Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004068

Physical Location & Seq

Genomic Coordinates Forward (+)

11620879 .. 11622640

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTCTTTTAGATGGGGGAATGTTGACCAGGCACAAGAGTTGGTTAAAGGCGGAGCCCCCTACTATTGTGGTGGCAACGATTGGGAGTTTGTGCCAAATGCTTGAGAAGCAGATGATTAAGCTTGAATCGATGCGAGTGCTTGTAATTGATGAGGTTGACTTCATGTTCAGTTCCAAACAAGTCGCTTCTCTTCGGAAGCTGTTGACATCCTACACTTCAATCAATACCCGACAGACTGTTTTTGCCAGTGCTTCCATCCCTCAGCACAGACGATTTTTACATGACTGTATACAGCAGAAATGGACCAAGAGTGATGCAATTCATGTCCATGTCAATCCAGTTCAGCCTATGCCATCATGTTTACAGCATAGATTTGTGATATGCCGTAAAAACAGAAGGAATGAGACTTTGCTGTCCTTATTACAGTCAGACGCGCCACGGTCTGCTATTATTTTTGTCGGCGAGCAGTCTGAGAAGTCAAAGAAGGCTGGAAATGCTCCATCAACAACAGTATTAATTGATTTCCTGAAGGCTTCATACGAGGGATATTCAGACATCCTCCTTTTGGAAGAAGACATGAATTTCAATTCACGAGCAGCTTCTCTATCGGAAGTCAGACAAGGAGGAAGCTATCTTCTTGTGTCAACAGATATAGCAGCCAGAGGGGTTGACCTGCCAGACACTACTCATATATACAACTTTGATCGATCAAGCTTGAACTGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

244

Amino Acids

27.28

Weight (kDa)

