Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009386

Physical Location & Seq

Genomic Coordinates Forward (+)

8081696 .. 8086236

Gene Structure 4541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11630.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGGGTAAAGGAATATGGATTCACTGGGCGATCATGGCGCTTCACGTCGTCGCCATTCTCTTATTCACCAGAGGTTTTCTTCTCACCCGGACGGAGCTTCCCTTTTACAGCAACTGCTCCGACGCTTCCCAATCGCCTTGCTCATACTCCGTTCCAGAAACCCAGAACCGGAATGACACCGTTGAGCCGAATCAGCAGCGTTGCTGGAGCAAGCCTGCTGTTGGGCGGCTTGTAATCATCGTTTTCGACGCTCTCAGGTTTGATTTTGTAGCTCCGAGTACTTTCTTTCAGGAATTGAAGCCATGGATGAACAAATTACAGCTTATACAAGACCTAGCAGCTAGAAATGCATCGTCTGCTCTGATTTTCAAAGCCATAGCTGATCCGCCCACGACGAGTTTGCAGCGTTTGAAGGGCTTGACAACCGGTGGATTGCCGACTTTTATTGATGTTGGGAACAGCTTTGGTGCTCCAGCTATAGTTGAAGATAACTTGATACATCAGTTGGCTAAAAATGGAAAGCGAGTTGTGATGATGGGGGATGATACATGGACGCAGTTGTTTCCTCATCACTTTGAAAAATCTTTTCCTTACCCCTCTTTTAATGTTAGAGATCTTGATACGGTGGACAACGGATGCATTGACCACCTTCTTCCATTCTTGTACCAAGAAGATTGGGATGTTCTTATCGCACACTTTCTTGGAGTGGATCATGCTGGGCACATATTTGGGGTTGATTCTGTGCAAATGATAGAAAAGTTGGAGCAATATAACAACGTCTTGCTGAAAGTAGTTGAAGCATTGGAGAGGCAGTCTGCGCCAGGGGGCATACATGACAATACTCTTCTACTTGTGATGGGCGATCATGGTCAGACTGTGAATGGAGATCATGGTGGAGGAAGTGCTGAAGAGGTTGAGACATCCATGTTTGCTGTGAGCTTTAAGAATCCTCCATCTCCCATACCATTAGAGTTTGATACTTCATCTTGTGAACTAGACTTGGATGGGAGGAATATATGTGCCAGTTCCTTCCAGCAGCTTGACTTTGCAGTGACAATATCGGCGCTTCTTGGTATCCCCTTTCCTTTTGGAAGTATTGGGCGAGTTAATCCTCAGCTATACGCTTTAGGTGCTGGAACATGGAATTTTGAAGATAGTGTGGGCAATTCCCAAAGTCATTCAAAGTTGGAACAATGGATGCTGAATTATGCCAATGTACTCTGCACCAATTCTTGGCAGGTAAAAAGATATATAGATATTTATTCAGCTTCATCAGTTATTGGATTTTCCCACGAAGACTTGTTACACATAGCAGACATGTATGCTAAAGCAGAAGAGAAATGGTCACATACTACAAAGAAATTGCTGTCACATGAAAAGGAAAGCCAGAATGAATTATTGCCTGCTCTTAAGAGGCAAATTGATTTGTATTCTGATTTCCTGGCAAGTGTTGCTGAACTTGCACGCTCCAAATGGACCGAGTTTAATTTAAAGATGATGGGTGCTGGACTTGGCATTATGTTGATGTCACTTCTTATGCATTTTATTGCAATTAAGAAAGCAGCTTCCTCTCGAATAGTTTTATCTTGGAAGAAGGAAAAGCTGCATGCTTTCTTTTGGCCACAACTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Phosphodiest

Protein Analysis

545

Amino Acids

60.87

Weight (kDa)

