pycom16g13370

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011003
Physical Location & Seq
Reverse (-)
9526206 .. 9527015
810 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGCGAGAGCACAAGTACTGAACGCGTACAAAGCTTTGCTACGAGCGACGCGGAAGTCGTTCGCCGGAGACGTGACGATGCTGAACGGCGCGGCGGCGGAGGTCCGCAAGAAGTTCGAAGAGAGCAGGCACGTGACCTCAGACGCGGAGATCCAGAGTCTCCTGGAACAGGCAGGCGAGGCCTGCCGTTTCATCAGCGAAATGATCGTCCAGGCCAAGCTCAATTCCCGCGGCGGTTACGAAGTGAAGCCGGATAAAGATCATGCGGGAGCAACACTTGAGGTTCCTTCCGAAGAGCTTCTTCGCACCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

106

Amino Acids

11.54

Weight (kDa)

7.88

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 4 - 61 6e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62810 AT3G62810
fragaria_vesca FvH4_2g25692 FvH4_3g17380
malus_domestica MD03G1287900.v1.1 MD11G1310400.v1.1
prunus_persica Prupe.8G261100_v2.0.a1
pyrus_communis pycom16g13370
rosa_chinensis RchiOBHm_Chr6g0293971
rosa_laevigata RLG00000011911
rosa_multiflora Rmu_sc0005126.1_g000008 Rmu_sc0005647.1_g000004
rosa_roxburghii Rroxscaffold_7G00173780
rosa_rugosa Rorug05G0037400 Rorug06G0239600
rosa_samantha Rh6AG352700 Rh6BG359700 Rh6CG367000 Rh6DG353400
rosa_wichuraiana Rw6G030730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
AccII CGCG 5 cut(s) 26, 52, 92, 146, 231
AclWI GGATC 1 cut(s) 145
AcvI CACGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 18, 29
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 24
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 162, 210
AluBI AGCT 3 cut(s) 35, 220, 298
AluI AGCT 3 cut(s) 35, 220, 298
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 63, 164
AlwI GGATC 1 cut(s) 145
AoxI GGCC 2 cut(s) 180, 213
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp700I GAANNNNTTC 2 cut(s) 59, 297
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 103
BbrPI CACGTG 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 13
BceAI ACGGC 2 cut(s) 103, 171
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 2 cut(s) 164, 212
BcoDI GTCTC 2 cut(s) 63, 164
BisI GCNGC 3 cut(s) 93, 96, 232
BlsI GCNGC 3 cut(s) 94, 97, 233
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 164, 212
Bme18I GGWCC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 164, 212
BmsI GCATC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 164, 212
BseDI CCNNGG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 153
Bsh1236I CGCG 5 cut(s) 26, 52, 92, 146, 231
BshFI GGCC 2 cut(s) 182, 215
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 66, 251
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 63, 164
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 2 cut(s) 182, 215
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 150, 204, 259
BspANI GGCC 2 cut(s) 182, 215
BspCNI CTCAG 1 cut(s) 152
BspFNI CGCG 5 cut(s) 26, 52, 92, 146, 231
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 1 cut(s) 145
BspQI GCTCTTC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 150, 204, 259
Bst2UI CCWGG 2 cut(s) 164, 212
Bst6I CTCTTC 2 cut(s) 114, 288
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 128, 175, 184
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 167
BstFNI CGCG 5 cut(s) 26, 52, 92, 146, 231
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 153, 207, 262
BstMAI GTCTC 2 cut(s) 63, 164
BstMBI GATC 3 cut(s) 150, 204, 259
BstMWI GCNNNNNNNGC 3 cut(s) 32, 179, 183
BstNI CCWGG 2 cut(s) 164, 212
BstSCI CCNGG 2 cut(s) 162, 210
BstUI CGCG 5 cut(s) 26, 52, 92, 146, 231
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 182, 215
BtgI CCRYGG 1 cut(s) 229
BtrI CACGTC 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 128, 175, 184
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 103
