pycom16g07240

UPF0392 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014925
Physical Location & Seq
Reverse (-)
4716623 .. 4717833
1211 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
ATGGAGTTGCCAGAGCAGCGCCGCAAGCGGAAGCGCATGGTGCGGTCCTACTTACAGGCGAAGCAGTATTTGTCTCTGAGGCGACCCATCTTTCTCTGCTTCTCGTTCTTTATCTTCTTTCTGTTCGTATTATCCGACCGCTTCCGCCCGGCGTCGTTTCGGCCAGTCCTCAACGCCTCCTCCACCACCCTCTCCCTCCTCTCCTCCACCGCCAGCAACTCGATACTCGAGTCCTTCGCTGCCCACGGCAAAGAATCGCAGCCGTCGTTTCGAGTCCAAGATCGAATCTTGTTTCCCGATCACGTGCTTCTCATTGCGCCCAATCGGTTCCGCCAAGACGAGGAGTTGGAGTGCGTTTACCACAAGCAGTTCAACGGTTCGGGTGACGACATTCTTGAAGTTAAAGAAAAGAATAAGCACCTGGATTTTGCTGTTCGACCGGTTTTATCCACCGACGACTACGATGAGTTCCGGTCCATCGTCCGGTGTCCGCTGCCGCCGCTCAGTTTCTCCACAGCCATTGATTTGCGACGACGCGGCAGTTACTACTCGAGGGCTGGGACTAACGGCACGGCTTCTCCATGGAACAAGGTGGTTTACGAGGCGGTTATTGACGGAGACACGGCGGTTGTGTTCGTTAAGGGGCTGATACTCCGACCTCACAAGATAACGGATCCGACCTGGCTAAGATGTTATTTCGAGTTGGGGATTTTGGACAGAGACGAAAACCACAGCGTCTCTGTGCTCTCCACCGAAGCCGTCACCGCAGCTCAAGAAGTCGTCCGGTGCCTCCTCCCCCGGACTATCCGTAACAACCCCCACGGAATCCGAGTCACAATCGGGTACAACACCAGCCACCCCAGACCTCCAGTCCACGTCATTCTGCCTTCCGTGGCCACAATTCACAGTTCCAAATCCAATCCAGTGCAATCCAATCCGAAGAAGCACGAGCTTTGTGTTTGCACAATGCTGTGGAACCAAGCACCGGCGATTAGGGAGTGGATTATGTACCACTCATGGCTCGGCGTCGAGCGGTGGTTCCTCTACGACAACAACAGCGACGACGGAATCGAAGACGTCGTTCGGGAGCTCGATTCGCTTTTCCCACTGCGCCTTGAGAGCAAAAGACGAGTGCAATTGGGTCGGGTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

385

Amino Acids

44.23

Weight (kDa)

9.21

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 315 - 365 3.3e-09 Glycosyltransferase family 92
Glyco_tranf_2_4 PF13704 326 - 369 4.6e-06 Glycosyl transferase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27200
fragaria_vesca FvH4_4g35330
malus_domestica MD16G1083500.v1.1
prunus_persica Prupe.1G262500_v2.0.a1
pyrus_communis pycom13g07280 pycom16g07240
rosa_chinensis RchiOBHm_Chr4g0444941
rosa_laevigata RLG00000005785
rosa_multiflora Rmu_sc0011561.1_g000002 Rmu_sc0038487.1_g000001
rosa_roxburghii Rroxscaffold_5G00385430
rosa_rugosa Rorug04G0356500
rosa_samantha Rh4BG429800 Rh4CG444700 Rh4DG425900
rosa_wichuraiana Rw4G035840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1080
AccB1I GGYRCC 1 cut(s) 786
AccBSI CCGCTC 2 cut(s) 502, 1033
AccII CGCG 1 cut(s) 537
AclWI GGATC 2 cut(s) 668, 681
AcoI YGGCCR 2 cut(s) 161, 894
AcvI CACGTG 1 cut(s) 304
AcyI GRCGYC 3 cut(s) 152, 1026, 1077
AfaI GTAC 2 cut(s) 845, 1010
AfiI CCNNNNNNNGG 3 cut(s) 340, 483, 985
AgeI ACCGGT 1 cut(s) 439
AgsI TTSAA 2 cut(s) 373, 398
AhdI GACNNNNNGTC 1 cut(s) 869
