pycom16g15550

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012211
Physical Location & Seq
Forward (+)
11549017 .. 11551709
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGTTGGGAGTTTTCAGCAGCGCGATCGTGTCGCCGCCGGACGAGCTGGTAGCCGCCGGCAGCCGAACTCCGTCGCCGAAAATCACGGCGACGTCGCTGGTCAACCGCTTCGTCCAGACTAATGGGGCCGCCGTCTCCGTACAAGTCGGCGACGACGCTCAGCTGGCCTACAGTCACAGCAACGAGTCTCCGTTGCAACCGAGGTCATTTGCAGTGAAGGATGAGATATTCTGCTTGTTTGAGGGAGCACTTGACAACTTGGGAAGTTTGAGGCAGCAGTACGGACTTGCCAAGTCGGCAAATGAAGTGATTTTGGTGATCGAGGCTTACAAGGCCCTTCGTGATCGGGCTCCTTACCCGCCAAACCATGTCGTTGGCCACCTCAGTGGAAATTTTGCTTTCATAGTATTTGACAAGTCCACCTCAACTGTGTTCGTGGCGTCTGACCAATTTGGCAAGATTCCGCTCTCATGGGGAATTACTGCTGATGGATATGTGGCCTTTGGTGATGATGCAGAACTGCTCAAGGGTGCTTGTGGCAAGTCACTCGCTTCTTTCCCTCAAGGATGTTTCTACTCCACGTCTGTTGGAGGACTGAGAAGCTATGAGAATCCTAAAAACAAGATCACAGCTGTGCCTGCTACTGATGAAGAAATCTGGGGTGCAACATTTAAGGTGGAAGGGCCAGCAGTTCTTGCAGCCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

237

Amino Acids

25.0

Weight (kDa)

