pycom16g07230
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012446
Physical Location & Seq
Reverse (-)
4705366 .. 4707217
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGTCTCGCACGTGCTCTCAGTGTGGGAACAACGGCCACAACTCCCGCACTTGCACGGATGCCAGCGGCGAAGTCGGTGGTGGCGCGACCGCCTCTGCCGAAAATGGCATCATGCTTTTTGGCGTTAGAGTCACGGAGGCAAACGAGTTCAGAAAGAGCGCCAGCATGAACAACTTGTCCCAGTATGAGCAGCCTCTGCAGGCCGACTCAAATGCCGACGCCGGTTACGCTTCTGACGACGTCGTCCACGCCTCTGGACACGGCCGCGAGCGCAAGAGAGGTGTTGCGTGGACGGAGGAGGAGCACAAGCTGTTCTTGGTGGGCTTACAGAAGGTCGGGAAAGGAGATTGGAGGGGGATTTCTAGGAACTTCGTGAAGACTCGTACGCCGACTCAGGTGGCGAGTCATGCTCAGAAGTACTTTCTCAGGCGCAACAACCATAACCGTCGACGCCGCAGATCTAGTCTTTTCGACATCACCACCGATACCCCTTTGAATTCATTGATGGAAGAAGATCTAGGTGAATCCTCACCAACAGTTGTACCAGTATTGCCATTCCCAATCCCACCACAGCCAGAGTCTAATTTGGGTTGCAATATTCTTGGAGGGTTTCCAGCTTCGACTTATCCGGTTGCTCCTTCTCCAGCAGCCCTGCCGGGTGAAAGCTCACCGACAGAAAGTAAGCTGACATCACTAGGATTAAACATGAAGTCATTAGATGACATGCAGCTGAGCCCGACAAAAGTCGCACAAACAACTACTAAGCTCATCCGTCCGATCCCACTTCACCCTCCGGTCGTCCCTCCTTCTTCTAAAATGGCCGGTCTTAACTTGAACAAGAAGTACTCATCGTCACCCACCAGGGATCCACTGCCATTGTCTCTGAAGCTCTCCACGACTCCGTCCGAGGAGCAATCGCCCACGACGCCGTCGCATTCGTCTGCGTTTCAGGCCATGTCTAGTGGCTCTGACAGTGTCATTAGCGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

331

Amino Acids

35.4

Weight (kDa)

8.86

Isoelectric Point (pI)