Cfr42I CCGCGG 1 cut(s) 232
CseI GACGC 2 cut(s) 58, 152
Csp6I GTAC 2 cut(s) 17, 28
CviAII CATG 1 cut(s) 263
CviJI RGCY 6 cut(s) 35, 182, 215, 220, 250, 298
CviKI_1 RGCY 6 cut(s) 35, 182, 215, 220, 250, 298
CviQI GTAC 2 cut(s) 17, 28
DdeI CTNAG 1 cut(s) 139
DpnI GATC 3 cut(s) 152, 206, 261
DpnII GATC 3 cut(s) 150, 204, 259
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 114, 288
EarI CTCTTC 2 cut(s) 114, 288
EciI GGCGGA 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 103
Eco72I CACGTG 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 162, 210
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 1 cut(s) 266
FaiI YATR 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 262
FauI CCCGC 2 cut(s) 236, 259
Fnu4HI GCNGC 3 cut(s) 93, 96, 232
Fsp4HI GCNGC 3 cut(s) 93, 96, 232
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 93, 96, 232
HaeIII GGCC 2 cut(s) 182, 215
HapII CCGG 2 cut(s) 66, 251
HgaI GACGC 2 cut(s) 58, 152
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 1 cut(s) 157
HpaII CCGG 2 cut(s) 66, 251
Hpy188I TCNGA 2 cut(s) 142, 292
Hpy188III TCNNGA 2 cut(s) 154, 315
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 297
HpyCH4IV ACGT 2 cut(s) 72, 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 179, 183
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 2 cut(s) 72, 132
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 90
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 3 cut(s) 150, 204, 259
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 269
LweI GCATC 1 cut(s) 69
MaeII ACGT 2 cut(s) 72, 132
MaeIII GTNAC 3 cut(s) 73, 133, 236
MalI GATC 3 cut(s) 152, 206, 261
MboI GATC 3 cut(s) 150, 204, 259
MboII GAAGA 3 cut(s) 131, 293, 305
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 223
MluI ACGCGT 1 cut(s) 24
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 4 cut(s) 94, 148, 172, 274
MroXI GAANNNNTTC 2 cut(s) 59, 297
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 2 cut(s) 66, 251
MspR9I CCNGG 2 cut(s) 164, 212
MvaI CCWGG 2 cut(s) 164, 212
MvnI CGCG 5 cut(s) 26, 52, 92, 146, 231
MwoI GCNNNNNNNGC 3 cut(s) 32, 179, 183
NdeII GATC 3 cut(s) 150, 204, 259
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 73, 133
NspV TTCGAA 1 cut(s) 117
PceI AGGCCT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 69
PdmI GAANNNNTTC 2 cut(s) 59, 297
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 3 cut(s) 94, 97, 233
PleI GAGTC 1 cut(s) 165
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 1 cut(s) 165
Ppu21I YACGTR 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 162, 210
PspCI CACGTG 1 cut(s) 133
PspGI CCWGG 2 cut(s) 162, 210
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 103
PsuI RGATCY 1 cut(s) 150
RsaI GTAC 2 cut(s) 18, 29
RsaNI GTAC 2 cut(s) 17, 28
SacII CCGCGG 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 288
SatI GCNGC 3 cut(s) 93, 96, 232
Sau3AI GATC 3 cut(s) 150, 204, 259
Sau96I GGNCC 1 cut(s) 103
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 164, 212
SduI GDGCHC 1 cut(s) 13
SetI ASST 8 cut(s) 37, 75, 105, 135, 140, 222, 285, 300
SfaNI GCATC 1 cut(s) 69
Sfr303I CCGCGG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 117
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 1 cut(s) 223
SseBI AGGCCT 1 cut(s) 182
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 162, 210
TaiI ACGT 2 cut(s) 75, 135
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 223
TatI WGTACW 1 cut(s) 16
TauI GCSGC 3 cut(s) 95, 98, 234
TseFI GTSAC 2 cut(s) 73, 133
Tsp45I GTSAC 2 cut(s) 73, 133
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 167
XmnI GAANNNNTTC 2 cut(s) 59, 297
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.