Rmu_co8303975.1_g000001

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8303975.1
OG0018938
Physical Location & Seq
Reverse (-)
2 .. 626
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8303975.1_g000001.1.cds

Sequence Viewer

Length: 625 bp
atgagagaaacccaacaacaacagcaacagctagaaatggcagaagagctaatgcagcagctcagatccaaagccacagagctcttactaagagaagaatggagcgaatccatacaagtctattctcagttcatcaatctctgccaacaccacatcaatgaaaccaccccagacaacctcccaaagctccacaagtccctctgcctggccctctcgaaccgagccgaagcgcgatccagactccgagactatgcacaagccttgaaggattgtgatgaggcactgaaaattgagagcacccatttcaagactctcatctgcaaaggtaagattttgctgaatttgaacaggtactccatggcattgacttgcttcagaactgctcagcttgatcctcaggcaaatgggagctcggttgggcttaatgggtacttgcagaaatgcaagaagctcgaactgatgtcgaaaactggagctttcgatatgtctgagtgggtgatcaatgggtttcgggctaagcctccggagccggctgagtacattggggcggtggagatgaggaagtcggggattagagggcgtggtttgtttgcgacgaagaatatggaagctgggagtttggtgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

208

Amino Acids

23.64

Weight (kDa)

8.71

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018938)

Species Orthologous Gene IDs
pyrus_communis pycom16g06030
rosa_laevigata RLG00000013339
rosa_multiflora Rmu_co8303975.1_g000001 Rmu_sc0000206.1_g000003 Rmu_sc0007276.1_g000001 Rmu_sc0040007.1_g000001
rosa_roxburghii Rroxscaffold_7G00191700
rosa_samantha Rh6AG216100 Rh6CG223500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 1 cut(s) 548
AclWI GGATC 3 cut(s) 60, 228, 386
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 3 cut(s) 353, 431, 539
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 3 cut(s) 265, 307, 346
AjnI CCWGG 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
Alw21I GWGCWC 3 cut(s) 84, 299, 413
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 3 cut(s) 60, 228, 386
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 55, 58
ApoI RAATTY 1 cut(s) 340
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 508
AxyI CCTNAGG 1 cut(s) 396
BanII GRGCYC 2 cut(s) 84, 413
Bbv12I GWGCWC 3 cut(s) 84, 299, 413
BbvI GCAGC 2 cut(s) 67, 70
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 56, 59
BlpI GCTNAGC 2 cut(s) 384, 516
BlsI GCNGC 2 cut(s) 57, 60
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 492
Bpu1102I GCTNAGC 2 cut(s) 384, 516
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 523
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 6 cut(s) 76, 140, 398, 410, 480, 525
BseNI ACTGG 1 cut(s) 475
BseXI GCAGC 2 cut(s) 67, 70
BseYI CCCAGC 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 3 cut(s) 84, 299, 413
BsiSI CCGG 2 cut(s) 524, 530
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 84, 299, 413
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 4 cut(s) 65, 233, 391, 498
Bsp1720I GCTNAGC 2 cut(s) 384, 516
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 1 cut(s) 548
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 6 cut(s) 75, 139, 397, 409, 481, 526
BspEI TCCGGA 1 cut(s) 523
BspFNI CGCG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 3 cut(s) 60, 228, 386
BspQI GCTCTTC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 4 cut(s) 65, 233, 391, 498
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 8 cut(s) 62, 89, 126, 384, 396, 489, 516, 534
BstDSI CCRYGG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 68, 236, 394, 501
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 4 cut(s) 65, 233, 391, 498
BstMWI GCNNNNNNNGC 2 cut(s) 55, 526
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 67, 70
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 531
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 208
Csp6I GTAC 3 cut(s) 352, 430, 538
CviAII CATG 1 cut(s) 358
CviQI GTAC 3 cut(s) 352, 430, 538
DdeI CTNAG 8 cut(s) 62, 89, 126, 384, 396, 489, 516, 534
DpnI GATC 4 cut(s) 67, 235, 393, 500
DpnII GATC 4 cut(s) 65, 233, 391, 498
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 2 cut(s) 82, 411
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 84, 413
Eco53kI GAGCTC 2 cut(s) 82, 411
Eco57I CTGAAG 1 cut(s) 358
Eco81I CCTNAGG 1 cut(s) 396
EcoICRI GAGCTC 2 cut(s) 82, 411
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 84, 413
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 361
FaiI YATR 5 cut(s) 113, 252, 359, 485, 605
FaqI GGGAC 1 cut(s) 181
FatI CATG 1 cut(s) 357
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 2 cut(s) 56, 59
FriOI GRGCYC 2 cut(s) 84, 413
Fsp4HI GCNGC 2 cut(s) 56, 59
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 231
GluI GCNGC 2 cut(s) 56, 59
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 524, 530
HhaI GCGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 3 cut(s) 107, 240, 310
HpaII CCGG 2 cut(s) 524, 530
HphI GGTGA 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 65, 245, 377, 490
Hpy188III TCNNGA 4 cut(s) 214, 237, 307, 524
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 1 cut(s) 259
HpyCH4V TGCA 5 cut(s) 55, 254, 321, 436, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 526
HpyF3I CTNAG 8 cut(s) 62, 89, 126, 384, 396, 489, 516, 534
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 230
Kpn2I TCCGGA 1 cut(s) 523
KroI GCCGGC 1 cut(s) 529
KroNI GCCGGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 4 cut(s) 65, 233, 391, 498
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 5 cut(s) 102, 192, 408, 473, 526
Lsp1109I GCAGC 2 cut(s) 67, 70
MaeI CTAG 1 cut(s) 32
MalI GATC 4 cut(s) 67, 235, 393, 500
MboI GATC 4 cut(s) 65, 233, 391, 498
MboII GAAGA 3 cut(s) 56, 107, 610
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 3 cut(s) 84, 299, 413
MluCI AATT 2 cut(s) 288, 340
MlyI GAGTC 2 cut(s) 234, 304
MnlI CCTC 8 cut(s) 188, 209, 221, 271, 405, 531, 552, 569
MroI TCCGGA 1 cut(s) 523
MroNI GCCGGC 1 cut(s) 529
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 2 cut(s) 524, 530
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 55, 526
NaeI GCCGGC 1 cut(s) 531
NcoI CCATGG 1 cut(s) 357
NdeII GATC 4 cut(s) 65, 233, 391, 498
NgoMIV GCCGGC 1 cut(s) 529
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 57, 60
PleI GAGTC 2 cut(s) 234, 304
PpsI GAGTC 2 cut(s) 234, 304
Psp124BI GAGCTC 2 cut(s) 84, 413
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 3 cut(s) 353, 431, 539
RsaNI GTAC 3 cut(s) 352, 430, 538
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 2 cut(s) 84, 413
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 56, 59
Sau3AI GATC 4 cut(s) 65, 233, 391, 498
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 2 cut(s) 234, 304
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 3 cut(s) 84, 299, 413
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 2 cut(s) 288, 340
SsiI CCGC 1 cut(s) 548
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 2 cut(s) 84, 413
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 357
TaqI TCGA 4 cut(s) 215, 453, 464, 480
TasI AATT 2 cut(s) 288, 340
TatI WGTACW 1 cut(s) 537
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 288
TseI GCWGC 2 cut(s) 55, 58
TspDTI ATGAA 2 cut(s) 121, 174
TspRI CASTG 1 cut(s) 288
XapI RAATTY 1 cut(s) 340
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.