69.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 96 - 141 3.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70000 AT1G70000
fragaria_vesca FvH4_4g35340 FvH4_4g35340 FvH4_4g35340
malus_domestica MD13G1084100.v1.1 MD16G1083300.v1.1
prunus_persica Prupe.1G262700_v2.0.a1
pyrus_communis pycom13g07260 pycom16g07230
rosa_chinensis RchiOBHm_Chr4g0444961
rosa_laevigata RLG00000005783
rosa_roxburghii Rroxscaffold_5G00385450
rosa_rugosa Rorug04G0356700
rosa_samantha Rh4AG418300 Rh4BG430000 Rh4CG444800 Rh4DG426000
rosa_wichuraiana Rw4G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 448
AccII CGCG 2 cut(s) 86, 267
AciI CCGC 5 cut(s) 46, 66, 90, 265, 454
AclWI GGATC 3 cut(s) 772, 860, 873
AcoI YGGCCR 3 cut(s) 34, 262, 819
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 905
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 4 cut(s) 219, 240, 451, 926
AfaI GTAC 4 cut(s) 385, 419, 543, 845
AgsI TTSAA 2 cut(s) 496, 835
AjnI CCWGG 1 cut(s) 860
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 7 cut(s) 310, 617, 666, 685, 730, 766, 889
AluI AGCT 7 cut(s) 310, 617, 666, 685, 730, 766, 889
Alw21I GWGCWC 2 cut(s) 17, 306
Alw26I GTCTC 2 cut(s) 9, 885
AlwI GGATC 3 cut(s) 772, 860, 873
AlwNI CAGNNNCTG 1 cut(s) 196
AoxI GGCC 5 cut(s) 34, 201, 262, 819, 951
ApeKI GCWGC 3 cut(s) 190, 647, 727
ApoI RAATTY 1 cut(s) 496
AspLEI GCGC 4 cut(s) 86, 161, 273, 432
AsuC2I CCSGG 1 cut(s) 657
AsuHPI GGTGA 7 cut(s) 469, 522, 533, 660, 671, 779, 846
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BamHI GGATCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 737
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 17, 306
BbvI GCAGC 3 cut(s) 202, 659, 739
BccI CCATC 1 cut(s) 499
BceAI ACGGC 3 cut(s) 49, 277, 913
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 862
BcnI CCSGG 1 cut(s) 657
BcoDI GTCTC 2 cut(s) 9, 885
BfaI CTAG 5 cut(s) 363, 462, 518, 695, 960
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 162
BglII AGATCT 2 cut(s) 458, 514
BisI GCNGC 6 cut(s) 67, 191, 265, 454, 648, 728
BlpI GCTNAGC 1 cut(s) 731
BlsI GCNGC 6 cut(s) 68, 192, 266, 455, 649, 729
BmcAI AGTACT 2 cut(s) 419, 845
Bme1390I CCNGG 2 cut(s) 657, 862
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 2 cut(s) 657, 862
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 49, 117
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 743
BpiI GAAGAC 1 cut(s) 383
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 1 cut(s) 627
Bpu1102I GCTNAGC 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 4 cut(s) 219, 240, 451, 926
BsaJI CCNNGG 2 cut(s) 861, 906
BsaWI WCCGGW 2 cut(s) 628, 793
Bse118I RCCGGY 2 cut(s) 221, 821
Bse1I ACTGG 2 cut(s) 181, 545
BseBI CCWGG 1 cut(s) 862
BseDI CCNNGG 2 cut(s) 861, 906
BseGI GGATG 2 cut(s) 64, 768
BseMII CTCAG 5 cut(s) 32, 407, 425, 439, 722
BseNI ACTGG 2 cut(s) 181, 545
BseRI GAGGAG 3 cut(s) 311, 314, 923
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 3 cut(s) 202, 659, 739
Bsh1236I CGCG 2 cut(s) 86, 267
Bsh1285I CGRYCG 3 cut(s) 90, 265, 798
BshFI GGCC 5 cut(s) 36, 203, 264, 821, 953
BsiEI CGRYCG 3 cut(s) 90, 265, 798
BsiHKAI GWGCWC 2 cut(s) 17, 306
BsiSI CCGG 5 cut(s) 222, 629, 656, 794, 822
BsiWI CGTACG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 163, 785
BsmAI GTCTC 2 cut(s) 9, 885
BsmFI GGGAC 2 cut(s) 163, 785
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 5 cut(s) 36, 203, 264, 821, 953
Bsp1286I GDGCHC 3 cut(s) 17, 306, 737
Bsp143I GATC 4 cut(s) 458, 514, 777, 865
Bsp1720I GCTNAGC 1 cut(s) 731
BspACI CCGC 5 cut(s) 46, 66, 90, 265, 454
BspANI GGCC 5 cut(s) 36, 203, 264, 821, 953
BspCNI CTCAG 5 cut(s) 31, 406, 424, 438, 723
BspFNI CGCG 2 cut(s) 86, 267
