pycom16g08000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016320
Physical Location & Seq
Reverse (-)
5288797 .. 5289342
546 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGTCCTCCTTGCAGCCCCAGCAGCCGCAGCAGCCGCCTGTTGGCCCTGTTCTTGTTTACCCTAACAATGTCAACAAGCAGCCTTCATCTTCCCACCATTCAAACGGCTCATTCGGGACTGTTTTCATCGTGCTGGCCGTTATAATCGTCATCTCTGCCATCGCTTGCTTTCTAGGAAGGCTCTGCAACCGCCGCCTCAACAGCTCGAGACCCCATAGGCAACCGCAGCATAACTTTCGTCCCAAGAAAGAAGCTGGCCGTCCTGATGGCGGTGGTGGAGATCATCACATGGAGTTTGGCAGGGCTCCAAGCTTTCGAGCAGGCCCGAAAGTAGCAGACGTCGAATTCGGATTCGATAGGAAAAACCCGAATGCTAATAGCAGCAGCAGAGGAGAGGGCAGAGGATCCATGAATCATCATCACAACAAACCACATCATAACGGAAATGGTGAAATGGATCATCACATGAAGGGTGAAATGAACCAGCATCCTGGCGGCGACGGCGAGCATCACGTAGGAAGGGGAGATCCCAGAGCCAGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.69

Weight (kDa)