5.67

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17250
fragaria_vesca	FvH4_4g21830 FvH4_4g21830 FvH4_4g21830
malus_domestica	MD13G1136600.v1.1 MD16G1131900.v1.1
prunus_persica	Prupe.1G208800_v2.0.a1 Prupe.1G208800_v2.0.a1 Prupe.1G208800_v2.0.a1 Prupe.1G208800_v2.0.a1
pyrus_communis	pycom13g11900 pycom16g11630
rosa_chinensis	RchiOBHm_Chr4g0428061
rosa_laevigata	RLG00000007185
rosa_multiflora	Rmu_sc0005263.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369780
rosa_rugosa	Rorug04G0222100
rosa_samantha	Rh4AG279200 Rh4BG284600 Rh4CG300300 Rh4DG281700
rosa_wichuraiana	Rw4G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1228
AccB7I	CCANNNNNTGG	1 cut(s)	1233
AciI	CCGC	2 cut(s)	226, 386
AclWI	GGATC	2 cut(s)	377, 717
AcoI	YGGCCR	1 cut(s)	1619
AcsI	RAATTY	1 cut(s)	1144
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	3 cut(s)	280, 665, 1218
AfiI	CCNNNNNNNGG	3 cut(s)	168, 221, 1233
AflII	CTTAAG	1 cut(s)	1409
AflIII	ACRYGT	1 cut(s)	1317
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	8 cut(s)	298, 370, 412, 485, 578, 797, 1151, 1182
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	820, 1440
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	911
AlwI	GGATC	2 cut(s)	377, 717
AlwNI	CAGNNNCTG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	1619
ApeKI	GCWGC	6 cut(s)	196, 338, 403, 1036, 1562, 1603
ApoI	RAATTY	1 cut(s)	1144
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	40, 820, 1066
AspS9I	GGNCC	1 cut(s)	1476
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	58, 76
AvaII	GGWCC	1 cut(s)	1476
BaeGI	GKGCMC	1 cut(s)	723
BaeI	ACNNNNGTAYC	2 cut(s)	488, 521
BalI	TGGCCA	1 cut(s)	1621
BarI	GAAGNNNNNNTAC	2 cut(s)	1287, 1319
BbsI	GAAGAC	1 cut(s)	1302
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	1113
BbvI	GCAGC	6 cut(s)	208, 350, 415, 1048, 1574, 1590
BccI	CCATC	5 cut(s)	529, 850, 961, 998, 1492
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	2 cut(s)	822, 1442
BciVI	GTATCC	1 cut(s)	1085
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	3 cut(s)	335, 342, 995
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	2 cut(s)	41, 1067
BfrI	CTTAAG	1 cut(s)	1409
BfuAI	ACCTGC	1 cut(s)	1228
BfuI	GTATCC	1 cut(s)	1085
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	7 cut(s)	197, 227, 339, 404, 1037, 1563, 1604
BlsI	GCNGC	7 cut(s)	198, 228, 340, 405, 1038, 1564, 1605
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	88, 822, 1442
Bme18I	GGWCC	1 cut(s)	1476
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	1476
BmrFI	CCNGG	3 cut(s)	88, 822, 1442
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	3 cut(s)	359, 626, 1188
BmuI	ACTGGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	1302
BpmI	CTGGAG	2 cut(s)	226, 456
Bpu10I	CCTNAGC	1 cut(s)	1113
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	302, 821
BsaWI	WCCGGW	2 cut(s)	168, 425
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 221, 1233
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	29, 1023, 1632
BseBI	CCWGG	2 cut(s)	822, 1442
BseDI	CCNNGG	2 cut(s)	302, 821
BseGI	GGATG	7 cut(s)	312, 547, 641, 685, 920, 1009, 1203
BseLI	CCNNNNNNNGG	3 cut(s)	168, 221, 1233
BseMII	CTCAG	2 cut(s)	268, 1127
BseNI	ACTGG	3 cut(s)	29, 1023, 1632
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	6 cut(s)	208, 350, 415, 1048, 1574, 1590
BseYI	CCCAGC	1 cut(s)	716
BsgI	GTGCAG	1 cut(s)	1207
BshFI	GGCC	1 cut(s)	1621