BspLI GGNNCC 1 cut(s) 867
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 3 cut(s) 772, 860, 873
BsrFI RCCGGY 2 cut(s) 221, 821
BsrI ACTGG 2 cut(s) 181, 545
BssAI RCCGGY 2 cut(s) 221, 821
BssECI CCNNGG 2 cut(s) 861, 906
BssMI GATC 4 cut(s) 458, 514, 777, 865
BssNI GRCGYC 4 cut(s) 219, 240, 451, 926
Bst2UI CCWGG 1 cut(s) 862
Bst4CI ACNGT 3 cut(s) 446, 538, 974
BstACI GRCGYC 4 cut(s) 219, 240, 451, 926
BstAPI GCANNNNNTGC 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 4 cut(s) 64, 163, 201, 269
BstDEI CTNAG 6 cut(s) 18, 393, 411, 425, 731, 762
BstF5I GGATG 2 cut(s) 64, 768
BstFNI CGCG 2 cut(s) 86, 267
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 4 cut(s) 86, 161, 273, 432
BstKTI GATC 4 cut(s) 461, 517, 780, 868
BstMAI GTCTC 2 cut(s) 9, 885
BstMBI GATC 4 cut(s) 458, 514, 777, 865
BstMCI CGRYCG 3 cut(s) 90, 265, 798
BstMWI GCNNNNNNNGC 6 cut(s) 196, 227, 270, 407, 925, 950
BstNI CCWGG 1 cut(s) 862
BstNSI RCATGY 1 cut(s) 727
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 655, 860
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 2 cut(s) 86, 267
BstV1I GCAGC 3 cut(s) 202, 659, 739
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 3 cut(s) 458, 514, 865
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 3 cut(s) 458, 514, 865
BstZI CGGCCG 1 cut(s) 262
BsuRI GGCC 5 cut(s) 36, 203, 264, 821, 953
BtsCI GGATG 2 cut(s) 64, 768
BtsI GCAGTG 1 cut(s) 869
BtsIMutI CAGTG 3 cut(s) 26, 869, 979
Cac8I GCNNGC 4 cut(s) 64, 163, 201, 269
CaiI CAGNNNCTG 1 cut(s) 196
CfoI GCGC 4 cut(s) 86, 161, 273, 432
Cfr10I RCCGGY 2 cut(s) 221, 821
CseI GACGC 3 cut(s) 227, 459, 934
Csp6I GTAC 4 cut(s) 384, 418, 542, 844
CspCI CAANNNNNGTGG 2 cut(s) 858, 893
CviAII CATG 6 cut(s) 112, 166, 407, 706, 724, 955
CviQI GTAC 4 cut(s) 384, 418, 542, 844
DdeI CTNAG 6 cut(s) 18, 393, 411, 425, 731, 762
DpnI GATC 4 cut(s) 460, 516, 779, 867
DpnII GATC 4 cut(s) 458, 514, 777, 865
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 3 cut(s) 34, 262, 819
EagI CGGCCG 1 cut(s) 262
EclXI CGGCCG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 737
Eco52I CGGCCG 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 905
Eco72I CACGTG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 860
EcoT38I GRGCYC 1 cut(s) 737
FaeI CATG 6 cut(s) 115, 169, 410, 709, 727, 958
FaiI YATR 8 cut(s) 113, 167, 186, 408, 441, 707, 725, 956
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 2 cut(s) 163, 785
FatI CATG 6 cut(s) 111, 165, 406, 705, 723, 954
FauI CCCGC 1 cut(s) 53
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 6 cut(s) 67, 191, 265, 454, 648, 728
FokI GGATG 2 cut(s) 71, 755
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 6 cut(s) 67, 191, 265, 454, 648, 728
FspBI CTAG 5 cut(s) 363, 462, 518, 695, 960
GlaI GCGC 4 cut(s) 85, 160, 272, 431
GluI GCNGC 6 cut(s) 67, 191, 265, 454, 648, 728
GsuI CTGGAG 1 cut(s) 627
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 5 cut(s) 36, 203, 264, 821, 953
HapII CCGG 5 cut(s) 222, 629, 656, 794, 822
HgaI GACGC 3 cut(s) 227, 459, 934
HhaI GCGC 4 cut(s) 86, 161, 273, 432
Hin1I GRCGYC 4 cut(s) 219, 240, 451, 926
Hin1II CATG 6 cut(s) 115, 169, 410, 709, 727, 958
Hin6I GCGC 4 cut(s) 84, 159, 271, 430
HinP1I GCGC 4 cut(s) 84, 159, 271, 430
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HinfI GANTC 8 cut(s) 129, 206, 379, 391, 403, 524, 578, 898
HpaII CCGG 5 cut(s) 222, 629, 656, 794, 822
HphI GGTGA 7 cut(s) 469, 522, 533, 660, 671, 779, 846
Hpy166II GTNNAC 3 cut(s) 247, 291, 449
Hpy188I TCNGA 7 cut(s) 152, 235, 414, 777, 885, 907, 970
Hpy188III TCNNGA 3 cut(s) 255, 337, 373
Hpy8I GTNNAC 3 cut(s) 247, 291, 449
Hpy99I CGWCG 7 cut(s) 221, 242, 245, 450, 453, 928, 934
