pycom16g15880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016049
Physical Location & Seq
Reverse (-)
11794432 .. 11795388
957 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGTGCCTGCTTCTATATTCTAAACACCACCTGAGCTCTCTTGTTTCGCCTCCACCAGACCACCTAACTTTTATAATCCAAACGATAATTACTGCCCAATTACTCTTCCTTCCCTTTATATATACCACATACCCTCATGCATTTGCTCAAAACCACTCTTTCACTACCACAAAAATGGGATCCCTAGAAATTGTTCAGGCAACCCCTAGATCCGTCGGCACGCCTTCGAGTCCGCGGATTTCGTTCTCCGCTGAGTTCCTCGACGAGAACAACTTCACCTCCATCACCCCGAATTCGCGCGGCGAAGTACAAGACAAAAAAATGGAGGGTGGTGATCACCAAAAGGTGCGTAACCCGGATTTTGAGTTTCTCTCGAGCAATGTGAGTAGCCATGCCATGTTGTCTGCAGATGAGCTATTTTTCGAAGGGAAGCTCCTTCCCTTTTGGCAAAAGCAGCACGCCGAACGGCTCACGAAGCTCAACCTCAACACCAAGGACGTCGAGGGAGACGAGAATGAGGAGGGGGTGAACAAGGAGGAGAGCCGGGGGAGTCGGTTTGTGGACGACGATCCATCTCCGAGGCCGCCTAAGTGCACGATTTTGTGGAAGGAGCTACTGAGACTGAAGAAGCAACGCGCTTCGACATTGTCCCCATCTTCCTCGTCCTCGTCTTCCTCTTCTTCCTCGAACTCGTTGGCGGATATAGCTACAACGACTGATCAAGAGAAGGAAGGGAACAAAGAGAAGTATATGAAGAGGATAAAGAAAGGGTTGGAACGAACAAGATCCGCAAGCATAAGAATAAGGCCGATGGTAAATGTGCCAATTTGCAAACAGGTGAAGAGCAGTGCCTTGCCACCTTTGTTTCCTCTCAGGAAAGGAAGAGTACTAGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.64

Weight (kDa)

9.25

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05980
fragaria_vesca FvH4_4g15060
malus_domestica MD13G1188400.v1.1 MD16G1188800.v1.1
prunus_persica Prupe.1G155500_v2.0.a1
pyrus_communis pycom13g16270 pycom16g15880
rosa_chinensis RchiOBHm_Chr4g0416801
rosa_laevigata RLG00000007949
rosa_multiflora Rmu_co8456203.1_g000001 Rmu_sc0015663.1_g000002
rosa_roxburghii Rroxscaffold_5G00360680
rosa_rugosa Rorug04G0145000
rosa_samantha Rh4CG218500
rosa_wichuraiana Rw4G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AatII GACGTC 1 cut(s) 501
AccII CGCG 4 cut(s) 235, 298, 300, 636
AciI CCGC 7 cut(s) 233, 235, 249, 300, 584, 698, 789
AclWI GGATC 5 cut(s) 174, 187, 204, 563, 780
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 309, 888
AluBI AGCT 6 cut(s) 36, 415, 433, 478, 613, 707
AluI AGCT 6 cut(s) 36, 415, 433, 478, 613, 707
Alw21I GWGCWC 2 cut(s) 38, 596
Alw26I GTCTC 2 cut(s) 501, 613
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 5 cut(s) 174, 187, 204, 563, 780
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 2 cut(s) 581, 806
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 454
ApoI RAATTY 1 cut(s) 292
Asp700I GAANNNNTTC 2 cut(s) 192, 272
AspLEI GCGC 2 cut(s) 300, 638
AsuC2I CCSGG 2 cut(s) 356, 545
AsuHPI GGTGA 6 cut(s) 268, 277, 329, 344, 538, 850
AsuII TTCGAA 1 cut(s) 423
AvaI CYCGRG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 596
BamHI GGATCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 38, 596
BbvI GCAGC 1 cut(s) 466
BccI CCATC 4 cut(s) 290, 580, 661, 805
BceAI ACGGC 1 cut(s) 482
BclI TGATCA 2 cut(s) 334, 718
BcnI CCSGG 2 cut(s) 356, 545
BcoDI GTCTC 2 cut(s) 501, 613
BfaI CTAG 3 cut(s) 185, 207, 890
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 3 cut(s) 301, 455, 584
BlsI GCNGC 3 cut(s) 302, 456, 585
BmcAI AGTACT 1 cut(s) 888
Bme1390I CCNGG 2 cut(s) 356, 545
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 356, 545
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 2 cut(s) 356, 388
Bpu10I CCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 423
BpuMI CCSGG 2 cut(s) 356, 545
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 233, 492, 544, 578
