pycom16g13290

calmodulin-binding transcription activator

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
9444362 .. 9446610
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1440 bp
ATGAGTATTGATGGCCATAAACCCATCAGCCAAGTACTAAACTTCGAATATCGTGCTCCTGTTTTGAGTGATACAGTAGTTTCTTCAGAAGATAACAAATGGGAAGAATTCCAAGTACAGATGCGGCTTGCTTATTTGCTTTTCTCCTCATCTAAGAGCCTTAACATTATATCTAGTAAAGTGCCCCCGAATGCCCTGCAAGAAGCCAAGAAGTTTTCCCACAGAACCTCTCACATATCTAATAGCTGGCCATATTTGATGAAGGCATTTGAAGAGAACAAAACTCCCTTACCGCTGGCAAAGGATAGTCTGTTTGAACTAATTTTGAGGAACAGGCTAAAGGATTGGCTGTTGGAGAAAGTTGTTGAGGTCTCTAAAACCAAAGAATATGATGCTCATGGTCAAGGAGTAATCCATTTATGTGCTATTCTAGAATATACATGGGCTGTTCGCTTGTTTTCATGGTCTGGCTTGTCATTAGACTTTCGTGATAGACGTGGATGGACGGCCCTTCATTGGGCGGCATATTGTGGAAGGGAGAAAATGGTTGCAGTACTTTTATCTGCCGGGGCAAAGCCAAACTTGGTCACAGACCCCACGAAAGATAACCCTGGCGGATCCACTGCTGCTGATCTTGCATTCATGAAGGGCCATGATGGCTTAGCAGCTTATCTTTCAGAGAAGGCTTTGGTAGAACAATTCAAGGATATGCGCATGGCTGGAAATGCTAGTGGCTCTATTGACATTCGCTCAAACTATGCAGCAAACTCTGAGAACCTCAGTGAGGAAGAGCTATATCTGAAGGATACTTTGGCAGCTTATCGGACAGCTGCTGATGCAGCAGCACGAATACAGGCTGCCTTCAGGGAGAACTCACTTAAACAAAAGACTAAAGCGATTCAGTATTCCATTCCAGAGGCTGAAGCACATGGTATTATTGCAGCACTGAAAATTCAACATGCCTTTAGAAACTATGAGGCAAAAAAGAAGATCAAAGCTGCTGCTCACATTCAATATAGGTTTCGTACTTGGAAGATGCGTCAAGAATTTCTTAGTTTGCGTCGTCAAGCTATCAAAATTCAAGCTGCTTTTCGGGGCTTCCAAGTGCGGAGGCAGTACCGTAAAGTTCTCTGGTCAGTTGGAGTGCTTGAGAAAGCTGTTTTGAGATGGCGCTTCAAAAGAAGAGGGCTTCGTGGGCTTAAGGTGGCCCCAGCTGAAGTCAGTGCAGATCAGAATCAGGAAAGTGATACAGAAGAAGACTTCTACAGGGCCAGCCGGAAACAAGCTGAAGAGCGTATTGAAAGATCTGTTGTACGTGTTCAGGCCATGTTCCGCTCAAAGAAAGCACAACAAGAATATAGTAGGATGAAGATGGCCCACGATGAAGCAACGCTGGAATTTGATGATTTTCTTGATCCTGATGCAATCATGGATAATTGA

Protein Analysis

480

Amino Acids

54.86

Weight (kDa)