HpyAV CCTTC 3 cut(s) 325, 648, 816
HpyCH4III ACNGT 3 cut(s) 446, 538, 974
HpyCH4IV ACGT 2 cut(s) 11, 240
HpyCH4V TGCA 4 cut(s) 54, 199, 594, 727
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 227, 270, 407, 925, 950
HpyF3I CTNAG 6 cut(s) 18, 393, 411, 425, 731, 762
HpySE526I ACGT 2 cut(s) 11, 240
Hsp92I GRCGYC 4 cut(s) 219, 240, 451, 926
Hsp92II CATG 6 cut(s) 115, 169, 410, 709, 727, 958
HspAI GCGC 4 cut(s) 84, 159, 271, 430
Kzo9I GATC 4 cut(s) 458, 514, 777, 865
LmnI GCTCC 3 cut(s) 301, 640, 910
Lsp1109I GCAGC 3 cut(s) 202, 659, 739
LweI GCATC 2 cut(s) 49, 117
MaeI CTAG 5 cut(s) 363, 462, 518, 695, 960
MaeII ACGT 2 cut(s) 11, 240
MaeIII GTNAC 3 cut(s) 130, 224, 852
MalI GATC 4 cut(s) 460, 516, 779, 867
MboI GATC 4 cut(s) 458, 514, 777, 865
MboII GAAGA 4 cut(s) 388, 521, 524, 801
MflI RGATCY 3 cut(s) 458, 514, 865
MhlI GDGCHC 3 cut(s) 17, 306, 737
MluCI AATT 2 cut(s) 496, 583
MlyI GAGTC 7 cut(s) 138, 200, 373, 385, 412, 587, 892
MseI TTAA 3 cut(s) 701, 828, 991
MspA1I CMGCKG 2 cut(s) 66, 730
MspI CCGG 5 cut(s) 222, 629, 656, 794, 822
MspR9I CCNGG 2 cut(s) 657, 862
Mva1269I GAATGC 1 cut(s) 934
MvaI CCWGG 1 cut(s) 862
MvnI CGCG 2 cut(s) 86, 267
MwoI GCNNNNNNNGC 6 cut(s) 196, 227, 270, 407, 925, 950
NciI CCSGG 1 cut(s) 657
NdeII GATC 4 cut(s) 458, 514, 777, 865
NlaIII CATG 6 cut(s) 115, 169, 410, 709, 727, 958
NlaIV GGNNCC 1 cut(s) 867
NmuCI GTSAC 2 cut(s) 130, 852
NspI RCATGY 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 934
PfeI GAWTC 1 cut(s) 524
Pfl23II CGTACG 1 cut(s) 383
PflFI GACNNNGTC 5 cut(s) 239, 242, 901, 928, 974
PkrI GCNGC 6 cut(s) 68, 192, 266, 455, 649, 729
PleI GAGTC 7 cut(s) 137, 200, 373, 385, 411, 586, 892
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 7 cut(s) 137, 200, 373, 385, 411, 586, 892
Ppu21I YACGTR 1 cut(s) 12
PshAI GACNNNNGTC 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 860
PspCI CACGTG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 860
PspLI CGTACG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 867
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PstI CTGCAG 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 458, 514, 865
PsyI GACNNNGTC 5 cut(s) 239, 242, 901, 928, 974
PvuII CAGCTG 1 cut(s) 730
RsaI GTAC 4 cut(s) 385, 419, 543, 845
RsaNI GTAC 4 cut(s) 384, 418, 542, 844
SalI GTCGAC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 701, 828, 991
SatI GCNGC 6 cut(s) 67, 191, 265, 454, 648, 728
Sau3AI GATC 4 cut(s) 458, 514, 777, 865
ScaI AGTACT 2 cut(s) 419, 845
SchI GAGTC 7 cut(s) 138, 200, 373, 385, 412, 587, 892
ScrFI CCNGG 2 cut(s) 657, 862
SduI GDGCHC 3 cut(s) 17, 306, 737
SfaNI GCATC 2 cut(s) 49, 117
SfcI CTRYAG 1 cut(s) 197
SgrDI CGTCGACG 1 cut(s) 447
Sse9I AATT 2 cut(s) 496, 583
SsiI CCGC 5 cut(s) 46, 66, 90, 265, 454
SspI AATATT 1 cut(s) 598
SspMI CTAG 5 cut(s) 363, 462, 518, 695, 960
StyD4I CCNGG 2 cut(s) 655, 860
TaaI ACNGT 3 cut(s) 446, 538, 974
TaiI ACGT 2 cut(s) 14, 243
TaqI TCGA 3 cut(s) 448, 471, 620
TasI AATT 2 cut(s) 496, 583
TatI WGTACW 2 cut(s) 417, 843
TauI GCSGC 3 cut(s) 69, 267, 456
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 3 cut(s) 701, 828, 991
Tru9I TTAA 3 cut(s) 701, 828, 991
TscAI CASTG 3 cut(s) 26, 876, 979
TseFI GTSAC 2 cut(s) 130, 852
TseI GCWGC 3 cut(s) 190, 647, 727
Tsp45I GTSAC 2 cut(s) 130, 852
TspDTI ATGAA 3 cut(s) 182, 489, 722
TspGWI ACGGA 5 cut(s) 71, 149, 308, 761, 891
TspRI CASTG 3 cut(s) 26, 876, 979
Tth111I GACNNNGTC 5 cut(s) 239, 242, 901, 928, 974
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 5 cut(s) 363, 462, 518, 695, 960
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 2 cut(s) 419, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.