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 2 cut(s) 420, 680
AluBI AGCT 3 cut(s) 770, 952, 1090
AluI AGCT 3 cut(s) 770, 952, 1090
Alw21I GWGCWC 2 cut(s) 747, 1092
Alw26I GTCTC 4 cut(s) 78, 612, 714, 742
AlwI GGATC 2 cut(s) 668, 681
Ama87I CYCGRG 2 cut(s) 227, 550
AoxI GGCC 2 cut(s) 161, 894
ApeKI GCWGC 5 cut(s) 16, 239, 259, 493, 767
AsiGI ACCGGT 1 cut(s) 439
AspLEI GCGC 4 cut(s) 21, 36, 319, 1113
AspS9I GGNCC 2 cut(s) 45, 474
AsuC2I CCSGG 2 cut(s) 149, 799
AsuHPI GGTGA 2 cut(s) 395, 754
AvaI CYCGRG 2 cut(s) 227, 550
AvaII GGWCC 2 cut(s) 45, 474
BaeI ACNNNNGTAYC 2 cut(s) 215, 248
BalI TGGCCA 1 cut(s) 896
BamHI GGATCC 1 cut(s) 673
BanI GGYRCC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 1092
BauI CACGAG 1 cut(s) 947
BbrPI CACGTG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 1080
Bbv12I GWGCWC 2 cut(s) 747, 1092
BbvI GCAGC 5 cut(s) 28, 226, 271, 480, 779
BccI CCATC 2 cut(s) 95, 485
BceAI ACGGC 6 cut(s) 247, 262, 583, 588, 639, 743
BcgI CGANNNNNNTGC 1 cut(s) 1124
BciT130I CCWGG 2 cut(s) 422, 682
BcnI CCSGG 2 cut(s) 149, 799
BcoDI GTCTC 4 cut(s) 78, 612, 714, 742
BfoI RGCGCY 1 cut(s) 22
BisI GCNGC 9 cut(s) 17, 22, 240, 260, 494, 497, 500, 538, 768
BlsI GCNGC 9 cut(s) 18, 23, 241, 261, 495, 498, 501, 539, 769
Bme1390I CCNGG 4 cut(s) 149, 422, 682, 799
Bme18I GGWCC 2 cut(s) 45, 474
BmeRI GACNNNNNGTC 1 cut(s) 869
BmeT110I CYCGRG 2 cut(s) 227, 550
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 2 cut(s) 45, 474
BmiI GGNNCC 5 cut(s) 329, 675, 788, 977, 1040
BmrFI CCNGG 4 cut(s) 149, 422, 682, 799
BpiI GAAGAC 1 cut(s) 1080
BpmI CTGGAG 1 cut(s) 852
BpuEI CTTGAG 2 cut(s) 756, 1136
BpuMI CCSGG 2 cut(s) 149, 799
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 3 cut(s) 152, 1026, 1077
BsaJI CCNNGG 5 cut(s) 244, 581, 797, 820, 891
BsaWI WCCGGW 4 cut(s) 439, 471, 483, 783
BsaXI ACNNNNNCTCC 6 cut(s) 164, 194, 335, 365, 562, 592
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 483, 985
Bse118I RCCGGY 2 cut(s) 439, 985
Bse1I ACTGG 3 cut(s) 164, 869, 923
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 422, 682
BseDI CCNNGG 5 cut(s) 244, 581, 797, 820, 891
BseLI CCNNNNNNNGG 3 cut(s) 340, 483, 985
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 68, 517
BseNI ACTGG 3 cut(s) 164, 869, 923
BseRI GAGGAG 5 cut(s) 169, 188, 193, 356, 782
BseXI GCAGC 5 cut(s) 28, 226, 271, 480, 779
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 537
Bsh1285I CGRYCG 2 cut(s) 139, 440
BshFI GGCC 2 cut(s) 163, 896
BshNI GGYRCC 1 cut(s) 786
BshTI ACCGGT 1 cut(s) 439
BsiEI CGRYCG 2 cut(s) 139, 440
