pycom16g15180

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012389
Physical Location & Seq
Reverse (-)
11167131 .. 11168578
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGGGATTCATCCGCAAGGTGTACGGAATCTTGGCCGCCCAGATGGTTTTGACCACTATGATCTCCTTCGTCACCGTCCTCTACGCTCCGATCAACAGGTTGATCTCCTCAAGGGCAGCCCTGGAATTCTCCTCTTCTTCGCCATCCTTCCCCTAATCTTGTTGTGGCCCCTGCATGTGTATCAGCAGAAGCATCCCCTCAATTTTGTCTTCCTTGGACTTTTCACTCTGAGTTTGAGTGTCACAGTTGGCGTGGCCGTCGCGAATACGGACGGAGCAATTGTGCTTGAAGCTTTGATTCTAACCTCAGCTGTGGTTGCATCCTTGACTGCTTACACCTTCTGGGCGTCTAGGAAGGGCAAGGACTTCAGCTTCCTCGGACCAGTGTTGTTCACTGGCCTCATTGTCCTCCTCCTAACTGGTTTCATGCAGATGTTCTTCCCTCTTGGCCCTACAACTAATGCCATATATGGTGCCATTGGCGCTGTCATTTTCTCTGGGTACATCGTCTATGACACTGACAACCTGATCAAGCGCTTCACGTATGATGAGTACATTTGGGCCTCCATCACTCTTTATCTTGACATTCTGAACCTCTTCCTGACCATATTGCGGATGCTGAGGCAAAGCAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bax1-I

Protein Analysis

213

Amino Acids

23.71

Weight (kDa)

