Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009409

Physical Location & Seq

Genomic Coordinates Forward (+)

4226899 .. 4228981

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGGACGGCAGATTTGGTGGGAAAATGTTGAACCGCAATTCAGCACTGATCGGGCTGATCAGTTGCTTTTGCTTTCACTCCGCGTTTCTTACTAATTTCGTCGCCGCTTCTTCTCCGGACCCGCTGCTCGGATCCACCCGCGTCGTTTTTCAGACCAACTATGGCGACATTGAATTTGGGTTCTACCCGACCGTCGCGCCGAAGACTGTGGAGCACATTTTCAAGCTTGTCCGCCTCGGCGGCTACAACACCAACCACATCTTTAGGGTTGAGAAAGGGTTCGTCGCCCAAGTGGCCGACGTGGCCAGCGGAAGGTCGGCTCCGATGAACGAGGAGCAGCGGAGGGAGGCGGTGAAGACGGTGGTCGGCGAGTTCAGTGACGTCAAGCATGTCAGGGGCATCCTCTCTATGGGAAGGCACGAAGATCCGAACAGCGCCGGATCATCCTTCTCAATGCTGCTTGGAGATTCCCCTCATCTTGATGGGAAGTATGCAATATTTGGGAAAGTTACTAAAGGTGATGAGACCTTGAAAGCACTTGAGGAACTCCCTACTCGTCGCGAAGGGATTTTCGTGATGCCCACCGAGCGCATTACAATTCTGTCAACATACTACTACGACACCGAGATGGAGAATTGCGAAGACATGAGGTCCATTATGAAGCGGAGGCTTGCTGCAGCTGCCATTGAAACTGAAAGACAGAGAATGAAATGTTTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

242

Amino Acids

26.95

Weight (kDa)

