pycom16g10550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014177
Physical Location & Seq
Forward (+)
7216774 .. 7218967
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGGGGAAACTATTGTGCGATTCGACCGCCGTCGCGGAGACATTTCAAAGCCCTTCGCCGACGGTGCCGTGGAGGGACCCACCCAAGGCGTCGCCGCTTGACGAGGACACAATCTCGGCTGTAGATCTGGTTGAGCAGTCGACCGACGACGCCGCATGGGACAGCGTGGTGGGCCTGGAGGAGCAGCAGAGACGGCACCTCCAGAGGCTGCATACGAAGGGGGTGCTCTGGAAGCTCCCGGAGGATCACGACTCGTCGAAATCCGACTCTATAATGCCGCAGAAGTCGATGGTCTTCAGACTCTCGCACGGCGGCGAGGTGTCGTCCGACGGAAATTGCCTGTTCACGGCGTCGCAGAAGGCGATGAGGGTGGCGCGTGAGCTGGACGCGCGGGAGCTGAGGAGGTTGACGGTGCGGAGGTTCACGGAGGACTATGGATCTGCGGCCGCGGAGGAGAAGCGGGTGATAGACGACGCCATTCGACATATGTACGCGCCTGATCTGAAGGCCGGGTGGGGGATACATGTGATTCAGGAGGTCAAGTTGCTGGCCAAGAAAGACGAGCGCGTGAGTCTCGACTCCGCCATTGACGAGCTTCTTCAGCTCGGCATGCAGAGGGAGCTGGCAGCAGAGTCCATTTACAAGGAGAGATGTATCCCAGTGATTGATGGACAAAGTTGGGCCAAATACATGTCGATCTCTGGTTCACCGGATGATGAATACGACATCATCACATTGCAATACACAGAGGAAGGTTTATTAACCATCGACGAAAACAGAGAAGGTCATGCTGCAGCTTTCGGAGATGACATTGCAATTGAGTGTCTTGCCACAGAGTTTAAGCGAGAGATTTATGTGGTTCAAGCACATGGTTCGGATGCGATGGTTGATGAAGAGAATTGCGTTTTCTTCCTTCCCCACCGACCAAGGAGTCAAATTTGTGAACTTCCCTTCTTTCTTTTCATGAAAGGAACAGGTTGGTGTGGCGCCGGAGCTGATCACTACGAACCCCTCATTGCCCATCCTTTGTCATTAATTTCCCAGGAGAAGGTCGCGGTGGTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.75

Weight (kDa)

4.86

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13100
fragaria_vesca FvH4_4g23370 FvH4_4g23370
malus_domestica MD16G1123300.v1.1
prunus_persica Prupe.1G222300_v2.0.a1 Prupe.1G222300_v2.0.a1
pyrus_communis pycom16g10550
rosa_chinensis RchiOBHm_Chr4g0429761
rosa_laevigata RLG00000007045
rosa_multiflora Rmu_sc0001935.1_g000009
rosa_roxburghii Rroxscaffold_5G00371530
rosa_rugosa Rorug04G0237900
rosa_samantha Rh4AG294300 Rh4BG300300 Rh4CG315900 Rh4DG297400
rosa_wichuraiana Rw4G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 930
AccB1I GGYRCC 3 cut(s) 64, 195, 986
AccI GTMKAC 1 cut(s) 140
AccII CGCG 8 cut(s) 35, 376, 389, 391, 449, 494, 567, 1055
AclWI GGATC 2 cut(s) 252, 445
AcoI YGGCCR 2 cut(s) 444, 549
AcsI RAATTY 1 cut(s) 936
AcuI CTGAAG 3 cut(s) 280, 524, 584
AcyI GRCGYC 5 cut(s) 89, 150, 350, 474, 987
AfaI GTAC 2 cut(s) 491, 1062
AfiI CCNNNNNNNGG 4 cut(s) 85, 346, 516, 1048
AflIII ACRYGT 2 cut(s) 523, 690
AgsI TTSAA 2 cut(s) 47, 863
AjnI CCWGG 2 cut(s) 174, 1041
AluBI AGCT 8 cut(s) 235, 382, 397, 595, 604, 622, 797, 995
AluI AGCT 8 cut(s) 235, 382, 397, 595, 604, 622, 797, 995
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 3 cut(s) 32, 184, 578
AlwI GGATC 2 cut(s) 252, 445
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 5 cut(s) 172, 444, 507, 549, 681
