Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005752

Physical Location & Seq

Genomic Coordinates Forward (+)

10856141 .. 10856605

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCCCGTCAGCTGCGGGAGATTTAGGGTTAGAAGGGGTCCACTCCAGGACTATGATTCTACTCTCTCCTTTTCACACCGGTTAAATGCAGTTTCTATTGGTAAGAATGATTTTGAAATATATCCACACAGAGGTGAGGTTTGGGCTTTATATAAGAACTGGACAGCTGGTCTCTCGTGTTCCGACTTGGATACCTGCGAGTATGACATAGTGGTAGTGCAGACTGAAAATGATTTGCAGAGAGAGGTCTTGATTTTAGAGCGTGTGGATGGTTTCAACTCGGTTTTCAAGACTCGGGTGAAAGGAGGATCAGCTGAAACCATGACCGTCCGTGGGGTTGAACTACTGAGGTTTTCTCACATGATTCCTTCTTTCCGGCTAACAGACGAAAAAGGCGGCAGCCTCAGAGGATGCTGGGAACTTGACCCTGCTGCTTTGCCGCTTCGTTTCTTCAATCAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006458 GO:0006508 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019538 GO:0022607 GO:0030163 GO:0030176 GO:0030544 GO:0031072 GO:0031224 GO:0031227 GO:0031984 GO:0033554 GO:0034622 GO:0034976 GO:0035966 GO:0035967 GO:0036503 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051084 GO:0051085 GO:0051603 GO:0051716 GO:0051788 GO:0061077 GO:0065003 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071840 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

155

Amino Acids

17.55

Weight (kDa)

6.3

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	1 - 130	3.3e-35	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06340 AT3G06340 AT3G06340 AT3G06340 AT5G18750
fragaria_vesca	FvH4_2g06370
malus_domestica	MD13G1174800.v1.1 MD16G1176500.v1.1
prunus_persica	Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1
pyrus_communis	pycom13g15060 pycom13g15070 pycom16g14800 pycom16g14810
rosa_chinensis	RchiOBHm_Chr4g0420721
rosa_laevigata	RLG00000007740 RLG00000030269 RLG00000030290
rosa_multiflora	Rmu_co8498373.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363230
rosa_rugosa	Rorug04G0165700
rosa_samantha	Rh4AG227200 Rh4BG230000 Rh4CG242100 Rh4DG225500
rosa_wichuraiana	Rw4G019660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AciI	CCGC	3 cut(s)	15, 396, 440
AclWI	GGATC	1 cut(s)	316
AfiI	CCNNNNNNNGG	2 cut(s)	131, 333
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	116, 277, 289, 341, 454
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	45
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	12, 167, 314
AluI	AGCT	3 cut(s)	12, 167, 314
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	12, 399, 431
AsiGI	ACCGGT	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	146, 310
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	411, 418
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	5 cut(s)	13, 397, 400, 432, 440
BlsI	GCNGC	5 cut(s)	14, 398, 401, 433, 441
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	38
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	401
BplI	GAGNNNNNCTC	2 cut(s)	340, 372
BpmI	CTGGAG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 333
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	274, 416
BseLI	CCNNNNNNNGG	2 cut(s)	131, 333
BseMII	CTCAG	2 cut(s)	338, 418
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	411, 418
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	239
BshTI	ACCGGT	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	79, 376
BslI	CCNNNNNNNGG	2 cut(s)	131, 333
BsmAI	GTCTC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	3 cut(s)	15, 396, 440
BspCNI	CTCAG	2 cut(s)	339, 417
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	308
BssSI	CACGAG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	347, 404
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	274, 416
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	411, 418
BsuI	GTATCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	274, 416
BveI	ACCTGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	38
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	2 cut(s)	322, 361
CviJI	RGCY	6 cut(s)	12, 146, 167, 314, 379, 402
CviKI_1	RGCY	6 cut(s)	12, 146, 167, 314, 379, 402
DdeI	CTNAG	2 cut(s)	347, 404
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
DriI	GACNNNNNGTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	325, 364
FaiI	YATR	8 cut(s)	54, 121, 151, 153, 204, 209, 323, 362
FatI	CATG	2 cut(s)	321, 360
FauI	CCCGC	1 cut(s)	8
Fnu4HI	GCNGC	5 cut(s)	13, 397, 400, 432, 440
FokI	GGATG	2 cut(s)	281, 423
Fsp4HI	GCNGC	5 cut(s)	13, 397, 400, 432, 440
GluI	GCNGC	5 cut(s)	13, 397, 400, 432, 440
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	2 cut(s)	79, 376
Hin1II	CATG	2 cut(s)	325, 364
HinfI	GANTC	3 cut(s)	56, 292, 364
HpaII	CCGG	2 cut(s)	79, 376
HphI	GGTGA	2 cut(s)	146, 310
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	184, 407, 459
Hpy188III	TCNNGA	2 cut(s)	250, 289
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	27, 378
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	89, 220, 238
HpyF3I	CTNAG	2 cut(s)	347, 404
Hsp92II	CATG	2 cut(s)	325, 364
Kzo9I	GATC	1 cut(s)	308
LpnPI	CCDG	9 cut(s)	32, 59, 92, 145, 153, 208, 389, 400, 441
Lsp1109I	GCAGC	2 cut(s)	411, 418
LweI	GCATC	1 cut(s)	401
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	7 cut(s)	125, 130, 238, 299, 342, 401, 413
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	3 cut(s)	12, 167, 314
MspI	CCGG	2 cut(s)	79, 376
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	325, 364
NlaIV	GGNNCC	1 cut(s)	39
OliI	CACNNNNGTG	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	56, 364
PfoI	TCCNGGA	1 cut(s)	45
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	5 cut(s)	14, 398, 401, 433, 441
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	38
PvuII	CAGCTG	3 cut(s)	12, 167, 314
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	5 cut(s)	13, 397, 400, 432, 440
Sau3AI	GATC	1 cut(s)	308
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	8 cut(s)	14, 136, 141, 169, 197, 249, 316, 353
SfaNI	GCATC	1 cut(s)	401
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	132
SsiI	CCGC	3 cut(s)	15, 396, 440
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	328
TauI	GCSGC	2 cut(s)	399, 442
TfiI	GAWTC	2 cut(s)	56, 364
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseI	GCWGC	3 cut(s)	12, 399, 431
TspGWI	ACGGA	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.