8.0

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 40 - 207 7.1e-43 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15470
fragaria_vesca FvH4_4g14100
malus_domestica MD13G1179700.v1.1 MD16G1180700.v1.1
prunus_persica Prupe.1G148200_v2.0.a1 Prupe.1G148200_v2.0.a1
pyrus_communis pycom13g15490 pycom16g15180
rosa_chinensis RchiOBHm_Chr4g0419241
rosa_laevigata RLG00000007822
rosa_multiflora Rmu_sc0004932.1_g000001 Rmu_sc0019148.1_g000001
rosa_roxburghii Rroxscaffold_5G00362220
rosa_rugosa Rorug04G0157600
rosa_samantha Rh4AG219600 Rh4BG221100 Rh4CG232200 Rh4DG218600
rosa_wichuraiana Rw4G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 473
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 14, 37, 613
AcoI YGGCCR 2 cut(s) 34, 255
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 3 cut(s) 24, 503, 554
AfeI AGCGCT 1 cut(s) 536
AfiI CCNNNNNNNGG 1 cut(s) 612
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 3 cut(s) 293, 311, 372
AluI AGCT 3 cut(s) 293, 311, 372
Aor51HI AGCGCT 1 cut(s) 536
AoxI GGCC 6 cut(s) 34, 167, 255, 397, 448, 561
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 2 cut(s) 485, 537
AspS9I GGNCC 4 cut(s) 168, 380, 449, 561
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 380
BanI GGYRCC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 202
BbvCI CCTCAGC 2 cut(s) 307, 620
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 38, 152, 575
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 123
BclI TGATCA 1 cut(s) 528
BfaI CTAG 1 cut(s) 351
BfoI RGCGCY 2 cut(s) 486, 538
BisI GCNGC 2 cut(s) 37, 118
BlsI GCNGC 2 cut(s) 38, 119
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 168, 380, 449, 561
BmiI GGNNCC 2 cut(s) 170, 475
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 3 cut(s) 202, 329, 606
BpiI GAAGAC 1 cut(s) 202
Bpu10I CCTNAGC 2 cut(s) 307, 620
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 121, 214, 376
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse1I ACTGG 3 cut(s) 383, 400, 424
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 121, 214, 376
BseGI GGATG 5 cut(s) 10, 144, 193, 320, 621
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 221, 321, 611
BseNI ACTGG 3 cut(s) 383, 400, 424
BseRI GAGGAG 3 cut(s) 98, 122, 401
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 6 cut(s) 36, 169, 257, 399, 450, 563
BshNI GGYRCC 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 612
BsnI GGCC 6 cut(s) 36, 169, 257, 399, 450, 563
Bsp143I GATC 4 cut(s) 61, 91, 103, 528
Bsp68I TCGCGA 1 cut(s) 263
BspACI CCGC 3 cut(s) 14, 37, 613
BspANI GGCC 6 cut(s) 36, 169, 257, 399, 450, 563
BspCNI CTCAG 3 cut(s) 222, 320, 612
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 170, 475
BspT107I GGYRCC 1 cut(s) 473
BsrI ACTGG 3 cut(s) 383, 400, 424
BssECI CCNNGG 3 cut(s) 121, 214, 376
BssMI GATC 4 cut(s) 61, 91, 103, 528
BssNI GRCGYC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 77, 247
Bst6I CTCTTC 2 cut(s) 140, 602
BstACI GRCGYC 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 543
BstDEI CTNAG 3 cut(s) 230, 307, 620
BstF5I GGATG 5 cut(s) 10, 144, 193, 320, 621
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 2 cut(s) 486, 538
BstHHI GCGC 2 cut(s) 485, 537
BstKTI GATC 4 cut(s) 64, 94, 106, 531
BstMBI GATC 4 cut(s) 61, 91, 103, 528
BstMWI GCNNNNNNNGC 2 cut(s) 317, 482
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 121
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 202
BsuRI GGCC 6 cut(s) 36, 169, 257, 399, 450, 563
BtsCI GGATG 5 cut(s) 10, 144, 193, 320, 621
BtsIMutI CAGTG 3 cut(s) 390, 393, 516
BtuMI TCGCGA 1 cut(s) 263
CfoI GCGC 2 cut(s) 485, 537
Cfr13I GGNCC 4 cut(s) 168, 380, 449, 561
CseI GACGC 1 cut(s) 336
Csp6I GTAC 3 cut(s) 23, 502, 553
CviAII CATG 2 cut(s) 176, 427
CviQI GTAC 3 cut(s) 23, 502, 553
DdeI CTNAG 3 cut(s) 230, 307, 620
DpnI GATC 4 cut(s) 63, 93, 105, 530
DpnII GATC 4 cut(s) 61, 91, 103, 528
EaeI YGGCCR 2 cut(s) 34, 255
Eam1104I CTCTTC 2 cut(s) 140, 602
EarI CTCTTC 2 cut(s) 140, 602
Eco130I CCWWGG 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 380
Eco47III AGCGCT 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 2 cut(s) 179, 430
FaiI YATR 9 cut(s) 60, 177, 428, 467, 469, 471, 513, 546, 608
FatI CATG 2 cut(s) 175, 426
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 37, 118
FokI GGATG 4 cut(s) 131, 180, 307, 628
Fsp4HI GCNGC 2 cut(s) 37, 118
FspBI CTAG 1 cut(s) 351
GlaI GCGC 2 cut(s) 484, 536
GluI GCNGC 2 cut(s) 37, 118
HaeII RGCGCY 2 cut(s) 486, 538
HaeIII GGCC 6 cut(s) 36, 169, 257, 399, 450, 563
HgaI GACGC 1 cut(s) 336
HhaI GCGC 2 cut(s) 485, 537
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 2 cut(s) 179, 430
Hin6I GCGC 2 cut(s) 483, 535
HinP1I GCGC 2 cut(s) 483, 535
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 7, 28, 298
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 23, 393
Hpy188I TCNGA 4 cut(s) 91, 231, 380, 591
Hpy188III TCNNGA 3 cut(s) 262, 581, 601
Hpy8I GTNNAC 2 cut(s) 23, 393
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 4 cut(s) 77, 158, 349, 349
HpyCH4III ACNGT 2 cut(s) 77, 247
HpyCH4IV ACGT 1 cut(s) 542
HpyCH4V TGCA 3 cut(s) 175, 320, 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 482
HpyF3I CTNAG 3 cut(s) 230, 307, 620
HpySE526I ACGT 1 cut(s) 542
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 2 cut(s) 179, 430
HspAI GCGC 2 cut(s) 483, 535
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 4 cut(s) 61, 91, 103, 528
LmnI GCTCC 2 cut(s) 92, 275
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 3 cut(s) 202, 329, 606
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 542
MaeIII GTNAC 2 cut(s) 71, 241
MalI GATC 4 cut(s) 63, 93, 105, 530
MboI GATC 4 cut(s) 61, 91, 103, 528
MboII GAAGA 5 cut(s) 127, 130, 202, 430, 589
MfeI CAATTG 1 cut(s) 279
MluCI AATT 4 cut(s) 126, 202, 279, 634
MroXI GAANNNNTTC 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 123
MunI CAATTG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 317, 482
NdeII GATC 4 cut(s) 61, 91, 103, 528
NlaIII CATG 2 cut(s) 179, 430
NlaIV GGNNCC 2 cut(s) 170, 475
NmuCI GTSAC 2 cut(s) 71, 241
NruI TCGCGA 1 cut(s) 263
NspI RCATGY 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 3 cut(s) 7, 28, 298
PkrI GCNGC 2 cut(s) 38, 119
Ppu21I YACGTR 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 170, 475
PspPI GGNCC 4 cut(s) 168, 380, 449, 561
PvuII CAGCTG 1 cut(s) 311
RruI TCGCGA 1 cut(s) 263
RsaI GTAC 3 cut(s) 24, 503, 554
RsaNI GTAC 3 cut(s) 23, 502, 553
RseI CAYNNNNRTG 1 cut(s) 431
SatI GCNGC 2 cut(s) 37, 118
Sau3AI GATC 4 cut(s) 61, 91, 103, 528
Sau96I GGNCC 4 cut(s) 168, 380, 449, 561
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 3 cut(s) 202, 329, 606
SinI GGWCC 1 cut(s) 380
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 4 cut(s) 126, 202, 279, 634
SsiI CCGC 3 cut(s) 14, 37, 613
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 77, 247
TaiI ACGT 1 cut(s) 545
TasI AATT 4 cut(s) 126, 202, 279, 634
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 3 cut(s) 7, 28, 298
TscAI CASTG 3 cut(s) 390, 400, 523
TseFI GTSAC 2 cut(s) 71, 241
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 71, 241
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 3 cut(s) 40, 284, 288
TspRI CASTG 3 cut(s) 390, 400, 523
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.