pycom16g14320

Flowering-promoting factor 1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013941
Physical Location & Seq
Reverse (-)
10350008 .. 10350499
492 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGATCCTTACTGTATCTTACAAAGATTCCCTCACAATCAAGTGGAACCCACCTTACCCTACTATACCCACATCCAAACATGCCCGTAATTTCATCTCTCCAAAATTTAACCTCACGACACTTCATTTTACCTATAAATACACATACTCTACGTCCCAAACTCATACAAACAACACATTCTCACTCCTTAGTTGTTTAACCTTCTCATCACCAAACATGTCTGGGGTTTGGGTTTTCAAGAATGGCGTCGTCCGGTTGGTGGACGGGGCGGATTCCTTGCAAGGCTCCAACGCCCGGCCGCGTAAGGTCCTCGTCCACACTCCAACTGACGAGGTCATCAGCTCTTACGCCGTGCTCGAACGCAAGCTGTCCACGCTCGGCTGGGAGCGATACTATGACGATCGACCTTCTTCAGTTCCACAAACGATCCACCGTCCATCTCATCTCTCTCCCCAAGGATTTCAACAAGTTCAAGTCCATGCACATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.51

Weight (kDa)

9.68

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013941)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31380
fragaria_vesca FvH4_4g17910
malus_domestica MD13G1169600.v1.1 MD16G1169700.v1.1
prunus_persica Prupe.1G137800_v2.0.a1
pyrus_communis pycom13g14510 pycom16g14320
rosa_chinensis RchiOBHm_Chr4g0422041
rosa_laevigata RLG00000007638
rosa_multiflora Rmu_sc0012856.1_g000018
rosa_roxburghii Rroxscaffold_5G00364160
rosa_rugosa Rorug04G0176900.1
rosa_samantha Rh4AG236500 Rh4BG239300 Rh4CG251300 Rh4DG235500
rosa_wichuraiana Rw4G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 301
AciI CCGC 2 cut(s) 269, 299
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 259, 294
AflIII ACRYGT 2 cut(s) 216, 484
AgsI TTSAA 3 cut(s) 238, 464, 473
AluBI AGCT 2 cut(s) 342, 367
AluI AGCT 2 cut(s) 342, 367
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 421
AoxI GGCC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 295
AsuHPI GGTGA 1 cut(s) 201
AvaII GGWCC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 335
BcnI CCSGG 1 cut(s) 295
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
Bme1390I CCNGG 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 47, 286
BmrFI CCNGG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 295
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 454
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 294
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 2 cut(s) 259, 294
BseX3I CGGCCG 1 cut(s) 296
BseYI CCCAGC 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 301
Bsh1285I CGRYCG 2 cut(s) 299, 403
BshFI GGCC 1 cut(s) 298
BsiEI CGRYCG 2 cut(s) 299, 403
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 253, 295
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 259, 294
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 3, 400, 426
BspACI CCGC 2 cut(s) 269, 299
BspANI GGCC 1 cut(s) 298
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 47, 286
BspPI GGATC 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 454
BssMI GATC 3 cut(s) 3, 400, 426
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 454
Bst4CI ACNGT 2 cut(s) 13, 434
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 1 cut(s) 301
BstKTI GATC 3 cut(s) 6, 403, 429
BstMBI GATC 3 cut(s) 3, 400, 426
BstMCI CGRYCG 2 cut(s) 299, 403
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNSI RCATGY 3 cut(s) 83, 220, 488
BstSCI CCNGG 1 cut(s) 293
BstUI CGCG 1 cut(s) 301
BstZI CGGCCG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 1 cut(s) 235
CviAII CATG 4 cut(s) 80, 217, 479, 485
CviJI RGCY 5 cut(s) 285, 298, 342, 367, 381
CviKI_1 RGCY 5 cut(s) 285, 298, 342, 367, 381
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 5, 402, 428
DpnII GATC 3 cut(s) 3, 400, 426
EaeI YGGCCR 1 cut(s) 296
EagI CGGCCG 1 cut(s) 296
EciI GGCGGA 1 cut(s) 284
EclXI CGGCCG 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 307
Eco52I CGGCCG 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 4 cut(s) 83, 220, 482, 488
FaqI GGGAC 1 cut(s) 139
FatI CATG 4 cut(s) 79, 216, 478, 484
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 299
GsaI CCCAGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 298
HapII CCGG 2 cut(s) 253, 295
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 4 cut(s) 83, 220, 482, 488
HinfI GANTC 2 cut(s) 26, 272
HpaII CCGG 2 cut(s) 253, 295
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 3 cut(s) 262, 316, 372
Hpy188III TCNNGA 2 cut(s) 115, 238
Hpy8I GTNNAC 3 cut(s) 262, 316, 372
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 211, 417
HpyCH4III ACNGT 2 cut(s) 13, 434
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 280, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 4 cut(s) 83, 220, 482, 488
Kzo9I GATC 3 cut(s) 3, 400, 426
LmnI GCTCC 2 cut(s) 290, 385
LpnPI CCDG 4 cut(s) 207, 266, 308, 367
MaeII ACGT 1 cut(s) 152
MalI GATC 3 cut(s) 5, 402, 428
MboI GATC 3 cut(s) 3, 400, 426
MboII GAAGA 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 88, 104
MmeI TCCRAC 2 cut(s) 312, 347
MnlI CCTC 4 cut(s) 41, 122, 320, 325
MseI TTAA 2 cut(s) 108, 197
MslI CAYNNNNRTG 2 cut(s) 483, 487
MspI CCGG 2 cut(s) 253, 295
MspR9I CCNGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 373
NciI CCSGG 1 cut(s) 295
NdeII GATC 3 cut(s) 3, 400, 426
NlaIII CATG 4 cut(s) 83, 220, 482, 488
NlaIV GGNNCC 2 cut(s) 47, 286
NmeAIII GCCGAG 1 cut(s) 357
NspI RCATGY 3 cut(s) 83, 220, 488
PciI ACATGT 2 cut(s) 216, 484
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PfeI GAWTC 2 cut(s) 26, 272
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 300
Ple19I CGATCG 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 307
PscI ACATGT 2 cut(s) 216, 484
Psp5II RGGWCCY 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 47, 286
PspPI GGNCC 1 cut(s) 307
PspPPI RGGWCCY 1 cut(s) 307
PsrI GAACNNNNNNTAC 2 cut(s) 38, 70
PsyI GACNNNGTC 1 cut(s) 332
PvuI CGATCG 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 483, 487
SaqAI TTAA 2 cut(s) 108, 197
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 3 cut(s) 3, 400, 426
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 357
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 483, 487
Sse9I AATT 2 cut(s) 88, 104
SsiI CCGC 2 cut(s) 269, 299
StyD4I CCNGG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 2 cut(s) 13, 434
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 357, 403
TasI AATT 2 cut(s) 88, 104
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 2 cut(s) 26, 272
Tru1I TTAA 2 cut(s) 108, 197
Tru9I TTAA 2 cut(s) 108, 197
TspDTI ATGAA 2 cut(s) 82, 113
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 104
XceI RCATGY 3 cut(s) 83, 220, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.