

Length: 261 bp
atgtggaagacttttactgagaaagtgatcgatttcgtggccaaatgttcgagaacatgtggtttgattggtacattatcaagtggtggagatgaggatgagcctgaggtgcctgagatcaatctgtttaagcctgacttggagcaaatttggtactctaatgagaagcttgatgcaagtagggttttaagtattttggatgtcaattcgattgttgactatctaagagctccaatgatgccgccttcgatttctccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

4.4

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018938)

Species Orthologous Gene IDs
pyrus_communis pycom16g06030
rosa_laevigata RLG00000013339
rosa_multiflora Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001
rosa_roxburghii Rroxscaffold_7G00191700
rosa_samantha Rh6AG216100 Rh6CG223500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 147
AfaI GTAC 2 cut(s) 73, 155
AflIII ACRYGT 1 cut(s) 56
AluBI AGCT 2 cut(s) 169, 230
AluI AGCT 2 cut(s) 169, 230
Alw21I GWGCWC 1 cut(s) 232
AoxI GGCC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 147
AxyI CCTNAGG 1 cut(s) 105
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 232
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 2 cut(s) 163, 228
BpiI GAAGAC 1 cut(s) 14
Bsa29I ATCGAT 1 cut(s) 30
Bse21I CCTNAGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 30
BseGI GGATG 2 cut(s) 103, 205
BseMII CTCAG 3 cut(s) 9, 96, 105
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 109
BshVI ATCGAT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 232
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 27, 117
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 3 cut(s) 10, 97, 106
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 109
BssMI GATC 2 cut(s) 27, 117
BstDEI CTNAG 4 cut(s) 18, 105, 114, 224
BstF5I GGATG 2 cut(s) 103, 205
BstKTI GATC 2 cut(s) 30, 120
BstMBI GATC 2 cut(s) 27, 117
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 2 cut(s) 103, 205
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 2 cut(s) 72, 154
CviAII CATG 2 cut(s) 57, 258
CviJI RGCY 5 cut(s) 41, 103, 133, 169, 230
CviKI_1 RGCY 5 cut(s) 41, 103, 133, 169, 230
CviQI GTAC 2 cut(s) 72, 154
DdeI CTNAG 4 cut(s) 18, 105, 114, 224
DpnI GATC 2 cut(s) 29, 119
DpnII GATC 2 cut(s) 27, 117
EaeI YGGCCR 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 232
FaeI CATG 2 cut(s) 60, 261
FaiI YATR 2 cut(s) 58, 259
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 2 cut(s) 56, 257
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 2 cut(s) 110, 212
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 1 cut(s) 41
Hin1II CATG 2 cut(s) 60, 261
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 4 cut(s) 18, 105, 114, 224
Hsp92II CATG 2 cut(s) 60, 261
Kzo9I GATC 2 cut(s) 27, 117
LmnI GCTCC 2 cut(s) 142, 235
LpnPI CCDG 3 cut(s) 117, 126, 147
LweI GCATC 2 cut(s) 163, 228
MalI GATC 2 cut(s) 29, 119
MboI GATC 2 cut(s) 27, 117
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 2 cut(s) 147, 205
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 2 cut(s) 88, 100
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 129, 188
Msp20I TGGCCA 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 2 cut(s) 27, 117
NlaIII CATG 2 cut(s) 60, 261
NlaIV GGNNCC 1 cut(s) 111
NspI RCATGY 1 cut(s) 60
PciI ACATGT 1 cut(s) 56
PkrI GCNGC 1 cut(s) 243
PscI ACATGT 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 111
RsaI GTAC 2 cut(s) 73, 155
RsaNI GTAC 2 cut(s) 72, 154
SacI GAGCTC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 129, 188
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 2 cut(s) 27, 117
SduI GDGCHC 1 cut(s) 232
SetI ASST 3 cut(s) 111, 171, 232
SfaNI GCATC 2 cut(s) 163, 228
Sse9I AATT 2 cut(s) 147, 205
SsiI CCGC 1 cut(s) 242
SstI GAGCTC 1 cut(s) 232
TaqI TCGA 4 cut(s) 30, 50, 209, 248
TasI AATT 2 cut(s) 147, 205
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 129, 188
Tru9I TTAA 2 cut(s) 129, 188
XapI RAATTY 1 cut(s) 147
XceI RCATGY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.