9.47

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 128 - 195 8.1e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 138 - 228 2.7e-08 Ankyrin repeats (3 copies)
Ank PF00023 167 - 197 1.4e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 713
AccBSI CCGCTC 1 cut(s) 1335
AciI CCGC 6 cut(s) 124, 293, 521, 615, 1108, 1333
AclWI GGATC 3 cut(s) 612, 625, 1409
AcoI YGGCCR 2 cut(s) 13, 248
AcsI RAATTY 5 cut(s) 107, 951, 1046, 1077, 1397
AcuI CTGAAG 6 cut(s) 69, 821, 847, 942, 1236, 1308
AfaI GTAC 6 cut(s) 36, 117, 555, 1027, 1118, 1314
AfiI CCNNNNNNNGG 3 cut(s) 516, 517, 784
AflII CTTAAG 1 cut(s) 1199
AflIII ACRYGT 1 cut(s) 1315
AgsI TTSAA 8 cut(s) 272, 317, 703, 956, 1013, 1082, 1177, 1301
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 3 cut(s) 612, 625, 1409
AlwNI CAGNNNCTG 2 cut(s) 833, 920
AoxI GGCC 8 cut(s) 13, 248, 507, 649, 1206, 1269, 1323, 1374
ApoI RAATTY 5 cut(s) 107, 951, 1046, 1077, 1397
AspLEI GCGC 2 cut(s) 714, 1173
AspS9I GGNCC 5 cut(s) 508, 649, 1207, 1269, 1375
AsuC2I CCSGG 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 186
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BalI TGGCCA 2 cut(s) 15, 250
BamHI GGATCC 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 1263
Bbv12I GWGCWC 1 cut(s) 58
BccI CCATC 6 cut(s) 5, 32, 495, 650, 1161, 1366
BceAI ACGGC 1 cut(s) 522
BcgI CGANNNNNNTGC 4 cut(s) 35, 69, 178, 212
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 799
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 3 cut(s) 174, 431, 729
BfmI CTRYAG 1 cut(s) 1264
BfoI RGCGCY 1 cut(s) 1174
BfrI CTTAAG 1 cut(s) 1199
BfuI GTATCC 1 cut(s) 799
BglI GCCNNNNNGGC 1 cut(s) 657
BglII AGATCT 1 cut(s) 1304
BlpI GCTNAGC 1 cut(s) 661
BmcAI AGTACT 2 cut(s) 36, 555
Bme1390I CCNGG 2 cut(s) 568, 612
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 5 cut(s) 508, 649, 1207, 1269, 1375
BmiI GGNNCC 2 cut(s) 619, 1209
BmrFI CCNGG 2 cut(s) 568, 612
BmsI GCATC 5 cut(s) 111, 382, 826, 1026, 1411
BpiI GAAGAC 1 cut(s) 1263
Bpu1102I GCTNAGC 1 cut(s) 661
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 1 cut(s) 568
BsaAI YACGTR 1 cut(s) 1316
BsaBI GATNNNNATC 1 cut(s) 1233
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 567, 610
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 517, 784
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 567, 610
BseGI GGATG 2 cut(s) 506, 1371
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 3 cut(s) 516, 517, 784
BseMII CTCAG 2 cut(s) 762, 793
BseRI GAGGAG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 1210
BsgI GTGCAG 1 cut(s) 1245
BshFI GGCC 8 cut(s) 15, 250, 509, 651, 1208, 1271, 1325, 1376
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 567, 1276
BslI CCNNNNNNNGG 3 cut(s) 516, 517, 784
BsmAI GTCTC 1 cut(s) 376
BsmI GAATGC 2 cut(s) 196, 638
BsnI GGCC 8 cut(s) 15, 250, 509, 651, 1208, 1271, 1325, 1376
Bso31I GGTCTC 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 58, 186
Bsp143I GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
Bsp1720I GCTNAGC 1 cut(s) 661
BspACI CCGC 6 cut(s) 124, 293, 521, 615, 1108, 1333
BspANI GGCC 8 cut(s) 15, 250, 509, 651, 1208, 1271, 1325, 1376
BspCNI CTCAG 2 cut(s) 763, 792