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 233, 492, 544, 578
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 4 cut(s) 23, 243, 608, 886
BseRI GAGGAG 2 cut(s) 533, 551
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 1 cut(s) 466
Bsh1236I CGCG 4 cut(s) 235, 298, 300, 636
BshFI GGCC 2 cut(s) 583, 808
BsiHKAI GWGCWC 2 cut(s) 38, 596
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 2 cut(s) 356, 544
BslFI GGGAC 1 cut(s) 634
BsmAI GTCTC 2 cut(s) 501, 613
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 2 cut(s) 583, 808
BsoBI CYCGRG 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 38, 596
Bsp143I GATC 6 cut(s) 179, 209, 334, 568, 718, 785
BspACI CCGC 7 cut(s) 233, 235, 249, 300, 584, 698, 789
BspANI GGCC 2 cut(s) 583, 808
BspCNI CTCAG 4 cut(s) 24, 244, 609, 885
BspFNI CGCG 4 cut(s) 235, 298, 300, 636
BspLI GGNNCC 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 5 cut(s) 174, 187, 204, 563, 780
BspQI GCTCTTC 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 233, 492, 544, 578
BssMI GATC 6 cut(s) 179, 209, 334, 568, 718, 785
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 492
Bst6I CTCTTC 5 cut(s) 110, 682, 749, 836, 877
BstACI GRCGYC 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 4 cut(s) 8, 221, 459, 793
BstDEI CTNAG 5 cut(s) 32, 252, 588, 617, 872
BstDSI CCRYGG 1 cut(s) 233
BstFNI CGCG 4 cut(s) 235, 298, 300, 636
BstHHI GCGC 2 cut(s) 300, 638
BstKTI GATC 6 cut(s) 182, 212, 337, 571, 721, 788
BstMAI GTCTC 2 cut(s) 501, 613
BstMBI GATC 6 cut(s) 179, 209, 334, 568, 718, 785
BstMWI GCNNNNNNNGC 3 cut(s) 454, 475, 704
BstSCI CCNGG 2 cut(s) 354, 543
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 4 cut(s) 235, 298, 300, 636
BstV1I GCAGC 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 3 cut(s) 179, 209, 785
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 3 cut(s) 179, 209, 785
BsuRI GGCC 2 cut(s) 583, 808
BtgI CCRYGG 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 853
BtsIMutI CAGTG 1 cut(s) 853
Cac8I GCNNGC 4 cut(s) 8, 221, 459, 793
CfoI GCGC 2 cut(s) 300, 638
Cfr42I CCGCGG 1 cut(s) 236
Csp6I GTAC 2 cut(s) 308, 887
CviAII CATG 3 cut(s) 137, 392, 397
CviQI GTAC 2 cut(s) 308, 887
DdeI CTNAG 5 cut(s) 32, 252, 588, 617, 872
DpnI GATC 6 cut(s) 181, 211, 336, 570, 720, 787
DpnII GATC 6 cut(s) 179, 209, 334, 568, 718, 785
Eam1104I CTCTTC 5 cut(s) 110, 682, 749, 836, 877
EarI CTCTTC 5 cut(s) 110, 682, 749, 836, 877
EciI GGCGGA 1 cut(s) 713
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 492
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 3 cut(s) 140, 395, 400
FaqI GGGAC 1 cut(s) 634
FatI CATG 3 cut(s) 136, 391, 396
FbaI TGATCA 2 cut(s) 334, 718
Fnu4HI GCNGC 3 cut(s) 301, 455, 584
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 301, 455, 584
FspBI CTAG 3 cut(s) 185, 207, 890
GlaI GCGC 2 cut(s) 299, 637
GluI GCNGC 3 cut(s) 301, 455, 584
HaeIII GGCC 2 cut(s) 583, 808
HapII CCGG 2 cut(s) 356, 544
HhaI GCGC 2 cut(s) 300, 638
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 3 cut(s) 140, 395, 400
Hin6I GCGC 2 cut(s) 298, 636
HinP1I GCGC 2 cut(s) 298, 636
HinfI GANTC 2 cut(s) 229, 550
HpaII CCGG 2 cut(s) 356, 544
HphI GGTGA 6 cut(s) 268, 277, 329, 344, 538, 850
Hpy166II GTNNAC 3 cut(s) 529, 562, 594
Hpy188I TCNGA 1 cut(s) 579
Hpy188III TCNNGA 4 cut(s) 373, 472, 722, 874
Hpy8I GTNNAC 3 cut(s) 529, 562, 594
Hpy99I CGWCG 4 cut(s) 218, 266, 503, 569