ApeKI GCWGC 5 cut(s) 184, 208, 626, 791, 794
ApoI RAATTY 1 cut(s) 936
AseI ATTAAT 1 cut(s) 1034
AspLEI GCGC 5 cut(s) 376, 391, 496, 567, 989
AspS9I GGNCC 3 cut(s) 76, 172, 681
AsuC2I CCSGG 2 cut(s) 239, 511
AsuHPI GGTGA 2 cut(s) 475, 699
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 551
BanI GGYRCC 3 cut(s) 64, 195, 986
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 5 cut(s) 195, 196, 638, 778, 806
BccI CCATC 5 cut(s) 283, 662, 773, 877, 1029
BceAI ACGGC 5 cut(s) 14, 52, 209, 325, 363
BcgI CGANNNNNNTGC 4 cut(s) 205, 239, 855, 889
BciT130I CCWGG 2 cut(s) 176, 1043
BciVI GTATCC 2 cut(s) 513, 665
BclI TGATCA 1 cut(s) 997
BcnI CCSGG 2 cut(s) 239, 511
BcoDI GTCTC 3 cut(s) 32, 184, 578
BfmI CTRYAG 2 cut(s) 120, 792
BfoI RGCGCY 1 cut(s) 990
BfuI GTATCC 2 cut(s) 513, 665
BglII AGATCT 1 cut(s) 124
Bme1390I CCNGG 4 cut(s) 176, 239, 511, 1043
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 76, 172, 681
BmiI GGNNCC 5 cut(s) 66, 77, 78, 197, 988
BmrFI CCNGG 4 cut(s) 176, 239, 511, 1043
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 1 cut(s) 868
BmuI ACTGGG 1 cut(s) 653
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 2 cut(s) 185, 197
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 2 cut(s) 239, 511
BsaHI GRCGYC 5 cut(s) 89, 150, 350, 474, 987
BsaJI CCNNGG 5 cut(s) 68, 84, 447, 926, 1041
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 346, 516, 1048
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 3 cut(s) 734, 810, 1014
BseBI CCWGG 2 cut(s) 176, 1043
BseDI CCNNGG 5 cut(s) 68, 84, 447, 926, 1041
BseGI GGATG 3 cut(s) 718, 883, 1021
BseLI CCNNNNNNNGG 4 cut(s) 85, 346, 516, 1048
BseMI GCAATG 3 cut(s) 734, 810, 1014
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 3 cut(s) 194, 415, 467
BseX3I CGGCCG 1 cut(s) 444
BseXI GCAGC 5 cut(s) 195, 196, 638, 778, 806
Bsh1236I CGCG 8 cut(s) 35, 376, 389, 391, 449, 494, 567, 1055
Bsh1285I CGRYCG 3 cut(s) 27, 144, 447
BshFI GGCC 5 cut(s) 174, 446, 509, 551, 683
BshNI GGYRCC 3 cut(s) 64, 195, 986
BsiEI CGRYCG 3 cut(s) 27, 144, 447
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 4 cut(s) 239, 510, 710, 990
BslFI GGGAC 2 cut(s) 89, 173
BslI CCNNNNNNNGG 4 cut(s) 85, 346, 516, 1048
BsmAI GTCTC 3 cut(s) 32, 184, 578
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 89, 173
BsnI GGCC 5 cut(s) 174, 446, 509, 551, 683
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 6 cut(s) 124, 244, 437, 499, 696, 997
BspANI GGCC 5 cut(s) 174, 446, 509, 551, 683
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 8 cut(s) 35, 376, 389, 391, 449, 494, 567, 1055
BspHI TCATGA 1 cut(s) 963