8.31

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	49 - 204	5.1e-33	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26940 AT1G26940
fragaria_vesca	FvH4_4g31590 FvH4_4g31590 FvH4_4g31590
malus_domestica	MD13G1074200.v1.1 MD16G1075600.v1.1
prunus_persica	Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1 Prupe.1G271800_v2.0.a1
pyrus_communis	pycom13g06620 pycom16g06550
rosa_chinensis	RchiOBHm_Chr4g0440101
rosa_laevigata	RLG00000006205
rosa_multiflora	Rmu_sc0001685.1_g000014
rosa_roxburghii	Rroxscaffold_5G00381040
rosa_rugosa	Rorug04G0324400
rosa_samantha	Rh4AG375100 Rh4BG387400 Rh4CG401900 Rh4DG381700
rosa_wichuraiana	Rw4G032090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
AccII	CGCG	4 cut(s)	86, 144, 200, 564
AccIII	TCCGGA	1 cut(s)	118
AclWI	GGATC	4 cut(s)	129, 142, 422, 451
AcoI	YGGCCR	2 cut(s)	297, 306
AcsI	RAATTY	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	131, 315, 412
AgsI	TTSAA	5 cut(s)	34, 176, 226, 535, 692
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	304
AluBI	AGCT	2 cut(s)	229, 683
AluI	AGCT	2 cut(s)	229, 683
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	4 cut(s)	129, 142, 422, 451
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	2 cut(s)	297, 306
ApeKI	GCWGC	6 cut(s)	127, 340, 460, 677, 680, 683
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 161, 193
Asp700I	GAANNNNTTC	2 cut(s)	281, 716
AspLEI	GCGC	3 cut(s)	202, 440, 594
AspS9I	GGNCC	2 cut(s)	121, 654
AsuHPI	GGTGA	2 cut(s)	367, 533
AvaII	GGWCC	2 cut(s)	121, 654
BalI	TGGCCA	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	134
BbsI	GAAGAC	3 cut(s)	212, 365, 651
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
BccI	CCATC	2 cut(s)	479, 625
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	521
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	441
BglI	GCCNNNNNGGC	3 cut(s)	243, 296, 305
BisI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
BlsI	GCNGC	8 cut(s)	109, 129, 245, 342, 462, 679, 682, 685
Bme18I	GGWCC	2 cut(s)	121, 654
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	121, 654
BmiI	GGNNCC	3 cut(s)	123, 136, 324
BmsI	GCATC	2 cut(s)	411, 570
BoxI	GACNNNNGTC	1 cut(s)	365
BpiI	GAAGAC	3 cut(s)	212, 365, 651
BpuEI	CTTGAG	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 315, 412
BseAI	TCCGGA	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	402, 446
BseLI	CCNNNNNNNGG	3 cut(s)	131, 315, 412
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
Bsh1236I	CGCG	4 cut(s)	86, 144, 200, 564
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	299, 308
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	119, 441
BslI	CCNNNNNNNGG	3 cut(s)	131, 315, 412
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	299, 308
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	51, 60, 134, 427, 443
Bsp68I	TCGCGA	1 cut(s)	564
BspANI	GGCC	2 cut(s)	299, 308
BspEI	TCCGGA	1 cut(s)	118
BspFNI	CGCG	4 cut(s)	86, 144, 200, 564
BspLI	GGNNCC	3 cut(s)	123, 136, 324
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	4 cut(s)	129, 142, 422, 451
BspTNI	GGTCTC	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	51, 60, 134, 427, 443
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	196, 211, 364
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	310, 675
BstF5I	GGATG	2 cut(s)	402, 446
BstFNI	CGCG	4 cut(s)	86, 144, 200, 564
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	3 cut(s)	202, 440, 594
BstKTI	GATC	5 cut(s)	54, 63, 137, 430, 446
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	5 cut(s)	51, 60, 134, 427, 443
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 296, 305, 589, 683
BstNSI	RCATGY	1 cut(s)	395
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	4 cut(s)	86, 144, 200, 564
BstV1I	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
BstV2I	GAAGAC	3 cut(s)	212, 365, 651
BstX2I	RGATCY	2 cut(s)	134, 427
BstYI	RGATCY	2 cut(s)	134, 427
BsuRI	GGCC	2 cut(s)	299, 308
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	402, 446
BtsIMutI	CAGTG	2 cut(s)	47, 385
BtuMI	TCGCGA	1 cut(s)	564
Cac8I	GCNNGC	2 cut(s)	310, 675
CfoI	GCGC	3 cut(s)	202, 440, 594
Cfr13I	GGNCC	2 cut(s)	121, 654
CseI	GACGC	1 cut(s)	133
CviAII	CATG	3 cut(s)	392, 649, 723
CviJI	RGCY	8 cut(s)	58, 229, 246, 299, 308, 323, 673, 683
CviKI_1	RGCY	8 cut(s)	58, 229, 246, 299, 308, 323, 673, 683