BshTI	ACCGGT	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	3 cut(s)	88, 169, 426
BslI	CCNNNNNNNGG	3 cut(s)	168, 221, 1233
BsmAI	GTCTC	1 cut(s)	911
BsnI	GGCC	1 cut(s)	1621
Bsp1286I	GDGCHC	2 cut(s)	472, 723
Bsp143I	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	2 cut(s)	226, 386
BspANI	GGCC	1 cut(s)	1621
BspCNI	CTCAG	2 cut(s)	267, 1126
BspMI	ACCTGC	1 cut(s)	1228
BspPI	GGATC	2 cut(s)	377, 717
BspTI	CTTAAG	1 cut(s)	1409
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	29, 1023, 1632
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	302, 821
BssMI	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	822, 1442
Bst4CI	ACNGT	3 cut(s)	181, 625, 877
Bst6I	CTCTTC	3 cut(s)	849, 903, 1329
BstAFI	CTTAAG	1 cut(s)	1409
BstAPI	GCANNNNNTGC	2 cut(s)	356, 1451
BstC8I	GCNNGC	5 cut(s)	212, 216, 1404, 1465, 1608
BstDEI	CTNAG	2 cut(s)	254, 1113
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	7 cut(s)	312, 547, 641, 685, 920, 1009, 1203
BstH2I	RGCGCY	2 cut(s)	41, 1067
BstHHI	GCGC	3 cut(s)	40, 820, 1066
BstKTI	GATC	6 cut(s)	33, 385, 616, 712, 865, 889
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 193, 347, 356, 817, 1130, 1451, 1460
BstNI	CCWGG	2 cut(s)	822, 1442
BstNSI	RCATGY	2 cut(s)	1321, 1610
BstSCI	CCNGG	3 cut(s)	86, 820, 1440
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	723
BstV1I	GCAGC	6 cut(s)	208, 350, 415, 1048, 1574, 1590
BstV2I	GAAGAC	1 cut(s)	1302
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuI	GTATCC	1 cut(s)	1085
BsuRI	GGCC	1 cut(s)	1621
BtgI	CCRYGG	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	7 cut(s)	312, 547, 641, 685, 920, 1009, 1203
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	2 cut(s)	22, 1056
BveI	ACCTGC	1 cut(s)	1228
Cac8I	GCNNGC	5 cut(s)	212, 216, 1404, 1465, 1608
CaiI	CAGNNNCTG	1 cut(s)	114
CfoI	GCGC	3 cut(s)	40, 820, 1066
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	1476
CseI	GACGC	3 cut(s)	131, 257, 562
Csp6I	GTAC	3 cut(s)	279, 664, 1217
CspAI	ACCGGT	1 cut(s)	425
CviQI	GTAC	3 cut(s)	279, 664, 1217
DdeI	CTNAG	2 cut(s)	254, 1113
DpnI	GATC	6 cut(s)	32, 384, 615, 711, 864, 888
DpnII	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
DraI	TTTAAA	1 cut(s)	1491
EaeI	YGGCCR	1 cut(s)	1619
Eam1104I	CTCTTC	3 cut(s)	849, 903, 1329
EarI	CTCTTC	3 cut(s)	849, 903, 1329
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	1476
Eco57I	CTGAAG	1 cut(s)	927
EcoRII	CCWGG	2 cut(s)	820, 1440
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	3 cut(s)	352, 641, 1542
ErhI	CCWWGG	1 cut(s)	302
Fnu4HI	GCNGC	7 cut(s)	197, 227, 339, 404, 1037, 1563, 1604
FokI	GGATG	7 cut(s)	319, 554, 648, 692, 907, 1016, 1210
Fsp4HI	GCNGC	7 cut(s)	197, 227, 339, 404, 1037, 1563, 1604
FspBI	CTAG	3 cut(s)	335, 342, 995
GlaI	GCGC	3 cut(s)	39, 819, 1065
GluI	GCNGC	7 cut(s)	197, 227, 339, 404, 1037, 1563, 1604
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	2 cut(s)	226, 456
HaeII	RGCGCY	2 cut(s)	41, 1067
HaeIII	GGCC	1 cut(s)	1621
HapII	CCGG	3 cut(s)	88, 169, 426
HgaI	GACGC	3 cut(s)	131, 257, 562
HhaI	GCGC	3 cut(s)	40, 820, 1066
Hin6I	GCGC	3 cut(s)	38, 818, 1064
HinP1I	GCGC	3 cut(s)	38, 818, 1064
HinfI	GANTC	4 cut(s)	19, 190, 737, 946
HpaII	CCGG	3 cut(s)	88, 169, 426
HphI	GGTGA	2 cut(s)	58, 76
Hpy166II	GTNNAC	2 cut(s)	628, 992
Hpy188I	TCNGA	5 cut(s)	121, 276, 363, 873, 1435
Hpy188III	TCNNGA	4 cut(s)	155, 290, 617, 1572
Hpy8I	GTNNAC	2 cut(s)	628, 992
Hpy99I	CGWCG	5 cut(s)	50, 53, 125, 251, 397