5.4

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 226 6.5e-95 Aluminium induced protein
GATase_6 PF13522 62 - 169 4.4e-10 Glutamine amidotransferase domain
GATase_7 PF13537 63 - 170 3.4e-10 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19140 AT5G19140 AT5G19140
fragaria_vesca FvH4_4g14740 FvH4_4g14740
malus_domestica MD13G1185100.v1.1 MD16G1185700.v1.1
prunus_persica Prupe.1G152400_v2.0.a1 Prupe.1G152400_v2.0.a1
pyrus_communis pycom13g15970 pycom16g15550
rosa_chinensis RchiOBHm_Chr4g0417861
rosa_laevigata RLG00000007892
rosa_multiflora Rmu_sc0004911.1_g000008
rosa_roxburghii Rroxscaffold_5G00361280
rosa_rugosa Rorug04G0149900
rosa_samantha Rh4BG218800 Rh4DG210100
rosa_wichuraiana Rw4G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 466
AccII CGCG 1 cut(s) 23
AciI CCGC 6 cut(s) 35, 54, 106, 129, 359, 464
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 391
AcyI GRCGYC 2 cut(s) 92, 440
AfaI GTAC 2 cut(s) 141, 281
AjiI CACGTC 1 cut(s) 582
AleI CACNNNNGTG 2 cut(s) 384, 632
AluBI AGCT 4 cut(s) 46, 163, 603, 632
AluI AGCT 4 cut(s) 46, 163, 603, 632
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 139, 192
AoxI GGCC 6 cut(s) 126, 165, 333, 376, 498, 683
ApeKI GCWGC 4 cut(s) 18, 60, 274, 698
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 3 cut(s) 126, 334, 683
AsuHPI GGTGA 2 cut(s) 328, 518
BalI TGGCCA 1 cut(s) 378
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 3 cut(s) 30, 72, 286
BccI CCATC 1 cut(s) 482
BceAI ACGGC 2 cut(s) 102, 116
BcgI CGANNNNNNTGC 4 cut(s) 7, 41, 529, 563
BcoDI GTCTC 2 cut(s) 139, 192
BfmI CTRYAG 1 cut(s) 169
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 7 cut(s) 19, 35, 54, 61, 129, 275, 699
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 7 cut(s) 20, 36, 55, 62, 130, 276, 700
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 3 cut(s) 126, 334, 683
BmiI GGNNCC 2 cut(s) 127, 351
BmsI GCATC 1 cut(s) 502
Bpu1102I GCTNAGC 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 509, 546
BsaHI GRCGYC 2 cut(s) 92, 440
BsaJI CCNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 226, 572
BseMII CTCAG 3 cut(s) 173, 397, 587
BseXI GCAGC 3 cut(s) 30, 72, 286
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 6 cut(s) 128, 167, 335, 378, 500, 685
BsiEI CGRYCG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 38, 57
BsmAI GTCTC 2 cut(s) 139, 192
BsmBI CGTCTC 1 cut(s) 139
BsnI GGCC 6 cut(s) 128, 167, 335, 378, 500, 685
Bsp1286I GDGCHC 2 cut(s) 250, 352
Bsp143I GATC 4 cut(s) 24, 318, 343, 624
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 6 cut(s) 35, 54, 106, 129, 359, 464
BspANI GGCC 6 cut(s) 128, 167, 335, 378, 500, 685
BspCNI CTCAG 3 cut(s) 172, 396, 588
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 127, 351
BsrBI CCGCTC 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 4 cut(s) 24, 318, 343, 624
BssNI GRCGYC 2 cut(s) 92, 440
Bst4CI ACNGT 2 cut(s) 173, 430
BstACI GRCGYC 2 cut(s) 92, 440
BstAPI GCANNNNNTGC 1 cut(s) 695
BstC8I GCNNGC 4 cut(s) 58, 165, 639, 687
BstDEI CTNAG 3 cut(s) 159, 383, 596
BstF5I GGATG 2 cut(s) 226, 572
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 4 cut(s) 27, 321, 346, 627
BstMAI GTCTC 2 cut(s) 139, 192
BstMBI GATC 4 cut(s) 24, 318, 343, 624
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 6 cut(s) 43, 164, 296, 332, 638, 695
BstSFI CTRYAG 1 cut(s) 169
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 30, 72, 286
BstXI CCANNNNNNTGG 3 cut(s) 122, 374, 386
BsuRI GGCC 6 cut(s) 128, 167, 335, 378, 500, 685
BtrI CACGTC 1 cut(s) 582
BtsCI GGATG 2 cut(s) 226, 572
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 391
Cac8I GCNNGC 4 cut(s) 58, 165, 639, 687
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 126, 334, 683
CseI GACGC 2 cut(s) 164, 429
Csp6I GTAC 2 cut(s) 140, 280
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 2 cut(s) 368, 471
CviQI GTAC 2 cut(s) 140, 280
DdeI CTNAG 3 cut(s) 159, 383, 596
DpnI GATC 4 cut(s) 26, 320, 345, 626