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 619, 1209
BspPI GGATC 3 cut(s) 612, 625, 1409
BspQI GCTCTTC 2 cut(s) 783, 1284
BspT104I TTCGAA 1 cut(s) 45
BspTI CTTAAG 1 cut(s) 1199
BspTNI GGTCTC 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 1335
BssECI CCNNGG 2 cut(s) 567, 610
BssMI GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 2 cut(s) 76, 1121
Bst6I CTCTTC 4 cut(s) 267, 783, 1177, 1284
BstAFI CTTAAG 1 cut(s) 1199
BstBAI YACGTR 1 cut(s) 1316
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 4 cut(s) 129, 248, 297, 1273
BstDEI CTNAG 5 cut(s) 153, 661, 771, 779, 1052
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 2 cut(s) 506, 1371
BstH2I RGCGCY 1 cut(s) 1174
BstHHI GCGC 2 cut(s) 714, 1173
BstKTI GATC 6 cut(s) 620, 634, 993, 1231, 1307, 1417
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
BstMWI GCNNNNNNNGC 6 cut(s) 635, 657, 725, 836, 839, 1195
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 962
BstSCI CCNGG 2 cut(s) 566, 610
BstSFI CTRYAG 1 cut(s) 1264
BstSLI GKGCMC 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 1263
BstX2I RGATCY 2 cut(s) 617, 1304
BstYI RGATCY 2 cut(s) 617, 1304
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 8 cut(s) 15, 250, 509, 651, 1208, 1271, 1325, 1376
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 2 cut(s) 506, 1371
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 4 cut(s) 621, 787, 944, 1228
Cac8I GCNNGC 4 cut(s) 129, 248, 297, 1273
CaiI CAGNNNCTG 2 cut(s) 833, 920
CciI TCATGA 1 cut(s) 642
CfoI GCGC 2 cut(s) 714, 1173
Cfr13I GGNCC 5 cut(s) 508, 649, 1207, 1269, 1375
CseI GACGC 2 cut(s) 1028, 1049
Csp6I GTAC 6 cut(s) 35, 116, 554, 1026, 1117, 1313
CviQI GTAC 6 cut(s) 35, 116, 554, 1026, 1117, 1313
DdeI CTNAG 5 cut(s) 153, 661, 771, 779, 1052
DpnI GATC 6 cut(s) 619, 633, 992, 1230, 1306, 1416
DpnII GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
EaeI YGGCCR 2 cut(s) 13, 248
Eam1104I CTCTTC 4 cut(s) 267, 783, 1177, 1284
EarI CTCTTC 4 cut(s) 267, 783, 1177, 1284
EciI GGCGGA 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 376
Eco57I CTGAAG 6 cut(s) 69, 821, 847, 942, 1236, 1308
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 610
FalI AAGNNNNNCTT 4 cut(s) 566, 598, 1035, 1067
FokI GGATG 2 cut(s) 513, 1378
FspAI RTGCGCAY 1 cut(s) 713
FspBI CTAG 3 cut(s) 174, 431, 729
FspI TGCGCA 1 cut(s) 713
GlaI GCGC 2 cut(s) 713, 1172
GsaI CCCAGC 1 cut(s) 1214
HaeII RGCGCY 1 cut(s) 1174
HaeIII GGCC 8 cut(s) 15, 250, 509, 651, 1208, 1271, 1325, 1376
HapII CCGG 2 cut(s) 567, 1276
HgaI GACGC 2 cut(s) 1028, 1049
HhaI GCGC 2 cut(s) 714, 1173
Hin6I GCGC 2 cut(s) 712, 1171
HinP1I GCGC 2 cut(s) 712, 1171
HinfI GANTC 2 cut(s) 898, 1234
HpaII CCGG 2 cut(s) 567, 1276
Hpy188I TCNGA 6 cut(s) 88, 679, 772, 801, 825, 1233
Hpy188III TCNNGA 8 cut(s) 431, 488, 643, 914, 1043, 1238, 1412, 1418
Hpy99I CGWCG 1 cut(s) 1065
HpyAV CCTTC 7 cut(s) 256, 521, 528, 640, 676, 796, 871
HpyCH4III ACNGT 2 cut(s) 76, 1121
HpyCH4IV ACGT 2 cut(s) 496, 1315
HpyCH4V TGCA 8 cut(s) 199, 551, 638, 761, 839, 941, 1226, 1424
HpyF10VI GCNNNNNNNGC 6 cut(s) 635, 657, 725, 836, 839, 1195
HpyF3I CTNAG 5 cut(s) 153, 661, 771, 779, 1052
HpySE526I ACGT 2 cut(s) 496, 1315
HspAI GCGC 2 cut(s) 712, 1171