HpyAV	CCTTC	4 cut(s)	406, 659, 1039, 1588
HpyCH4III	ACNGT	3 cut(s)	181, 625, 877
HpyCH4IV	ACGT	2 cut(s)	45, 777
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 193, 347, 356, 817, 1130, 1451, 1460
HpyF3I	CTNAG	2 cut(s)	254, 1113
HpySE526I	ACGT	2 cut(s)	45, 777
HspAI	GCGC	3 cut(s)	38, 818, 1064
Kzo9I	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
LmnI	GCTCC	7 cut(s)	94, 122, 207, 277, 475, 763, 1472
Lsp1109I	GCAGC	6 cut(s)	208, 350, 415, 1048, 1574, 1590
LweI	GCATC	3 cut(s)	359, 626, 1188
MaeI	CTAG	3 cut(s)	335, 342, 995
MaeII	ACGT	2 cut(s)	45, 777
MaeIII	GTNAC	5 cut(s)	1051, 1302, 1344, 1368, 1527
MalI	GATC	6 cut(s)	32, 384, 615, 711, 864, 888
MboI	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	2 cut(s)	472, 723
MlsI	TGGCCA	1 cut(s)	1621
MluNI	TGGCCA	1 cut(s)	1621
MmeI	TCCRAC	3 cut(s)	144, 741, 1167
Mox20I	TGGCCA	1 cut(s)	1621
Mph1103I	ATGCAT	3 cut(s)	352, 641, 1542
MscI	TGGCCA	1 cut(s)	1621
MseI	TTAA	7 cut(s)	603, 942, 1107, 1410, 1485, 1490, 1554
Msp20I	TGGCCA	1 cut(s)	1621
MspCI	CTTAAG	1 cut(s)	1409
MspI	CCGG	3 cut(s)	88, 169, 426
MspR9I	CCNGG	3 cut(s)	88, 822, 1442
MvaI	CCWGG	2 cut(s)	822, 1442
MwoI	GCNNNNNNNGC	8 cut(s)	35, 193, 347, 356, 817, 1130, 1451, 1460
NciI	CCSGG	1 cut(s)	88
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
NmuCI	GTSAC	4 cut(s)	1051, 1344, 1368, 1527
NsiI	ATGCAT	3 cut(s)	352, 641, 1542
NspI	RCATGY	2 cut(s)	1321, 1610
PaeI	GCATGC	1 cut(s)	1610
PciI	ACATGT	1 cut(s)	1317
PfeI	GAWTC	4 cut(s)	19, 190, 737, 946
PflMI	CCANNNNNTGG	1 cut(s)	1233
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	7 cut(s)	198, 228, 340, 405, 1038, 1564, 1605
PscI	ACATGT	1 cut(s)	1317
Psp6I	CCWGG	2 cut(s)	820, 1440
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	820, 1440
PspPI	GGNCC	1 cut(s)	1476
PstNI	CAGNNNCTG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	280, 665, 1218
RsaNI	GTAC	3 cut(s)	279, 664, 1217
SaqAI	TTAA	7 cut(s)	603, 942, 1107, 1410, 1485, 1490, 1554
SatI	GCNGC	7 cut(s)	197, 227, 339, 404, 1037, 1563, 1604
Sau3AI	GATC	6 cut(s)	30, 382, 613, 709, 862, 886
Sau96I	GGNCC	1 cut(s)	1476
ScaI	AGTACT	1 cut(s)	280
ScrFI	CCNGG	3 cut(s)	88, 822, 1442
SduI	GDGCHC	2 cut(s)	472, 723
SfaNI	GCATC	3 cut(s)	359, 626, 1188
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	1476
SmlI	CTYRAG	1 cut(s)	1409
SmoI	CTYRAG	1 cut(s)	1409
SphI	GCATGC	1 cut(s)	1610
SsiI	CCGC	2 cut(s)	226, 386
SspMI	CTAG	3 cut(s)	335, 342, 995
StyD4I	CCNGG	3 cut(s)	86, 820, 1440
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	181, 625, 877
TaiI	ACGT	2 cut(s)	48, 780
TaqI	TCGA	2 cut(s)	246, 1573
TaqII	GACCGA	1 cut(s)	1493
TatI	WGTACW	2 cut(s)	278, 1216
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	4 cut(s)	19, 190, 737, 946
Tru1I	TTAA	7 cut(s)	603, 942, 1107, 1410, 1485, 1490, 1554
Tru9I	TTAA	7 cut(s)	603, 942, 1107, 1410, 1485, 1490, 1554
TscAI	CASTG	2 cut(s)	29, 1056
TseFI	GTSAC	4 cut(s)	1051, 1344, 1368, 1527
TseI	GCWGC	6 cut(s)	196, 338, 403, 1036, 1562, 1603
Tsp45I	GTSAC	4 cut(s)	1051, 1344, 1368, 1527
TspDTI	ATGAA	5 cut(s)	323, 972, 1260, 1389, 1407
TspGWI	ACGGA	3 cut(s)	107, 139, 648
TspRI	CASTG	2 cut(s)	29, 1056
Van91I	CCANNNNNTGG	1 cut(s)	1233
Vha464I	CTTAAG	1 cut(s)	1409
VpaK11BI	GGWCC	1 cut(s)	1476
XapI	RAATTY	1 cut(s)	1144
XceI	RCATGY	2 cut(s)	1321, 1610
XspI	CTAG	3 cut(s)	335, 342, 995
ZrmI	AGTACT	1 cut(s)	280
Zsp2I	ATGCAT	3 cut(s)	352, 641, 1542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.