BspLI GGNNCC 5 cut(s) 66, 77, 78, 197, 988
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 2 cut(s) 252, 445
BspT107I GGYRCC 3 cut(s) 64, 195, 986
BsrDI GCAATG 3 cut(s) 734, 810, 1014
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 5 cut(s) 68, 84, 447, 926, 1041
BssMI GATC 6 cut(s) 124, 244, 437, 499, 696, 997
BssNI GRCGYC 5 cut(s) 89, 150, 350, 474, 987
BssT1I CCWWGG 2 cut(s) 84, 926
Bst2UI CCWGG 2 cut(s) 176, 1043
Bst4CI ACNGT 2 cut(s) 64, 412
Bst6I CTCTTC 1 cut(s) 888
BstACI GRCGYC 5 cut(s) 89, 150, 350, 474, 987
BstC8I GCNNGC 3 cut(s) 549, 611, 624
BstDEI CTNAG 1 cut(s) 398
BstDSI CCRYGG 2 cut(s) 68, 447
BstF5I GGATG 3 cut(s) 718, 883, 1021
BstFNI CGCG 8 cut(s) 35, 376, 389, 391, 449, 494, 567, 1055
BstH2I RGCGCY 1 cut(s) 990
BstHHI GCGC 5 cut(s) 376, 391, 496, 567, 989
BstKTI GATC 6 cut(s) 127, 247, 440, 502, 699, 1000
BstMAI GTCTC 3 cut(s) 32, 184, 578
BstMBI GATC 6 cut(s) 124, 244, 437, 499, 696, 997
BstMCI CGRYCG 3 cut(s) 27, 144, 447
BstMWI GCNNNNNNNGC 8 cut(s) 64, 171, 193, 232, 388, 601, 610, 619
BstNI CCWGG 2 cut(s) 176, 1043
BstNSI RCATGY 3 cut(s) 527, 613, 694
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 174, 237, 509, 1041
BstSFI CTRYAG 2 cut(s) 120, 792
BstUI CGCG 8 cut(s) 35, 376, 389, 391, 449, 494, 567, 1055
BstV1I GCAGC 5 cut(s) 195, 196, 638, 778, 806
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 2 cut(s) 124, 437
BstYI RGATCY 2 cut(s) 124, 437
BstZI CGGCCG 1 cut(s) 444
BsuI GTATCC 2 cut(s) 513, 665
BsuRI GGCC 5 cut(s) 174, 446, 509, 551, 683
BtgI CCRYGG 2 cut(s) 68, 447
BtgZI GCGATG 2 cut(s) 377, 896
BtsCI GGATG 3 cut(s) 718, 883, 1021
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 3 cut(s) 549, 611, 624
CaiI CAGNNNCTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 963
CciNI GCGGCCGC 1 cut(s) 444
CfoI GCGC 5 cut(s) 376, 391, 496, 567, 989
Cfr13I GGNCC 3 cut(s) 76, 172, 681
Cfr42I CCGCGG 1 cut(s) 450
CseI GACGC 5 cut(s) 78, 158, 339, 395, 482
Csp6I GTAC 2 cut(s) 490, 1061
CviAII CATG 7 cut(s) 156, 524, 610, 691, 788, 869, 964
CviQI GTAC 2 cut(s) 490, 1061
DdeI CTNAG 1 cut(s) 398
DinI GGCGCC 1 cut(s) 988
DpnI GATC 6 cut(s) 126, 246, 439, 501, 698, 999
DpnII GATC 6 cut(s) 124, 244, 437, 499, 696, 997
DrdI GACNNNNNNGTC 1 cut(s) 930
DseDI GACNNNNNNGTC 1 cut(s) 930
EaeI YGGCCR 2 cut(s) 444, 549
EagI CGGCCG 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 888
EarI CTCTTC 1 cut(s) 888
EciI GGCGGA 1 cut(s) 571
EclXI CGGCCG 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 84, 926
Eco47I GGWCC 1 cut(s) 76
Eco52I CGGCCG 1 cut(s) 444
Eco57I CTGAAG 3 cut(s) 280, 524, 584
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 174, 1041