Kzo9I GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
LguI GCTCTTC 2 cut(s) 783, 1284
LmnI GCTCC 1 cut(s) 61
LweI GCATC 5 cut(s) 111, 382, 826, 1026, 1411
MaeI CTAG 3 cut(s) 174, 431, 729
MaeII ACGT 2 cut(s) 496, 1315
MaeIII GTNAC 1 cut(s) 586
MalI GATC 6 cut(s) 619, 633, 992, 1230, 1306, 1416
MbiI CCGCTC 1 cut(s) 1335
MboI GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
MflI RGATCY 2 cut(s) 617, 1304
MhlI GDGCHC 2 cut(s) 58, 186
MlsI TGGCCA 2 cut(s) 15, 250
MluCI AATT 8 cut(s) 107, 321, 698, 951, 1046, 1077, 1397, 1435
MluNI TGGCCA 2 cut(s) 15, 250
MmeI TCCRAC 2 cut(s) 333, 1120
Mox20I TGGCCA 2 cut(s) 15, 250
MscI TGGCCA 2 cut(s) 15, 250
MseI TTAA 3 cut(s) 162, 879, 1200
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 15, 250
MspA1I CMGCKG 3 cut(s) 295, 830, 1214
MspCI CTTAAG 1 cut(s) 1199
MspI CCGG 2 cut(s) 567, 1276
MspR9I CCNGG 2 cut(s) 568, 612
Mva1269I GAATGC 2 cut(s) 196, 638
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 6 cut(s) 635, 657, 725, 836, 839, 1195
NciI CCSGG 1 cut(s) 568
NdeII GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
NlaIV GGNNCC 2 cut(s) 619, 1209
NmuCI GTSAC 1 cut(s) 586
NsbI TGCGCA 1 cut(s) 713
NspI RCATGY 1 cut(s) 962
NspV TTCGAA 1 cut(s) 45
PagI TCATGA 1 cut(s) 642
PciSI GCTCTTC 2 cut(s) 783, 1284
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PctI GAATGC 2 cut(s) 196, 638
PfeI GAWTC 2 cut(s) 898, 1234
Ppu21I YACGTR 1 cut(s) 1316
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 2 cut(s) 619, 1209
PspPI GGNCC 5 cut(s) 508, 649, 1207, 1269, 1375
PstNI CAGNNNCTG 2 cut(s) 833, 920
PsuI RGATCY 2 cut(s) 617, 1304
PvuII CAGCTG 2 cut(s) 830, 1214
RsaI GTAC 6 cut(s) 36, 117, 555, 1027, 1118, 1314
RsaNI GTAC 6 cut(s) 35, 116, 554, 1026, 1117, 1313
RseI CAYNNNNRTG 1 cut(s) 420
SapI GCTCTTC 2 cut(s) 783, 1284
SaqAI TTAA 3 cut(s) 162, 879, 1200
Sau3AI GATC 6 cut(s) 617, 631, 990, 1228, 1304, 1414
Sau96I GGNCC 5 cut(s) 508, 649, 1207, 1269, 1375
ScaI AGTACT 2 cut(s) 36, 555
ScrFI CCNGG 2 cut(s) 568, 612
SduI GDGCHC 2 cut(s) 58, 186
SfaNI GCATC 5 cut(s) 111, 382, 826, 1026, 1411
SfcI CTRYAG 1 cut(s) 1264
SfuI TTCGAA 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 1148, 1199
SmoI CTYRAG 2 cut(s) 1148, 1199
Sse9I AATT 8 cut(s) 107, 321, 698, 951, 1046, 1077, 1397, 1435
SsiI CCGC 6 cut(s) 124, 293, 521, 615, 1108, 1333
SspMI CTAG 3 cut(s) 174, 431, 729
StyD4I CCNGG 2 cut(s) 566, 610
TaaI ACNGT 2 cut(s) 76, 1121
TaiI ACGT 2 cut(s) 499, 1318
TaqI TCGA 1 cut(s) 45
TasI AATT 8 cut(s) 107, 321, 698, 951, 1046, 1077, 1397, 1435
TatI WGTACW 3 cut(s) 34, 115, 553
TauI GCSGC 2 cut(s) 127, 524
TfiI GAWTC 2 cut(s) 898, 1234
Tru1I TTAA 3 cut(s) 162, 879, 1200
Tru9I TTAA 3 cut(s) 162, 879, 1200
TscAI CASTG 4 cut(s) 628, 787, 951, 1228
TseFI GTSAC 1 cut(s) 586
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 7 cut(s) 275, 450, 503, 631, 659, 1382, 1398
TspRI CASTG 4 cut(s) 628, 787, 951, 1228
Vha464I CTTAAG 1 cut(s) 1199
XagI CCTNNNNNAGG 1 cut(s) 782
XapI RAATTY 5 cut(s) 107, 951, 1046, 1077, 1397
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 1 cut(s) 962
XspI CTAG 3 cut(s) 174, 431, 729
ZrmI AGTACT 2 cut(s) 36, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.