Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Forward (+)

11620122 .. 11620823

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTACACTCTCAGCTACTCAGCTGCTCCATCTTCCACTCCCGCTTCAAACTCAAAAGCCTCGCCATGCCCATTTCCACTTTGAATCCCTAAACCCTAACCCCAGGCTCTTCTCCTCCAACGACGTCGTATCCAATTGTCGGCCATTACAGGCCATTATCAACACTCCCCTTATCGCCACCGACGCCAACTCCGAACAAGAACCCCTCACTCTCCGCCGCATTTGCCAACCCCACGTTCCCGACCACGTGCTCAAAAGAATGGAGGACTTGGGGTTCGTCGTTTCGACGCCCGTACAGCGGCAGGCTCTGCCGACTCTGTTTTCCGGCCGCGACTGCATACTTCACGCGCAGACAGGTTCTGGGAAAACGCTGACGTACCTGCTTTTGATATTTTCTGCTGTGAACACTCGGAGATCAGCTGTTCAAGCTCTCGTTGTGGTTCCCACTAGGGAACTTGGGATGCAAGTAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

160

Amino Acids

17.62

Weight (kDa)

9.2

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	97 - 157	2.3e-17	DEAD/DEAH box helicase
ResIII	PF04851	101 - 157	4.4e-06	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	390
AccII	CGCG	2 cut(s)	333, 350
AciI	CCGC	5 cut(s)	44, 217, 220, 301, 331
AcoI	YGGCCR	2 cut(s)	143, 328
AcvI	CACGTG	1 cut(s)	250
AcyI	GRCGYC	3 cut(s)	126, 186, 290
AfaI	GTAC	2 cut(s)	297, 380
AfiI	CCNNNNNNNGG	2 cut(s)	141, 300
AgsI	TTSAA	3 cut(s)	50, 86, 428
AjnI	CCWGG	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	17, 25, 422, 431
AluI	AGCT	4 cut(s)	17, 25, 422, 431
Alw21I	GWGCWC	1 cut(s)	255
AlwNI	CAGNNNCTG	2 cut(s)	310, 362
AoxI	GGCC	3 cut(s)	143, 153, 328
ApeKI	GCWGC	1 cut(s)	25
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	450, 478
BfuAI	ACCTGC	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	4 cut(s)	26, 220, 302, 331
BlsI	GCNGC	4 cut(s)	27, 221, 303, 332
Bme1390I	CCNGG	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	250
BsaHI	GRCGYC	3 cut(s)	126, 186, 290
BsaJI	CCNNGG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 300
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	141, 300
BseMII	CTCAG	2 cut(s)	27, 35
BseRI	GAGGAG	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	12
Bsh1236I	CGCG	2 cut(s)	333, 350
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	3 cut(s)	145, 155, 330
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	141, 300
BsnI	GGCC	3 cut(s)	145, 155, 330
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	1 cut(s)	416
BspACI	CCGC	5 cut(s)	44, 217, 220, 301, 331
BspANI	GGCC	3 cut(s)	145, 155, 330
BspCNI	CTCAG	2 cut(s)	26, 34
BspFNI	CGCG	2 cut(s)	333, 350
BspLI	GGNNCC	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	390
BspQI	GCTCTTC	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	416
BssNI	GRCGYC	3 cut(s)	126, 186, 290
Bst2UI	CCWGG	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	3 cut(s)	126, 186, 290
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	13, 21
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	2 cut(s)	333, 350
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	416
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 225, 298, 310, 336, 428
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	2 cut(s)	333, 350
BstV1I	GCAGC	1 cut(s)	12
BstZI	CGGCCG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	145, 155, 330
BtsCI	GGATG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	2 cut(s)	310, 362
CfoI	GCGC	1 cut(s)	352
CseI	GACGC	2 cut(s)	194, 298
Csp6I	GTAC	2 cut(s)	296, 379
CviAII	CATG	1 cut(s)	68
CviQI	GTAC	2 cut(s)	296, 379
DdeI	CTNAG	2 cut(s)	13, 21
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
EaeI	YGGCCR	2 cut(s)	143, 328
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	206
EclXI	CGGCCG	1 cut(s)	328
Eco52I	CGGCCG	1 cut(s)	328
Eco72I	CACGTG	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	104
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	69, 341
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	26, 220, 302, 331
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	4 cut(s)	26, 220, 302, 331
FspBI	CTAG	2 cut(s)	450, 478
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	4 cut(s)	26, 220, 302, 331
HaeIII	GGCC	3 cut(s)	145, 155, 330
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	2 cut(s)	194, 298
HhaI	GCGC	1 cut(s)	352
Hin1I	GRCGYC	3 cut(s)	126, 186, 290
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	2 cut(s)	86, 316
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	196, 414
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	5 cut(s)	128, 131, 188, 284, 292
HpyCH4IV	ACGT	4 cut(s)	126, 237, 249, 377
HpyCH4V	TGCA	2 cut(s)	339, 466
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 225, 298, 310, 336, 428
HpyF3I	CTNAG	2 cut(s)	13, 21
HpySE526I	ACGT	4 cut(s)	126, 237, 249, 377
Hsp92I	GRCGYC	3 cut(s)	126, 186, 290
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	416
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	8 cut(s)	91, 118, 137, 290, 340, 342, 348, 395
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	2 cut(s)	450, 478
MaeII	ACGT	4 cut(s)	126, 237, 249, 377
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	2 cut(s)	26, 103
MfeI	CAATTG	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	72, 127, 218, 259
MspA1I	CMGCKG	3 cut(s)	25, 301, 422
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	333, 350
MwoI	GCNNNNNNNGC	6 cut(s)	185, 225, 298, 310, 336, 428
NdeII	GATC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	444
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	27, 221, 303, 332
PleI	GAGTC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	104
PspCI	CACGTG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	444
PstNI	CAGNNNCTG	2 cut(s)	310, 362
PvuII	CAGCTG	2 cut(s)	25, 422
RsaI	GTAC	2 cut(s)	297, 380
RsaNI	GTAC	2 cut(s)	296, 379
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	4 cut(s)	26, 220, 302, 331
Sau3AI	GATC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	453
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	44, 217, 220, 301, 331
SspMI	CTAG	2 cut(s)	450, 478
StyD4I	CCNGG	1 cut(s)	104
TaiI	ACGT	4 cut(s)	129, 240, 252, 380
TaqI	TCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	136
TauI	GCSGC	3 cut(s)	222, 304, 333
TfiI	GAWTC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	25
XspI	CTAG	2 cut(s)	450, 478
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.