10.01

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34300
malus_domestica MD13G1093000.v1.1 MD16G1094000.v1.1
prunus_persica Prupe.1G252500_v2.0.a1
pyrus_communis pycom13g08100 pycom16g08000
rosa_chinensis RchiOBHm_Chr4g0443731
rosa_laevigata RLG00000005895
rosa_multiflora Rmu_sc0001426.1_g000003
rosa_roxburghii Rroxscaffold_5G00384300
rosa_samantha Rh4AG407000 Rh4BG417900 Rh4CG432100 Rh4DG413200
rosa_wichuraiana Rw4G034950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AatII GACGTC 1 cut(s) 342
AciI CCGC 7 cut(s) 26, 35, 190, 193, 224, 270, 495
AclWI GGATC 4 cut(s) 399, 412, 465, 521
AcoI YGGCCR 2 cut(s) 135, 256
AcsI RAATTY 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 339
AfiI CCNNNNNNNGG 2 cut(s) 41, 269
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 1 cut(s) 490
AluBI AGCT 3 cut(s) 204, 254, 312
AluI AGCT 3 cut(s) 204, 254, 312
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 4 cut(s) 399, 412, 465, 521
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 4 cut(s) 43, 135, 256, 322
ApeKI GCWGC 8 cut(s) 13, 22, 28, 31, 79, 226, 381, 384
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspS9I GGNCC 2 cut(s) 44, 323
AsuHPI GGTGA 2 cut(s) 461, 485
AvaI CYCGRG 1 cut(s) 205
BamHI GGATCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 307
BbvI GCAGC 8 cut(s) 25, 34, 40, 43, 91, 238, 393, 396
BccI CCATC 2 cut(s) 167, 260
BceAI ACGGC 4 cut(s) 121, 122, 243, 517
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 492
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 44, 323
BmiI GGNNCC 2 cut(s) 306, 406
BmrFI CCNGG 1 cut(s) 492
BmsI GCATC 2 cut(s) 496, 517
BsaAI YACGTR 1 cut(s) 514
BsaHI GRCGYC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 269
Bse1I ACTGG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 492
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 41, 269
BseNI ACTGG 1 cut(s) 537
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 8 cut(s) 25, 34, 40, 43, 91, 238, 393, 396
BseYI CCCAGC 1 cut(s) 18
BshFI GGCC 4 cut(s) 45, 137, 258, 324
BsiHKCI CYCGRG 1 cut(s) 205
BslFI GGGAC 2 cut(s) 130, 225
BslI CCNNNNNNNGG 2 cut(s) 41, 269
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 130, 225
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 4 cut(s) 45, 137, 258, 324
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 4 cut(s) 280, 404, 457, 526
BspACI CCGC 7 cut(s) 26, 35, 190, 193, 224, 270, 495
BspANI GGCC 4 cut(s) 45, 137, 258, 324
BspLI GGNNCC 2 cut(s) 306, 406
BspPI GGATC 4 cut(s) 399, 412, 465, 521
BspTNI GGTCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 537
BssMI GATC 4 cut(s) 280, 404, 457, 526
BssNI GRCGYC 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 5 cut(s) 135, 166, 256, 322, 506
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 4 cut(s) 283, 407, 460, 529
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 280, 404, 457, 526
BstMWI GCNNNNNNNGC 9 cut(s) 19, 22, 28, 31, 34, 192, 201, 226, 501
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 490
BstV1I GCAGC 8 cut(s) 25, 34, 40, 43, 91, 238, 393, 396
BstX2I RGATCY 2 cut(s) 404, 526
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 2 cut(s) 404, 526
BsuRI GGCC 4 cut(s) 45, 137, 258, 324
BtgZI GCGATG 1 cut(s) 145
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 5 cut(s) 135, 166, 256, 322, 506
Cfr13I GGNCC 2 cut(s) 44, 323
CviAII CATG 3 cut(s) 289, 409, 466
DpnI GATC 4 cut(s) 282, 406, 459, 528
DpnII GATC 4 cut(s) 280, 404, 457, 526
EaeI YGGCCR 2 cut(s) 135, 256
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 307
FaeI CATG 3 cut(s) 292, 412, 469
FaiI YATR 7 cut(s) 143, 216, 231, 290, 410, 438, 467
FaqI GGGAC 2 cut(s) 130, 225
FatI CATG 3 cut(s) 288, 408, 465
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 1 cut(s) 307
FspBI CTAG 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 4 cut(s) 45, 137, 258, 324
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 292, 412, 469
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 2 cut(s) 351, 412
HphI GGTGA 2 cut(s) 461, 485
Hpy166II GTNNAC 2 cut(s) 58, 73
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 3 cut(s) 115, 207, 263
Hpy8I GTNNAC 2 cut(s) 58, 73
Hpy99I CGWCG 2 cut(s) 344, 503
HpyAV CCTTC 4 cut(s) 93, 171, 463, 513
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 339, 513
HpyCH4V TGCA 2 cut(s) 13, 186
HpyF10VI GCNNNNNNNGC 9 cut(s) 19, 22, 28, 31, 34, 192, 201, 226, 501
HpySE526I ACGT 2 cut(s) 339, 513
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 292, 412, 469
Kzo9I GATC 4 cut(s) 280, 404, 457, 526
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 8 cut(s) 25, 34, 40, 43, 91, 238, 393, 396
LweI GCATC 2 cut(s) 496, 517
MaeI CTAG 1 cut(s) 173
MaeII ACGT 2 cut(s) 339, 513
MalI GATC 4 cut(s) 282, 406, 459, 528
MboI GATC 4 cut(s) 280, 404, 457, 526
MboII GAAGA 1 cut(s) 81
MflI RGATCY 2 cut(s) 404, 526
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 1 cut(s) 344
MnlI CCTC 5 cut(s) 16, 206, 383, 388, 395
MspR9I CCNGG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 9 cut(s) 19, 22, 28, 31, 34, 192, 201, 226, 501
NdeII GATC 4 cut(s) 280, 404, 457, 526
NlaIII CATG 3 cut(s) 292, 412, 469
NlaIV GGNNCC 2 cut(s) 306, 406
PaeR7I CTCGAG 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 351, 412
Ppu21I YACGTR 1 cut(s) 514
PsiI TTATAA 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 306, 406
PspPI GGNCC 2 cut(s) 44, 323
PsuI RGATCY 2 cut(s) 404, 526
Sau3AI GATC 4 cut(s) 280, 404, 457, 526
Sau96I GGNCC 2 cut(s) 44, 323
ScrFI CCNGG 1 cut(s) 492
SduI GDGCHC 1 cut(s) 307
SetI ASST 5 cut(s) 206, 256, 314, 342, 516
SfaNI GCATC 2 cut(s) 496, 517
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 344
SsiI CCGC 7 cut(s) 26, 35, 190, 193, 224, 270, 495
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 490
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 342, 516
TaqI TCGA 4 cut(s) 206, 316, 342, 354
TasI AATT 1 cut(s) 344
TauI GCSGC 4 cut(s) 28, 37, 195, 498
TfiI GAWTC 2 cut(s) 351, 412
TscAI CASTG 1 cut(s) 544
TseI GCWGC 8 cut(s) 13, 22, 28, 31, 79, 226, 381, 384
TspDTI ATGAA 5 cut(s) 75, 115, 425, 482, 494
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 1 cut(s) 544
XapI RAATTY 1 cut(s) 344
XhoI CTCGAG 1 cut(s) 205
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.