BsiHKAI GWGCWC 2 cut(s) 747, 1092
BsiHKCI CYCGRG 2 cut(s) 227, 550
BsiSI CCGG 7 cut(s) 149, 440, 472, 484, 784, 799, 986
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 3 cut(s) 340, 483, 985
BsmAI GTCTC 4 cut(s) 78, 612, 714, 742
BsmBI CGTCTC 2 cut(s) 714, 742
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 2 cut(s) 163, 896
BsoBI CYCGRG 2 cut(s) 227, 550
Bsp1286I GDGCHC 2 cut(s) 747, 1092
Bsp143I GATC 3 cut(s) 280, 298, 673
Bsp19I CCATGG 1 cut(s) 581
BspANI GGCC 2 cut(s) 163, 896
BspCNI CTCAG 2 cut(s) 69, 516
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 5 cut(s) 329, 675, 788, 977, 1040
BspPI GGATC 2 cut(s) 668, 681
BspT107I GGYRCC 1 cut(s) 786
BsrBI CCGCTC 2 cut(s) 502, 1033
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 2 cut(s) 439, 985
BsrI ACTGG 3 cut(s) 164, 869, 923
BssAI RCCGGY 2 cut(s) 439, 985
BssECI CCNNGG 5 cut(s) 244, 581, 797, 820, 891
BssMI GATC 3 cut(s) 280, 298, 673
BssNI GRCGYC 3 cut(s) 152, 1026, 1077
BssSI CACGAG 1 cut(s) 947
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 947
Bst2UI CCWGG 2 cut(s) 422, 682
Bst4CI ACNGT 2 cut(s) 377, 908
BstACI GRCGYC 3 cut(s) 152, 1026, 1077
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 26, 214
BstDEI CTNAG 3 cut(s) 77, 503, 686
BstDSI CCRYGG 4 cut(s) 244, 581, 820, 891
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 4 cut(s) 21, 36, 319, 1113
BstKTI GATC 3 cut(s) 283, 301, 676
BstMAI GTCTC 4 cut(s) 78, 612, 714, 742
BstMBI GATC 3 cut(s) 280, 298, 673
BstMCI CGRYCG 2 cut(s) 139, 440
BstMWI GCNNNNNNNGC 7 cut(s) 16, 25, 40, 499, 764, 1096, 1119
BstNI CCWGG 2 cut(s) 422, 682
BstSCI CCNGG 4 cut(s) 147, 420, 680, 797
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 5 cut(s) 28, 226, 271, 480, 779
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 2 cut(s) 163, 896
BtgI CCRYGG 4 cut(s) 244, 581, 820, 891
BtrI CACGTC 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 1106
BtsIMutI CAGTG 2 cut(s) 930, 1106
Cac8I GCNNGC 2 cut(s) 26, 214
CfoI GCGC 4 cut(s) 21, 36, 319, 1113
Cfr10I RCCGGY 2 cut(s) 439, 985
Cfr13I GGNCC 2 cut(s) 45, 474
CseI GACGC 4 cut(s) 141, 543, 724, 1015
Csp6I GTAC 2 cut(s) 844, 1009
CspAI ACCGGT 1 cut(s) 439
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 3 cut(s) 37, 582, 1017
CviQI GTAC 2 cut(s) 844, 1009
DdeI CTNAG 3 cut(s) 77, 503, 686
DpnI GATC 3 cut(s) 282, 300, 675
DpnII GATC 3 cut(s) 280, 298, 673
DriI GACNNNNNGTC 1 cut(s) 869
EaeI YGGCCR 2 cut(s) 161, 894
Eam1105I GACNNNNNGTC 1 cut(s) 869
EciI GGCGGA 2 cut(s) 134, 320
Ecl136II GAGCTC 1 cut(s) 1090
