Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004562

Physical Location & Seq

Genomic Coordinates Reverse (-)

7093013 .. 7098186

Gene Structure 5174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGAAGAGGGAGGGTGGAATTGAAGAGGATAGAGAACAAGATCAACAGACAGGTGACCTTTGCGAAGAGAAGGAACGGACTTTTGAAGAAAGCCTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACTCTTGACAGGTACCAGAAGTGCAACTATGGAGCACCGGAGACAAATGTATCTACAAGGGAGGCCTTGGAATTGAGTAGCCAGCAGGAGTATTTGAAGCTCAAGGCACATTTTGAAGCCCTACAACGAAACCAAAGGAATCTCCTTGGAGAAGATCTTGGCCATTTAAACAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTGGACATGTCGCTGAAGCAGATCAGATCGACACGGACCCAATGCATGCTGGATAAGCTCACAGACCTTCAGCGAAATGAACACGTGCTAAACGAAGCAAACAAGACCCTGAAACAAAGGGCAAATGCCGACGAGTACGGCCACCAACAAGCTGCCGACGAGTACGGCCGCCAACAAGCTCAGGCGGCGCAGGGCGATGGCTTCTTCCATCCCTTAGACTGCGAGCCCACTTTACAGATTGGATATCAGAATGATCCAATATCCGTGGTGACAGCAGGTCCAAGCGTGAGTAATTACATGGGAGGATGGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

238

Amino Acids

26.99

Weight (kDa)