DpnII GATC 4 cut(s) 24, 318, 343, 624
EaeI YGGCCR 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 371, 474
FaiI YATR 5 cut(s) 369, 404, 472, 495, 606
FatI CATG 2 cut(s) 367, 470
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 7 cut(s) 19, 35, 54, 61, 129, 275, 699
FokI GGATG 2 cut(s) 233, 579
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 7 cut(s) 19, 35, 54, 61, 129, 275, 699
GlaI GCGC 1 cut(s) 22
GluI GCNGC 7 cut(s) 19, 35, 54, 61, 129, 275, 699
HaeIII GGCC 6 cut(s) 128, 167, 335, 378, 500, 685
HapII CCGG 2 cut(s) 38, 57
HgaI GACGC 2 cut(s) 164, 429
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 2 cut(s) 92, 440
Hin1II CATG 2 cut(s) 371, 474
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 3 cut(s) 185, 460, 610
HpaII CCGG 2 cut(s) 38, 57
HphI GGTGA 2 cut(s) 328, 518
Hpy166II GTNNAC 2 cut(s) 103, 420
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 2 cut(s) 115, 341
Hpy8I GTNNAC 2 cut(s) 103, 420
Hpy99I CGWCG 5 cut(s) 76, 94, 97, 155, 158
HpyAV CCTTC 3 cut(s) 211, 347, 674
HpyCH4III ACNGT 2 cut(s) 173, 430
HpyCH4IV ACGT 2 cut(s) 92, 581
HpyCH4V TGCA 5 cut(s) 196, 212, 515, 665, 698
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 164, 296, 332, 638, 695
HpyF3I CTNAG 3 cut(s) 159, 383, 596
HpySE526I ACGT 2 cut(s) 92, 581
Hsp92I GRCGYC 2 cut(s) 92, 440
Hsp92II CATG 2 cut(s) 371, 474
HspAI GCGC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 4 cut(s) 24, 318, 343, 624
LmnI GCTCC 2 cut(s) 245, 355
LpnPI CCDG 9 cut(s) 32, 51, 70, 83, 128, 149, 643, 651, 699
Lsp1109I GCAGC 3 cut(s) 30, 72, 286
LweI GCATC 1 cut(s) 502
MaeII ACGT 2 cut(s) 92, 581
MaeIII GTNAC 2 cut(s) 173, 543
MalI GATC 4 cut(s) 26, 320, 345, 626
MbiI CCGCTC 1 cut(s) 466
MboI GATC 4 cut(s) 24, 318, 343, 624
MboII GAAGA 1 cut(s) 662
MhlI GDGCHC 2 cut(s) 250, 352
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 3 cut(s) 391, 449, 477
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 8 cut(s) 195, 235, 264, 316, 392, 433, 570, 584
Mox20I TGGCCA 1 cut(s) 378
MroNI GCCGGC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 378
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 2 cut(s) 384, 632
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 2 cut(s) 163, 632
MspI CCGG 2 cut(s) 38, 57
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 6 cut(s) 43, 164, 296, 332, 638, 695
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 4 cut(s) 24, 318, 343, 624
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 371, 474
NlaIV GGNNCC 2 cut(s) 127, 351
NmuCI GTSAC 2 cut(s) 173, 543
OliI CACNNNNGTG 2 cut(s) 384, 632
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 460, 610
PkrI GCNGC 7 cut(s) 20, 36, 55, 62, 130, 276, 700
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 127, 351
PspPI GGNCC 3 cut(s) 126, 334, 683
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 2 cut(s) 163, 632
RsaI GTAC 2 cut(s) 141, 281
RsaNI GTAC 2 cut(s) 140, 280
RseI CAYNNNNRTG 2 cut(s) 384, 632
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 7 cut(s) 19, 35, 54, 61, 129, 275, 699
Sau3AI GATC 4 cut(s) 24, 318, 343, 624
Sau96I GGNCC 3 cut(s) 126, 334, 683
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 2 cut(s) 250, 352
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 169
SmiMI CAYNNNNRTG 2 cut(s) 384, 632
SmlI CTYRAG 2 cut(s) 524, 561
SmoI CTYRAG 2 cut(s) 524, 561
Sse9I AATT 3 cut(s) 391, 449, 477
SsiI CCGC 6 cut(s) 35, 54, 106, 129, 359, 464
TaaI ACNGT 2 cut(s) 173, 430
TaiI ACGT 2 cut(s) 95, 584
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 391, 449, 477
TauI GCSGC 3 cut(s) 37, 56, 131
TfiI GAWTC 2 cut(s) 460, 610
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 2 cut(s) 219, 391
TseFI GTSAC 2 cut(s) 173, 543
TseI GCWGC 4 cut(s) 18, 60, 274, 698
Tsp45I GTSAC 2 cut(s) 173, 543
TspDTI ATGAA 3 cut(s) 318, 391, 663
TspGWI ACGGA 4 cut(s) 60, 127, 180, 297
TspRI CASTG 2 cut(s) 219, 391
XapI RAATTY 1 cut(s) 391
ZraI GACGTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.