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 1092
Eco47I GGWCC 2 cut(s) 45, 474
Eco53kI GAGCTC 1 cut(s) 1090
Eco72I CACGTG 1 cut(s) 304
Eco88I CYCGRG 2 cut(s) 227, 550
EcoICRI GAGCTC 1 cut(s) 1090
EcoRII CCWGG 2 cut(s) 420, 680
EcoT14I CCWWGG 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 581
Esp3I CGTCTC 2 cut(s) 714, 742
FaeI CATG 3 cut(s) 40, 585, 1020
FaiI YATR 4 cut(s) 38, 583, 1007, 1018
FaqI GGGAC 1 cut(s) 574
FatI CATG 3 cut(s) 36, 581, 1016
Fnu4HI GCNGC 9 cut(s) 17, 22, 240, 260, 494, 497, 500, 538, 768
FriOI GRGCYC 1 cut(s) 1092
Fsp4HI GCNGC 9 cut(s) 17, 22, 240, 260, 494, 497, 500, 538, 768
GlaI GCGC 4 cut(s) 20, 35, 318, 1112
GluI GCNGC 9 cut(s) 17, 22, 240, 260, 494, 497, 500, 538, 768
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 2 cut(s) 163, 896
HapII CCGG 7 cut(s) 149, 440, 472, 484, 784, 799, 986
HgaI GACGC 4 cut(s) 141, 543, 724, 1015
HhaI GCGC 4 cut(s) 21, 36, 319, 1113
Hin1I GRCGYC 3 cut(s) 152, 1026, 1077
Hin1II CATG 3 cut(s) 40, 585, 1020
Hin6I GCGC 4 cut(s) 19, 34, 317, 1111
HinP1I GCGC 4 cut(s) 19, 34, 317, 1111
HinfI GANTC 8 cut(s) 230, 254, 273, 285, 825, 831, 1068, 1094
HpaII CCGG 7 cut(s) 149, 440, 472, 484, 784, 799, 986
HphI GGTGA 2 cut(s) 395, 754
Hpy166II GTNNAC 3 cut(s) 358, 598, 874
Hpy188I TCNGA 6 cut(s) 78, 136, 656, 678, 830, 939
Hpy188III TCNNGA 4 cut(s) 296, 395, 773, 1085
Hpy8I GTNNAC 3 cut(s) 358, 598, 874
Hpy99I CGWCG 9 cut(s) 157, 268, 458, 534, 537, 1031, 1064, 1067, 1082
HpyAV CCTTC 2 cut(s) 244, 897
HpyCH4III ACNGT 2 cut(s) 377, 908
HpyCH4IV ACGT 3 cut(s) 303, 876, 1077
HpyCH4V TGCA 3 cut(s) 928, 963, 1135
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 25, 40, 499, 764, 1096, 1119
HpyF3I CTNAG 3 cut(s) 77, 503, 686
HpySE526I ACGT 3 cut(s) 303, 876, 1077
Hsp92I GRCGYC 3 cut(s) 152, 1026, 1077
Hsp92II CATG 3 cut(s) 40, 585, 1020
HspAI GCGC 4 cut(s) 19, 34, 317, 1111
Kzo9I GATC 3 cut(s) 280, 298, 673
LmnI GCTCC 1 cut(s) 1087
Lsp1109I GCAGC 5 cut(s) 28, 226, 271, 480, 779
MaeII ACGT 3 cut(s) 303, 876, 1077
MaeIII GTNAC 5 cut(s) 383, 542, 760, 809, 832
MalI GATC 3 cut(s) 282, 300, 675
MbiI CCGCTC 2 cut(s) 502, 1033
MboI GATC 3 cut(s) 280, 298, 673
MboII GAAGA 3 cut(s) 106, 952, 1085
MfeI CAATTG 1 cut(s) 1136
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 2 cut(s) 747, 1092
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 2 cut(s) 900, 1136
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 3 cut(s) 239, 282, 840
MmeI TCCRAC 4 cut(s) 159, 327, 679, 701
Mox20I TGGCCA 1 cut(s) 896