HpyAV CCTTC 7 cut(s) 119, 234, 419, 446, 601, 721, 725
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 4 cut(s) 140, 407, 594, 831
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 475, 704
HpyF3I CTNAG 5 cut(s) 32, 252, 588, 617, 872
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 3 cut(s) 140, 395, 400
HspAI GCGC 2 cut(s) 298, 636
Ksp22I TGATCA 2 cut(s) 334, 718
KspI CCGCGG 1 cut(s) 236
Kzo9I GATC 6 cut(s) 179, 209, 334, 568, 718, 785
LguI GCTCTTC 1 cut(s) 836
LmnI GCTCC 2 cut(s) 438, 610
LpnPI CCDG 8 cut(s) 20, 44, 69, 182, 369, 557, 821, 859
Lsp1109I GCAGC 1 cut(s) 466
MaeI CTAG 3 cut(s) 185, 207, 890
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 1 cut(s) 350
MalI GATC 6 cut(s) 181, 211, 336, 570, 720, 787
MboI GATC 6 cut(s) 179, 209, 334, 568, 718, 785
MboII GAAGA 9 cut(s) 97, 637, 648, 663, 669, 672, 766, 853, 894
MflI RGATCY 3 cut(s) 179, 209, 785
MhlI GDGCHC 2 cut(s) 38, 596
MluCI AATT 5 cut(s) 87, 98, 189, 292, 825
MlyI GAGTC 2 cut(s) 238, 559
MmeI TCCRAC 1 cut(s) 753
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 2 cut(s) 192, 272
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 235, 251
MspI CCGG 2 cut(s) 356, 544
MspR9I CCNGG 2 cut(s) 356, 545
MvnI CGCG 4 cut(s) 235, 298, 300, 636
MwoI GCNNNNNNNGC 3 cut(s) 454, 475, 704
NciI CCSGG 2 cut(s) 356, 545
NdeII GATC 6 cut(s) 179, 209, 334, 568, 718, 785
NlaIII CATG 3 cut(s) 140, 395, 400
NlaIV GGNNCC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 142
NspV TTCGAA 1 cut(s) 423
PaeR7I CTCGAG 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 836
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PdmI GAANNNNTTC 2 cut(s) 192, 272
PflFI GACNNNGTC 1 cut(s) 646
PkrI GCNGC 3 cut(s) 302, 456, 585
PleI GAGTC 2 cut(s) 237, 558
PpsI GAGTC 2 cut(s) 237, 558
PsiI TTATAA 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 3 cut(s) 179, 209, 785
PsyI GACNNNGTC 1 cut(s) 646
RsaI GTAC 2 cut(s) 309, 888
RsaNI GTAC 2 cut(s) 308, 887
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 38
SacII CCGCGG 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 836
SatI GCNGC 3 cut(s) 301, 455, 584
Sau3AI GATC 6 cut(s) 179, 209, 334, 568, 718, 785
ScaI AGTACT 1 cut(s) 888
SchI GAGTC 2 cut(s) 238, 559
ScrFI CCNGG 2 cut(s) 356, 545
SduI GDGCHC 2 cut(s) 38, 596
SfcI CTRYAG 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 373
Sfr303I CCGCGG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 423
SgrBI CCGCGG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 5 cut(s) 87, 98, 189, 292, 825
SsiI CCGC 7 cut(s) 233, 235, 249, 300, 584, 698, 789
SspMI CTAG 3 cut(s) 185, 207, 890
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 354, 543
StyI CCWWGG 1 cut(s) 492
TaiI ACGT 1 cut(s) 501
TaqI TCGA 7 cut(s) 227, 261, 374, 423, 501, 641, 686
TasI AATT 5 cut(s) 87, 98, 189, 292, 825
TatI WGTACW 2 cut(s) 307, 886
TauI GCSGC 2 cut(s) 303, 586
TscAI CASTG 1 cut(s) 853
TseI GCWGC 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 767
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 853
Tth111I GACNNNGTC 1 cut(s) 646
VneI GTGCAC 1 cut(s) 592
XapI RAATTY 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 373
XmnI GAANNNNTTC 2 cut(s) 192, 272
XspI CTAG 3 cut(s) 185, 207, 890
ZraI GACGTC 1 cut(s) 499
ZrmI AGTACT 1 cut(s) 888
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.