8.73

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	12 - 89	3.9e-10	DEAD/DEAH box helicase
Helicase_C	PF00271	135 - 237	2.8e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19210 AT5G19210 AT5G19210
fragaria_vesca	FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870 FvH4_4g14870
malus_domestica	MD16G1186800.v1.1
prunus_persica	Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1 Prupe.1G153600_v2.0.a1
pyrus_communis	pycom13g16050 pycom16g15660 pycom16g15670
rosa_chinensis	RchiOBHm_Chr4g0417341
rosa_laevigata	RLG00000007916
rosa_multiflora	Rmu_ssc0000216.1_g000002
rosa_roxburghii	Rroxscaffold_5G00361100
rosa_rugosa	Rorug04G0147000 Rorug04G0147100
rosa_samantha	Rh4AG210600 Rh4BG211100 Rh4CG221500 Rh4DG208500
rosa_wichuraiana	Rw4G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	292
AccII	CGCG	1 cut(s)	437
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	128, 222, 589, 721
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	124, 202, 602, 633, 717
AluI	AGCT	5 cut(s)	124, 202, 602, 633, 717
Alw26I	GTCTC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	599, 659
ApoI	RAATTY	1 cut(s)	583
AseI	ATTAAT	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	611, 671
BccI	CCATC	4 cut(s)	8, 266, 364, 511
BceAI	ACGGC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	684
BisI	GCNGC	2 cut(s)	600, 660
BlsI	GCNGC	2 cut(s)	601, 661
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	123, 307
BpiI	GAAGAC	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	2 cut(s)	131, 709
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	249, 341
BseBI	CCWGG	1 cut(s)	31
BseCI	ATCGAT	2 cut(s)	131, 709
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	3 cut(s)	209, 258, 558
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	278, 465
BseNI	ACTGG	2 cut(s)	249, 341
BseXI	GCAGC	2 cut(s)	611, 671
Bsh1236I	CGCG	1 cut(s)	437
BshVI	ATCGAT	2 cut(s)	131, 709
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	706, 710
BspACI	CCGC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	277, 466
BspDI	ATCGAT	2 cut(s)	131, 709
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	684
BsrI	ACTGG	2 cut(s)	249, 341
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	706, 710
BssNAI	GTATAC	1 cut(s)	293
BssSI	CACGAG	1 cut(s)	594
Bst1107I	GTATAC	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	5 cut(s)	241, 290, 429, 444, 514
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	264, 474
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	3 cut(s)	209, 258, 558
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	709, 713
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	2 cut(s)	706, 710
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 497, 723
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	611, 671
BstV2I	GAAGAC	1 cut(s)	582
BstZ17I	GTATAC	1 cut(s)	293
Bsu15I	ATCGAT	2 cut(s)	131, 709
BsuTUI	ATCGAT	2 cut(s)	131, 709
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	209, 258, 558
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	306
ClaI	ATCGAT	2 cut(s)	131, 709
CseI	GACGC	1 cut(s)	443
CviAII	CATG	6 cut(s)	166, 284, 326, 332, 360, 580
DdeI	CTNAG	2 cut(s)	264, 474
DpnI	GATC	2 cut(s)	708, 712
DpnII	GATC	2 cut(s)	706, 710
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	6 cut(s)	169, 287, 329, 335, 363, 583
FatI	CATG	6 cut(s)	165, 283, 325, 331, 359, 579
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	600, 660
FokI	GGATG	3 cut(s)	196, 245, 545
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	600, 660
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	600, 660
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	6 cut(s)	169, 287, 329, 335, 363, 583
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	5 cut(s)	27, 160, 207, 648, 673
HindII	GTYRAC	5 cut(s)	27, 160, 207, 648, 673
HindIII	AAGCTT	2 cut(s)	122, 715
HinfI	GANTC	1 cut(s)	128
Hpy166II	GTNNAC	7 cut(s)	27, 160, 207, 293, 365, 648, 673
Hpy188I	TCNGA	6 cut(s)	198, 433, 475, 556, 613, 620
Hpy188III	TCNNGA	2 cut(s)	529, 594
Hpy8I	GTNNAC	7 cut(s)	27, 160, 207, 293, 365, 648, 673
HpyAV	CCTTC	3 cut(s)	393, 481, 526
HpyCH4III	ACNGT	5 cut(s)	241, 290, 429, 444, 514
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 497, 723
HpyF3I	CTNAG	2 cut(s)	264, 474
Hsp92II	CATG	6 cut(s)	169, 287, 329, 335, 363, 583
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	706, 710
LmnI	GCTCC	2 cut(s)	55, 505
LpnPI	CCDG	9 cut(s)	16, 43, 262, 354, 477, 542, 676, 689, 693
Lsp1109I	GCAGC	2 cut(s)	611, 671
LweI	GCATC	2 cut(s)	123, 307
MalI	GATC	2 cut(s)	708, 712
MboI	GATC	2 cut(s)	706, 710
MboII	GAAGA	4 cut(s)	185, 584, 587, 629
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	5 cut(s)	147, 321, 519, 583, 589
MnlI	CCTC	6 cut(s)	148, 273, 538, 572, 620, 659
MseI	TTAA	3 cut(s)	47, 120, 518
MslI	CAYNNNNRTG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	3 cut(s)	109, 497, 723
NdeII	GATC	2 cut(s)	706, 710
NlaIII	CATG	6 cut(s)	169, 287, 329, 335, 363, 583
NlaIV	GGNNCC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	601, 661
PshBI	ATTAAT	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	306
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	47, 120, 518
SatI	GCNGC	2 cut(s)	600, 660
Sau3AI	GATC	2 cut(s)	706, 710
Sau96I	GGNCC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	7 cut(s)	126, 159, 204, 604, 635, 678, 719
SfaNI	GCATC	2 cut(s)	123, 307
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	147, 321, 519, 583, 589
SsiI	CCGC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	5 cut(s)	241, 290, 429, 444, 514
TaqI	TCGA	2 cut(s)	131, 709
TasI	AATT	5 cut(s)	147, 321, 519, 583, 589
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	47, 120, 518
Tru9I	TTAA	3 cut(s)	47, 120, 518
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	599, 659
TspDTI	ATGAA	4 cut(s)	154, 314, 528, 596
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	306
VspI	ATTAAT	1 cut(s)	518
XapI	RAATTY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.