Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010806

Physical Location & Seq

Genomic Coordinates Forward (+)

6898524 .. 6900897

Gene Structure 2374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCAGTTCTCCCAGGAAGACTTCGATCGCCTCTTGCTCTTCGAGCACACTCGCAAAACCGCCGAAGTTAACTACGCCAAGAACCCTCGCGACGCCGATAATTTGACGAAATGGGGAGGAGCGCTGCTCGAACTGTCGCAGTTTCAGAGCATTGCGGATTCGAAGAGCATGATTACTGATTGCATCTCGAAGCTGGAGGAAGCTTTGCAGATAATTCCCACGAAGCACGATGCTCTGTGGTGCCTAGGAAATGCCCACACCTCTTTTGCATTTCTGACCCCTGATCTCGACGAGGCAAGGCCTTATTTCGATAAGGCCACTGAGTTTTTCCAGAGGGCGGCCGATGAGGACCCCGGTAACGAGCTTTATCAGAAGTCCTTAGAAGTTACATCTAAGGCACCAGAATTGCATATGGATCGATCCATAAGCATGGACTGGGACCGTTGGGTCAGCAAACTCTGGGTGGGGCACCTGCTCCTTCATCATCCAGTACAAAGAGTTCCAAGACCAAGAAGAGCAGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005744 GO:0005829 GO:0005840 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0019866 GO:0019867 GO:0022626 GO:0022804 GO:0022857 GO:0022884 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098800 GO:0098805 GO:1904680 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

176

Amino Acids

20.25

Weight (kDa)