EcoT14I CCWWGG 2 cut(s) 84, 926
EgeI GGCGCC 1 cut(s) 988
EheI GGCGCC 1 cut(s) 988
ErhI CCWWGG 2 cut(s) 84, 926
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 7 cut(s) 159, 527, 613, 694, 791, 872, 967
FaqI GGGAC 2 cut(s) 89, 173
FatI CATG 7 cut(s) 155, 523, 609, 690, 787, 868, 963
FauI CCCGC 2 cut(s) 384, 453
FauNDI CATATG 1 cut(s) 486
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 1 cut(s) 140
FokI GGATG 3 cut(s) 725, 890, 1008
GlaI GCGC 5 cut(s) 375, 390, 495, 566, 988
GsuI CTGGAG 2 cut(s) 185, 197
HaeII RGCGCY 1 cut(s) 990
HaeIII GGCC 5 cut(s) 174, 446, 509, 551, 683
HapII CCGG 4 cut(s) 239, 510, 710, 990
HgaI GACGC 5 cut(s) 78, 158, 339, 395, 482
HhaI GCGC 5 cut(s) 376, 391, 496, 567, 989
Hin1I GRCGYC 5 cut(s) 89, 150, 350, 474, 987
Hin1II CATG 7 cut(s) 159, 527, 613, 694, 791, 872, 967
Hin6I GCGC 5 cut(s) 374, 389, 494, 565, 987
HinP1I GCGC 5 cut(s) 374, 389, 494, 565, 987
HincII GTYRAC 2 cut(s) 141, 408
HindII GTYRAC 2 cut(s) 141, 408
HinfI GANTC 9 cut(s) 20, 251, 266, 300, 529, 571, 578, 632, 931
HpaII CCGG 4 cut(s) 239, 510, 710, 990
HphI GGTGA 2 cut(s) 475, 699
Hpy166II GTNNAC 6 cut(s) 141, 345, 408, 423, 707, 944
Hpy188I TCNGA 7 cut(s) 265, 299, 328, 504, 803, 877, 1067
Hpy188III TCNNGA 6 cut(s) 202, 229, 248, 533, 575, 964
Hpy8I GTNNAC 6 cut(s) 141, 345, 408, 423, 707, 944
HpyAV CCTTC 9 cut(s) 63, 211, 352, 499, 746, 776, 923, 961, 1042
HpyCH4III ACNGT 2 cut(s) 64, 412
HpyCH4V TGCA 5 cut(s) 211, 613, 739, 794, 815
HpyF10VI GCNNNNNNNGC 8 cut(s) 64, 171, 193, 232, 388, 601, 610, 619
HpyF3I CTNAG 1 cut(s) 398
Hsp92I GRCGYC 5 cut(s) 89, 150, 350, 474, 987
Hsp92II CATG 7 cut(s) 159, 527, 613, 694, 791, 872, 967
HspAI GCGC 5 cut(s) 374, 389, 494, 565, 987
KasI GGCGCC 1 cut(s) 986
KflI GGGWCCC 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 997
KspI CCGCGG 1 cut(s) 450
Kzo9I GATC 6 cut(s) 124, 244, 437, 499, 696, 997
LmnI GCTCC 5 cut(s) 181, 240, 394, 619, 992
Lsp1109I GCAGC 5 cut(s) 195, 196, 638, 778, 806
LweI GCATC 1 cut(s) 868
MalI GATC 6 cut(s) 126, 246, 439, 501, 698, 999
MboI GATC 6 cut(s) 124, 244, 437, 499, 696, 997
MboII GAAGA 4 cut(s) 286, 590, 901, 905
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 2 cut(s) 124, 437
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 5 cut(s) 334, 816, 898, 936, 1035
MluNI TGGCCA 1 cut(s) 551
Mly113I GGCGCC 1 cut(s) 987
MlyI GAGTC 7 cut(s) 245, 260, 294, 572, 580, 641, 940
MmeI TCCRAC 2 cut(s) 288, 351
Mox20I TGGCCA 1 cut(s) 551
MscI TGGCCA 1 cut(s) 551
MseI TTAA 3 cut(s) 761, 840, 1034
Msp20I TGGCCA 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 4 cut(s) 239, 510, 710, 990