8.21

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 172	1.6e-24	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24260 AT1G24260 AT1G24260
fragaria_vesca	FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530 FvH4_4g23530
malus_domestica	MD13G1121500.v1.1 MD16G1121800.v1.1
prunus_persica	Prupe.1G223600_v2.0.a1
pyrus_communis	pycom13g10590 pycom16g10420
rosa_chinensis	RchiOBHm_Chr4g0429931
rosa_laevigata	RLG00000007020
rosa_multiflora	Rmu_sc0010155.1_g000006 Rmu_sc0035068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371760
rosa_rugosa	Rorug04G0239200 Rorug04G0239200
rosa_samantha	Rh4AG295800 Rh4BG302300 Rh4CG318000 Rh4DG299700
rosa_wichuraiana	Rw4G025620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	662
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	2 cut(s)	565, 581
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	3 cut(s)	355, 535, 562
AcuI	CTGAAG	2 cut(s)	431, 449
AcvI	CACGTG	1 cut(s)	481
AfaI	GTAC	4 cut(s)	164, 209, 533, 560
AflIII	ACRYGT	2 cut(s)	402, 478
AgsI	TTSAA	7 cut(s)	25, 88, 183, 292, 311, 380, 389
AhdI	GACNNNNNGTC	1 cut(s)	672
AluBI	AGCT	8 cut(s)	103, 160, 295, 376, 397, 454, 548, 575
AluI	AGCT	8 cut(s)	103, 160, 295, 376, 397, 454, 548, 575
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	644
AoxI	GGCC	4 cut(s)	258, 355, 535, 562
ApeKI	GCWGC	2 cut(s)	394, 548
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	432, 674
AsuHPI	GGTGA	2 cut(s)	67, 676
AvaII	GGWCC	2 cut(s)	432, 674
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbrPI	CACGTG	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	406, 535
BccI	CCATC	3 cut(s)	587, 612, 696
BceAI	ACGGC	2 cut(s)	550, 577
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	662
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	4 cut(s)	395, 549, 565, 582
BlsI	GCNGC	4 cut(s)	396, 550, 566, 583
Bme18I	GGWCC	2 cut(s)	432, 674
BmeRI	GACNNNNNGTC	1 cut(s)	672
BmgT120I	GGNCC	2 cut(s)	432, 674
BmiI	GGNNCC	2 cut(s)	209, 434
BmsI	GCATC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	481
BsaJI	CCNNGG	4 cut(s)	123, 261, 340, 660
BsaWI	WCCGGW	1 cut(s)	232
BseDI	CCNNGG	4 cut(s)	123, 261, 340, 660
BseGI	GGATG	2 cut(s)	604, 707
BseMII	CTCAG	1 cut(s)	590
BseX3I	CGGCCG	1 cut(s)	562
BseXI	GCAGC	2 cut(s)	406, 535
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	4 cut(s)	260, 357, 537, 564
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	260, 357, 537, 564
Bsp1286I	GDGCHC	2 cut(s)	232, 624
Bsp143I	GATC	5 cut(s)	42, 349, 417, 422, 649
BspACI	CCGC	2 cut(s)	565, 581
BspANI	GGCC	4 cut(s)	260, 357, 537, 564
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	209, 434
BspMI	ACCTGC	1 cut(s)	662
BspPI	GGATC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	207
BssECI	CCNNGG	4 cut(s)	123, 261, 340, 660
BssMI	GATC	5 cut(s)	42, 349, 417, 422, 649
BssT1I	CCWWGG	2 cut(s)	261, 340
Bst6I	CTCTTC	2 cut(s)	20, 62
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	4 cut(s)	188, 278, 443, 620
BstDEI	CTNAG	2 cut(s)	576, 610
BstDSI	CCRYGG	1 cut(s)	660
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	604, 707
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	5 cut(s)	45, 352, 420, 425, 652
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	5 cut(s)	42, 349, 417, 422, 649
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 451, 581
BstNSI	RCATGY	3 cut(s)	190, 406, 445
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	406, 535
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	562
BsuRI	GGCC	4 cut(s)	260, 357, 537, 564
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	2 cut(s)	132, 606
BtsCI	GGATG	2 cut(s)	604, 707
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	4 cut(s)	188, 278, 443, 620
CfoI	GCGC	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	432, 674
Csp6I	GTAC	4 cut(s)	163, 208, 532, 559
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	5 cut(s)	187, 403, 442, 694, 711
CviQI	GTAC	4 cut(s)	163, 208, 532, 559
DdeI	CTNAG	2 cut(s)	576, 610
DpnI	GATC	5 cut(s)	44, 351, 419, 424, 651
DpnII	GATC	5 cut(s)	42, 349, 417, 422, 649
DraI	TTTAAA	1 cut(s)	363
DriI	GACNNNNNGTC	1 cut(s)	672
EaeI	YGGCCR	3 cut(s)	355, 535, 562
EagI	CGGCCG	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	20, 62
Eam1105I	GACNNNNNGTC	1 cut(s)	672
EarI	CTCTTC	2 cut(s)	20, 62
EclXI	CGGCCG	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	261, 340
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	641
Eco47I	GGWCC	2 cut(s)	432, 674
Eco52I	CGGCCG	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	431, 449
Eco72I	CACGTG	1 cut(s)	481
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	641
EcoT14I	CCWWGG	2 cut(s)	261, 340
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	2 cut(s)	261, 340
FaeI	CATG	5 cut(s)	190, 406, 445, 697, 714
FaiI	YATR	6 cut(s)	188, 225, 404, 443, 695, 712
FatI	CATG	5 cut(s)	186, 402, 441, 693, 710
Fnu4HI	GCNGC	4 cut(s)	395, 549, 565, 582
FokI	GGATG	1 cut(s)	591
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	4 cut(s)	395, 549, 565, 582
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	4 cut(s)	395, 549, 565, 582
HaeIII	GGCC	4 cut(s)	260, 357, 537, 564
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	190, 406, 445, 697, 714
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	2 cut(s)	334, 380
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	67, 676
Hpy188I	TCNGA	2 cut(s)	422, 645
Hpy188III	TCNNGA	1 cut(s)	200
Hpy99I	CGWCG	2 cut(s)	530, 557
HpyAV	CCTTC	2 cut(s)	66, 473
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	174, 219, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 451, 581
HpyF3I	CTNAG	2 cut(s)	576, 610
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	5 cut(s)	190, 406, 445, 697, 714
HspAI	GCGC	1 cut(s)	584
KpnI	GGTACC	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	42, 349, 417, 422, 649
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	406, 535
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	55, 664
MalI	GATC	5 cut(s)	44, 351, 419, 424, 651
MboI	GATC	5 cut(s)	42, 349, 417, 422, 649
MboII	GAAGA	7 cut(s)	18, 37, 79, 100, 133, 359, 592
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	232, 624
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	3 cut(s)	20, 266, 688
MluNI	TGGCCA	1 cut(s)	357
MnlI	CCTC	6 cut(s)	6, 21, 118, 146, 250, 692
Mox20I	TGGCCA	1 cut(s)	357
Mph1103I	ATGCAT	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	128, 451, 581
NdeII	GATC	5 cut(s)	42, 349, 417, 422, 649
NlaIII	CATG	5 cut(s)	190, 406, 445, 697, 714
NlaIV	GGNNCC	2 cut(s)	209, 434
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	55, 664
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	3 cut(s)	190, 406, 445
PaeI	GCATGC	2 cut(s)	190, 445
PceI	AGGCCT	1 cut(s)	260
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 486
PfeI	GAWTC	2 cut(s)	334, 380
PkrI	GCNGC	4 cut(s)	396, 550, 566, 583
PmaCI	CACGTG	1 cut(s)	481
PmlI	CACGTG	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	481
PscI	ACATGT	1 cut(s)	402
PspCI	CACGTG	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	209, 434
PspPI	GGNCC	2 cut(s)	432, 674
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	4 cut(s)	164, 209, 533, 560
RsaNI	GTAC	4 cut(s)	163, 208, 532, 559
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	4 cut(s)	395, 549, 565, 582
Sau3AI	GATC	5 cut(s)	42, 349, 417, 422, 649
Sau96I	GGNCC	2 cut(s)	432, 674
SduI	GDGCHC	2 cut(s)	232, 624
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	2 cut(s)	432, 674
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	2 cut(s)	190, 445
Sse9I	AATT	3 cut(s)	20, 266, 688
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	565, 581
StuI	AGGCCT	1 cut(s)	260
StyI	CCWWGG	2 cut(s)	261, 340
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	425
TasI	AATT	3 cut(s)	20, 266, 688
TauI	GCSGC	2 cut(s)	567, 584
TfiI	GAWTC	2 cut(s)	334, 380
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseFI	GTSAC	2 cut(s)	55, 664
TseI	GCWGC	2 cut(s)	394, 548
Tsp45I	GTSAC	2 cut(s)	55, 664
TspDTI	ATGAA	1 cut(s)	489
TspGWI	ACGGA	4 cut(s)	93, 97, 445, 649
VpaK11BI	GGWCC	2 cut(s)	432, 674
XceI	RCATGY	3 cut(s)	190, 406, 445
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.