5.62

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOM20_plant	PF06552	8 - 139	4.8e-69	Plant specific mitochondrial import receptor subunit TOM20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27390 AT1G27390
fragaria_vesca	FvH4_4g23830
malus_domestica	MD13G1118400.v1.1 MD16G1118500.v1.1
prunus_persica	Prupe.1G226600_v2.0.a1 Prupe.1G226600_v2.0.a1
pyrus_communis	pycom13g10310 pycom16g10150
rosa_chinensis	RchiOBHm_Chr4g0430391
rosa_laevigata	RLG00000006980
rosa_multiflora	Rmu_co8521431.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372180
rosa_rugosa	Rorug04G0242700 Rorug04G0242700
rosa_samantha	Rh4AG299200 Rh4BG305900 Rh4CG321800 Rh4DG303100
rosa_wichuraiana	Rw4G025970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	480
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	480
AccB1I	GGYRCC	3 cut(s)	240, 397, 468
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	60, 155, 338
AclWI	GGATC	2 cut(s)	414, 423
AcoI	YGGCCR	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	492
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	3 cut(s)	193, 203, 364
AluI	AGCT	3 cut(s)	193, 203, 364
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	414, 423
Aor51HI	AGCGCT	1 cut(s)	123
AoxI	GGCC	3 cut(s)	299, 315, 339
ApeKI	GCWGC	1 cut(s)	124
AspA2I	CCTAGG	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	349, 439
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	349, 439
AvrII	CCTAGG	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	471
BanI	GGYRCC	3 cut(s)	240, 397, 468
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	480
BisI	GCNGC	2 cut(s)	125, 339
BlnI	CCTAGG	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	126, 340
Bme1390I	CCNGG	2 cut(s)	14, 354
Bme18I	GGWCC	2 cut(s)	349, 439
BmgT120I	GGNCC	2 cut(s)	349, 439
BmiI	GGNNCC	5 cut(s)	242, 351, 399, 440, 470
BmrFI	CCNGG	2 cut(s)	14, 354
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	192, 220
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	12, 244, 352
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	440, 488
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	418
BseDI	CCNNGG	3 cut(s)	12, 244, 352
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	440, 488
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	471
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	2 cut(s)	28, 342
BshFI	GGCC	3 cut(s)	301, 317, 341
BshNI	GGYRCC	3 cut(s)	240, 397, 468
BshVI	ATCGAT	1 cut(s)	418
BsiEI	CGRYCG	2 cut(s)	28, 342
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	301, 317, 341
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	48, 471
Bsp143I	GATC	5 cut(s)	25, 283, 415, 419, 522
Bsp68I	TCGCGA	1 cut(s)	90
BspACI	CCGC	3 cut(s)	60, 155, 338
BspANI	GGCC	3 cut(s)	301, 317, 341
BspCNI	CTCAG	1 cut(s)	313
BspDI	ATCGAT	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	5 cut(s)	242, 351, 399, 440, 470
BspMI	ACCTGC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	414, 423
BspQI	GCTCTTC	3 cut(s)	44, 158, 508
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	3 cut(s)	240, 397, 468
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	440, 488
BssECI	CCNNGG	3 cut(s)	12, 244, 352
BssMI	GATC	5 cut(s)	25, 283, 415, 419, 522
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	135, 443
Bst6I	CTCTTC	3 cut(s)	44, 158, 508
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	321, 379, 393
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	5 cut(s)	28, 286, 418, 422, 525
BstMBI	GATC	5 cut(s)	25, 283, 415, 419, 522
BstMCI	CGRYCG	2 cut(s)	28, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 352
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	339
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	301, 317, 341
BsuTUI	ATCGAT	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	2 cut(s)	318, 525
BtuMI	TCGCGA	1 cut(s)	90
BveI	ACCTGC	1 cut(s)	480
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	349, 439
ClaI	ATCGAT	1 cut(s)	418
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	2 cut(s)	169, 430
CviJI	RGCY	6 cut(s)	193, 203, 301, 317, 341, 364
CviKI_1	RGCY	6 cut(s)	193, 203, 301, 317, 341, 364
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	3 cut(s)	321, 379, 393
DpnI	GATC	5 cut(s)	27, 285, 417, 421, 524
DpnII	GATC	5 cut(s)	25, 283, 415, 419, 522
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
Eam1104I	CTCTTC	3 cut(s)	44, 158, 508
EarI	CTCTTC	3 cut(s)	44, 158, 508
EclXI	CGGCCG	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	349, 439
Eco47III	AGCGCT	1 cut(s)	123
Eco52I	CGGCCG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	2 cut(s)	172, 433
FaiI	YATR	5 cut(s)	170, 411, 413, 425, 431
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	168, 429
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	125, 339
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	125, 339
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	125, 339
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	301, 317, 341
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	172, 433
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	1 cut(s)	158
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	147, 276, 372
Hpy188III	TCNNGA	4 cut(s)	89, 187, 287, 331
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	95, 293
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	2 cut(s)	135, 443
HpyCH4V	TGCA	5 cut(s)	4, 183, 208, 269, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	321, 379, 393
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	172, 433
HspAI	GCGC	1 cut(s)	122
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	25, 283, 415, 419, 522
LguI	GCTCTTC	3 cut(s)	44, 158, 508
LmnI	GCTCC	2 cut(s)	119, 480
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	192, 220
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	356, 385
MalI	GATC	5 cut(s)	27, 285, 417, 421, 524
MboI	GATC	5 cut(s)	25, 283, 415, 419, 522
MboII	GAAGA	4 cut(s)	29, 31, 175, 525
MhlI	GDGCHC	2 cut(s)	48, 471
MluCI	AATT	3 cut(s)	100, 213, 404
MnlI	CCTC	8 cut(s)	41, 96, 110, 190, 271, 286, 327, 340
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	2 cut(s)	14, 354
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	5 cut(s)	25, 283, 415, 419, 522
NlaIII	CATG	2 cut(s)	172, 433
NlaIV	GGNNCC	5 cut(s)	242, 351, 399, 440, 470
NruI	TCGCGA	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	161
PaqCI	CACCTGC	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	301
PciSI	GCTCTTC	3 cut(s)	44, 158, 508
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	126, 340
Ple19I	CGATCG	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	5 cut(s)	242, 351, 399, 440, 470
PspPI	GGNCC	2 cut(s)	349, 439
PspPPI	RGGWCCY	1 cut(s)	349
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PvuI	CGATCG	1 cut(s)	28
RruI	TCGCGA	1 cut(s)	90
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	3 cut(s)	44, 158, 508
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	125, 339
Sau3AI	GATC	5 cut(s)	25, 283, 415, 419, 522
Sau96I	GGNCC	2 cut(s)	349, 439
ScrFI	CCNGG	2 cut(s)	14, 354
SduI	GDGCHC	2 cut(s)	48, 471
SetI	ASST	5 cut(s)	195, 205, 263, 366, 474
SfaNI	GCATC	2 cut(s)	192, 220
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	2 cut(s)	349, 439
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	100, 213, 404
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	3 cut(s)	60, 155, 338
SspMI	CTAG	1 cut(s)	245
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	12, 352
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	135, 443
TaqI	TCGA	8 cut(s)	24, 42, 129, 161, 188, 288, 309, 418
TasI	AATT	3 cut(s)	100, 213, 404
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	325, 525
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	2 cut(s)	325, 525
VpaK11BI	GGWCC	2 cut(s)	349, 439
XmaJI	CCTAGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.