MspR9I CCNGG 4 cut(s) 176, 239, 511, 1043
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 2 cut(s) 176, 1043
MvnI CGCG 8 cut(s) 35, 376, 389, 391, 449, 494, 567, 1055
MwoI GCNNNNNNNGC 8 cut(s) 64, 171, 193, 232, 388, 601, 610, 619
NarI GGCGCC 1 cut(s) 987
NciI CCSGG 2 cut(s) 239, 511
NdeI CATATG 1 cut(s) 486
NdeII GATC 6 cut(s) 124, 244, 437, 499, 696, 997
NlaIII CATG 7 cut(s) 159, 527, 613, 694, 791, 872, 967
NlaIV GGNNCC 5 cut(s) 66, 77, 78, 197, 988
NmeAIII GCCGAG 2 cut(s) 95, 585
NotI GCGGCCGC 1 cut(s) 444
NspI RCATGY 3 cut(s) 527, 613, 694
PaeI GCATGC 1 cut(s) 613
PagI TCATGA 1 cut(s) 963
PciI ACATGT 2 cut(s) 523, 690
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 2 cut(s) 20, 529
PfoI TCCNGGA 1 cut(s) 237
PleI GAGTC 7 cut(s) 245, 260, 294, 572, 579, 640, 939
PluTI GGCGCC 1 cut(s) 990
PpsI GAGTC 7 cut(s) 245, 260, 294, 572, 579, 640, 939
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 2 cut(s) 523, 690
PshAI GACNNNNGTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 1034
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 174, 1041
PspGI CCWGG 2 cut(s) 174, 1041
PspN4I GGNNCC 5 cut(s) 66, 77, 78, 197, 988
PspPI GGNCC 3 cut(s) 76, 172, 681
PspPPI RGGWCCY 1 cut(s) 76
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 124, 437
RsaI GTAC 2 cut(s) 491, 1062
RsaNI GTAC 2 cut(s) 490, 1061
SacII CCGCGG 1 cut(s) 450
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 761, 840, 1034
Sau3AI GATC 6 cut(s) 124, 244, 437, 499, 696, 997
Sau96I GGNCC 3 cut(s) 76, 172, 681
SchI GAGTC 7 cut(s) 245, 260, 294, 572, 580, 641, 940
ScrFI CCNGG 4 cut(s) 176, 239, 511, 1043
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 1 cut(s) 868
SfcI CTRYAG 2 cut(s) 120, 792
SfoI GGCGCC 1 cut(s) 988
Sfr303I CCGCGG 1 cut(s) 450
SgrBI CCGCGG 1 cut(s) 450
SinI GGWCC 1 cut(s) 76
SphI GCATGC 1 cut(s) 613
Sse9I AATT 5 cut(s) 334, 816, 898, 936, 1035
SspDI GGCGCC 1 cut(s) 986
StyD4I CCNGG 4 cut(s) 174, 237, 509, 1041
StyI CCWWGG 2 cut(s) 84, 926
TaaI ACNGT 2 cut(s) 64, 412
TaqI TCGA 8 cut(s) 23, 140, 257, 287, 481, 576, 695, 768
TaqII GACCGA 1 cut(s) 158
TasI AATT 5 cut(s) 334, 816, 898, 936, 1035
TauI GCSGC 6 cut(s) 97, 155, 280, 315, 446, 449
TfiI GAWTC 2 cut(s) 20, 529
Tru1I TTAA 3 cut(s) 761, 840, 1034
Tru9I TTAA 3 cut(s) 761, 840, 1034
TscAI CASTG 1 cut(s) 666
TseI GCWGC 5 cut(s) 184, 208, 626, 791, 794
TspDTI ATGAA 4 cut(s) 732, 906, 952, 980
TspGWI ACGGA 2 cut(s) 345, 440
TspRI CASTG 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 76
VspI ATTAAT 1 cut(s) 1034
XapI RAATTY 1 cut(s) 936
XceI RCATGY 3 cut(s) 527, 613, 694
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.