DpnI	GATC	5 cut(s)	53, 62, 136, 429, 445
DpnII	GATC	5 cut(s)	51, 60, 134, 427, 443
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	297, 306
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EciI	GGCGGA	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	121, 654
FaeI	CATG	3 cut(s)	395, 652, 726
FaiI	YATR	8 cut(s)	165, 393, 413, 495, 613, 650, 662, 724
FatI	CATG	3 cut(s)	391, 648, 722
FauI	CCCGC	2 cut(s)	132, 149
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
FokI	GGATG	2 cut(s)	389, 433
Fsp4HI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
GlaI	GCGC	3 cut(s)	201, 439, 593
GluI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	299, 308
HapII	CCGG	2 cut(s)	119, 441
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	3 cut(s)	202, 440, 594
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	395, 652, 726
Hin6I	GCGC	3 cut(s)	200, 438, 592
HinP1I	GCGC	3 cut(s)	200, 438, 592
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	470
HpaII	CCGG	2 cut(s)	119, 441
HphI	GGTGA	2 cut(s)	367, 533
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	4 cut(s)	134, 156, 327, 432
Hpy188III	TCNNGA	4 cut(s)	119, 482, 563, 577
Hpy8I	GTNNAC	1 cut(s)	609
Hpy99I	CGWCG	6 cut(s)	107, 149, 200, 290, 305, 564
HpyAV	CCTTC	4 cut(s)	309, 411, 460, 560
HpyCH4III	ACNGT	3 cut(s)	196, 211, 364
HpyCH4IV	ACGT	2 cut(s)	303, 384
HpyCH4V	TGCA	2 cut(s)	497, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 296, 305, 589, 683
HpySE526I	ACGT	2 cut(s)	303, 384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	395, 652, 726
HspAI	GCGC	3 cut(s)	200, 438, 592
Kpn2I	TCCGGA	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	51, 60, 134, 427, 443
LmnI	GCTCC	3 cut(s)	214, 328, 337
LpnPI	CCDG	4 cut(s)	132, 322, 382, 454
Lsp1109I	GCAGC	6 cut(s)	114, 352, 447, 664, 670, 692
LweI	GCATC	2 cut(s)	411, 570
MaeII	ACGT	2 cut(s)	303, 384
MaeIII	GTNAC	2 cut(s)	380, 511
MalI	GATC	5 cut(s)	53, 62, 136, 429, 445
MboI	GATC	5 cut(s)	51, 60, 134, 427, 443
MboII	GAAGA	5 cut(s)	105, 217, 370, 437, 656
MflI	RGATCY	2 cut(s)	134, 427
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	40, 97, 176, 600, 637
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	9 cut(s)	248, 328, 339, 343, 416, 486, 538, 645, 663
Mox20I	TGGCCA	1 cut(s)	308
MroI	TCCGGA	1 cut(s)	118
MroXI	GAANNNNTTC	2 cut(s)	281, 716
MscI	TGGCCA	1 cut(s)	308
MslI	CAYNNNNRTG	2 cut(s)	483, 629
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	4 cut(s)	127, 312, 343, 683
MspI	CCGG	2 cut(s)	119, 441
MvnI	CGCG	4 cut(s)	86, 144, 200, 564
MwoI	GCNNNNNNNGC	5 cut(s)	243, 296, 305, 589, 683
NdeII	GATC	5 cut(s)	51, 60, 134, 427, 443
NlaIII	CATG	3 cut(s)	395, 652, 726
NlaIV	GGNNCC	3 cut(s)	123, 136, 324
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	380
NruI	TCGCGA	1 cut(s)	564
NspI	RCATGY	1 cut(s)	395
PdmI	GAANNNNTTC	2 cut(s)	281, 716
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	8 cut(s)	109, 129, 245, 342, 462, 679, 682, 685
PshAI	GACNNNNGTC	1 cut(s)	365
PspN4I	GGNNCC	3 cut(s)	123, 136, 324
PspPI	GGNCC	2 cut(s)	121, 654
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	134, 427
PvuII	CAGCTG	1 cut(s)	683
RruI	TCGCGA	1 cut(s)	564
RseI	CAYNNNNRTG	2 cut(s)	483, 629
SatI	GCNGC	8 cut(s)	108, 128, 244, 341, 461, 678, 681, 684
Sau3AI	GATC	5 cut(s)	51, 60, 134, 427, 443
Sau96I	GGNCC	2 cut(s)	121, 654
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	231, 306, 320, 387, 523, 533, 656, 685
SfaNI	GCATC	2 cut(s)	411, 570
SfcI	CTRYAG	1 cut(s)	678
SfiI	GGCCNNNNNGGCC	1 cut(s)	305
SinI	GGWCC	2 cut(s)	121, 654
SmiMI	CAYNNNNRTG	2 cut(s)	483, 629
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	5 cut(s)	40, 97, 176, 600, 637
SspI	AATATT	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	196, 211, 364
TaiI	ACGT	2 cut(s)	306, 387
TasI	AATT	5 cut(s)	40, 97, 176, 600, 637
TauI	GCSGC	2 cut(s)	110, 246
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	2 cut(s)	54, 385
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	6 cut(s)	127, 340, 460, 677, 680, 683
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	4 cut(s)	17, 344, 677, 725
TspRI	CASTG	2 cut(s)	54, 385
VpaK11BI	GGWCC	2 cut(s)	121, 654
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	281, 716
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.