MscI TGGCCA 1 cut(s) 896
MseI TTAA 2 cut(s) 402, 639
Msp20I TGGCCA 1 cut(s) 896
MspA1I CMGCKG 1 cut(s) 493
MspI CCGG 7 cut(s) 149, 440, 472, 484, 784, 799, 986
MspR9I CCNGG 4 cut(s) 149, 422, 682, 799
MunI CAATTG 1 cut(s) 1136
MvaI CCWGG 2 cut(s) 422, 682
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 7 cut(s) 16, 25, 40, 499, 764, 1096, 1119
NciI CCSGG 2 cut(s) 149, 799
NcoI CCATGG 1 cut(s) 581
NdeII GATC 3 cut(s) 280, 298, 673
NlaIII CATG 3 cut(s) 40, 585, 1020
NlaIV GGNNCC 5 cut(s) 329, 675, 788, 977, 1040
NmeAIII GCCGAG 1 cut(s) 1002
NmuCI GTSAC 3 cut(s) 383, 760, 832
PaeR7I CTCGAG 2 cut(s) 227, 550
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 263, 1068, 1077
PfeI GAWTC 5 cut(s) 254, 285, 825, 1068, 1094
PinAI ACCGGT 1 cut(s) 439
PkrI GCNGC 9 cut(s) 18, 23, 241, 261, 495, 498, 501, 539, 769
PleI GAGTC 3 cut(s) 238, 281, 839
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 3 cut(s) 238, 281, 839
Ppu21I YACGTR 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 1092
Psp6I CCWGG 2 cut(s) 420, 680
PspCI CACGTG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 420, 680
PspN4I GGNNCC 5 cut(s) 329, 675, 788, 977, 1040
PspPI GGNCC 2 cut(s) 45, 474
PspXI VCTCGAGB 2 cut(s) 227, 550
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 845, 1010
RsaNI GTAC 2 cut(s) 844, 1009
SacI GAGCTC 1 cut(s) 1092
SaqAI TTAA 2 cut(s) 402, 639
SatI GCNGC 9 cut(s) 17, 22, 240, 260, 494, 497, 500, 538, 768
Sau3AI GATC 3 cut(s) 280, 298, 673
Sau96I GGNCC 2 cut(s) 45, 474
SchI GAGTC 3 cut(s) 239, 282, 840
ScrFI CCNGG 4 cut(s) 149, 422, 682, 799
SduI GDGCHC 2 cut(s) 747, 1092
Sfr274I CTCGAG 2 cut(s) 227, 550
SgrAI CRCCGGYG 1 cut(s) 985
SinI GGWCC 2 cut(s) 45, 474
SlaI CTCGAG 2 cut(s) 227, 550
SmlI CTYRAG 4 cut(s) 227, 550, 771, 1115
SmoI CTYRAG 4 cut(s) 227, 550, 771, 1115
Sse9I AATT 2 cut(s) 900, 1136
SstI GAGCTC 1 cut(s) 1092
StyD4I CCNGG 4 cut(s) 147, 420, 680, 797
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 2 cut(s) 377, 908
TaiI ACGT 3 cut(s) 306, 879, 1080
TasI AATT 2 cut(s) 900, 1136
TauI GCSGC 4 cut(s) 24, 499, 502, 540
TfiI GAWTC 5 cut(s) 254, 285, 825, 1068, 1094
Tru1I TTAA 2 cut(s) 402, 639
Tru9I TTAA 2 cut(s) 402, 639
TscAI CASTG 2 cut(s) 930, 1113
TseFI GTSAC 3 cut(s) 383, 760, 832
TseI GCWGC 5 cut(s) 16, 239, 259, 493, 767
Tsp45I GTSAC 3 cut(s) 383, 760, 832
TspGWI ACGGA 6 cut(s) 630, 686, 797, 837, 880, 1080
TspRI CASTG 2 cut(s) 930, 1113
VpaK11BI GGWCC 2 cut(s) 45, 474
XhoI CTCGAG 2 cut(s) 227, 550
ZraI GACGTC 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.