pycom16g06420

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013408
Physical Location & Seq
Reverse (-)
4131479 .. 4132506
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
ATGGCGACGGAACTGGAAGAGCTAGTGGGATTTCTATCCTCTCCATCTCCAGCAGTGACAAAGGCAGCTGTTGATATCGTTCGGGGGCTAACCGGCTCCGACGACGGCCTGCAGTCTTTGGCCAATTATTCGAAGATTCTGCTTCCGTCGTTATCTCGTCTCGTAGCCGGAAACAAGGAGGTCGCGGAACCTGCAGCGGAAGCTCTTGTTAATCTTTCACAAAATTCTGGTCTAGCAGCGAAGATGGTTGACATGGGAATGATTAACGTTGCTATGGACGTTTTGTATAAGCCAGGGTCTAGCATTAGCCCATTGCTGGTTATGCTTTTAGTTAATCTCACGCAGTTGGATGTCGGTGTTACTTGTTTACTGCAGACTGGAGACGAGAAGATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCGATTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

145

Amino Acids

15.15

Weight (kDa)

4.68

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccII CGCG 1 cut(s) 185
AciI CCGC 2 cut(s) 185, 197
AclI AACGTT 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 316
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 4 cut(s) 22, 68, 203, 415
AluI AGCT 4 cut(s) 22, 68, 203, 415
Alw26I GTCTC 2 cut(s) 164, 375
AoxI GGCC 2 cut(s) 106, 120
ApeKI GCWGC 3 cut(s) 65, 194, 236
ApoI RAATTY 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AsuII TTCGAA 1 cut(s) 131
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 77, 206, 248
BccI CCATC 2 cut(s) 52, 238
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 164, 375
BfaI CTAG 3 cut(s) 23, 233, 300
BfmI CTRYAG 3 cut(s) 110, 192, 371
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 3 cut(s) 66, 195, 237
BlsI GCNGC 3 cut(s) 67, 196, 238
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 2 cut(s) 97, 189
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 381
BpmI CTGGAG 2 cut(s) 33, 399
Bpu14I TTCGAA 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 18, 382
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 34
BseBI CCWGG 1 cut(s) 294
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 18, 382
BseXI GCAGC 3 cut(s) 77, 206, 248
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 108, 122
BshVI ATCGAT 1 cut(s) 425
BsiSI CCGG 2 cut(s) 93, 168
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 164, 375
BsmBI CGTCTC 2 cut(s) 164, 375
BsnI GGCC 2 cut(s) 108, 122
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 1 cut(s) 422
BspACI CCGC 2 cut(s) 185, 197
BspANI GGCC 2 cut(s) 108, 122
BspDI ATCGAT 1 cut(s) 425
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 97, 189
BspMAI CTGCAG 3 cut(s) 114, 196, 375
BspMI ACCTGC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 2 cut(s) 18, 382
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 110
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 1 cut(s) 425
BstMAI GTCTC 2 cut(s) 164, 375
BstMBI GATC 1 cut(s) 422
BstMWI GCNNNNNNNGC 3 cut(s) 191, 200, 322
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 3 cut(s) 110, 192, 371
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 77, 206, 248
Bsu15I ATCGAT 1 cut(s) 425
BsuRI GGCC 2 cut(s) 108, 122
BsuTUI ATCGAT 1 cut(s) 425
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 92
ClaI ATCGAT 1 cut(s) 425
CviAII CATG 1 cut(s) 253
DpnI GATC 1 cut(s) 424
DpnII GATC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 402
Esp3I CGTCTC 2 cut(s) 164, 375
FaeI CATG 1 cut(s) 256
FaiI YATR 6 cut(s) 254, 275, 288, 323, 405, 410
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 66, 195, 237
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 66, 195, 237
FspBI CTAG 3 cut(s) 23, 233, 300
GluI GCNGC 3 cut(s) 66, 195, 237
GsuI CTGGAG 2 cut(s) 33, 399
HaeIII GGCC 2 cut(s) 108, 122
HapII CCGG 2 cut(s) 93, 168
Hin1II CATG 1 cut(s) 256
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 93, 168
Hpy166II GTNNAC 2 cut(s) 250, 368
Hpy188I TCNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 250, 368
Hpy99I CGWCG 4 cut(s) 10, 104, 107, 151
HpyCH4IV ACGT 2 cut(s) 267, 279
HpyCH4V TGCA 4 cut(s) 112, 194, 373, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 200, 322
HpySE526I ACGT 2 cut(s) 267, 279
Hsp92II CATG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 422
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 101
Lsp1109I GCAGC 3 cut(s) 77, 206, 248
LweI GCATC 1 cut(s) 381
MaeI CTAG 3 cut(s) 23, 233, 300
MaeII ACGT 2 cut(s) 267, 279
MaeIII GTNAC 2 cut(s) 55, 358
MalI GATC 1 cut(s) 424
MboI GATC 1 cut(s) 422
MboII GAAGA 4 cut(s) 29, 145, 253, 400
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 2 cut(s) 124, 223
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 123, 327
MnlI CCTC 2 cut(s) 49, 172
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 3 cut(s) 210, 264, 333
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 2 cut(s) 68, 197
MspI CCGG 2 cut(s) 93, 168
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 191, 200, 322
NdeII GATC 1 cut(s) 422
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 97, 189
NmuCI GTSAC 1 cut(s) 55
NspV TTCGAA 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 3 cut(s) 67, 196, 238
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 97, 189
PstI CTGCAG 3 cut(s) 114, 196, 375
PvuII CAGCTG 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 210, 264, 333
SatI GCNGC 3 cut(s) 66, 195, 237
Sau3AI GATC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 402
SetI ASST 8 cut(s) 24, 70, 183, 193, 205, 270, 282, 417
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 3 cut(s) 110, 192, 371
SfuI TTCGAA 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 124, 223
SsiI CCGC 2 cut(s) 185, 197
SspMI CTAG 3 cut(s) 23, 233, 300
StyD4I CCNGG 1 cut(s) 292
TaiI ACGT 2 cut(s) 270, 282
TaqI TCGA 2 cut(s) 131, 425
TasI AATT 2 cut(s) 124, 223
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 3 cut(s) 210, 264, 333
Tru9I TTAA 3 cut(s) 210, 264, 333
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 65, 194, 236
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 425
TspGWI ACGGA 2 cut(s) 23, 135
TspRI CASTG 1 cut(s) 60
XapI RAATTY 1 cut(s) 223
XspI CTAG 3 cut(s) 23, 233, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.