Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010171

Physical Location & Seq

Genomic Coordinates Forward (+)

15808494 .. 15810311

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTGCCACCGCAGCTGCAGCCATGAGCTCATCTTTCTCCCCCTCCATCTACACCGTCAAATGCATTCGTTCATCATCCAATCATTCATCCCCTGATCATCTACACCTTAAAATGTCACCAAATCGCATGCCATCACCGTCATCACTATCCCACTCTTTTGCTATAGAGCCACTACTTTCCATTAGTAGTATCGGGACCTCGAATAAGTTTCGGGTGCTGAGGATAACAACTACTTGTGTTGCTCAAGAAGGGGTGGCAGTGACTGATGAGGTTGAAGTTGAGCAAGTGGTCTTGGCCGAGGAGGAGGAGGAGAAGGAGGAGAAGCAAGCAGAGGAACAAGTAGTTGCCGCGGTGGAAGAATTAGGAGGAGGAGGAGAGGCGGCAGCTGGTGGAGTTTCAGGAGAGGAGGAGGTTGCTGTGAACACAAAGCTTTACTTTGGGAATCTTCCTTATAGTGTGGACAGTGCACAGCTTGCTGGGATTATTCAGGACTTTGCTAGTCCTGAGCTCATTGAGGTTCTGTATCATAGGGAGACTGGAAAAAGCAGAGGATTTGCATTTGTGACAATGAGTACTCCCGAAGATTGTAAAGCTGTCATTGAAAATCTTGACGGACGTGAATTTGCTGGGCGAACCTTGAGGGTGAACTTTTCGGACAGGCCGAGAGCGAAAGTACCTCTATATCCTGAAACTGAGTACAAGCTTTTCGTTGGGAATTTATCCTGGTCAGTCACATCTGAAAGTTTGACAAAAGCTTTTCAAGAATATGGAACCGTGGTTGGAGCTAGGGTTCTATATGATGGCGAAACAGGAAGGTCTCGTGGCTATGGATTCGTATGCTACTCAACGAAATCAGAAATGGACGCTGCCTTGGCATCTCTCAATGGATTTGAACTAGAAGGAAGAGCATTGCGTGTAAGCTTGGCTGAAGGAAAACGTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

316

Amino Acids

34.01

Weight (kDa)

4.95

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	145 - 215	4.5e-14	RNA recognition motif
RRM_1	PF00076	236 - 306	3.5e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60000 AT1G60000
fragaria_vesca	FvH4_4g04650 FvH4_4g04650
malus_domestica	MD16G1226600.v1.1
prunus_persica	Prupe.1G048800_v2.0.a1
pyrus_communis	pycom16g18970
rosa_chinensis	RchiOBHm_Chr4g0395451
rosa_laevigata	RLG00000009622
rosa_multiflora	Rmu_co8444787.1_g000001 Rmu_sc0004598.1_g000008 Rmu_sc0012715.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340390
rosa_rugosa	Rorug03G0357200
rosa_samantha	Rh4AG059900 Rh4BG058500 Rh4CG064200 Rh4DG055100
rosa_wichuraiana	Rw0G003330 Rw0G022530 Rw4G004800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	353
AciI	CCGC	4 cut(s)	12, 351, 353, 383
AclI	AACGTT	1 cut(s)	940
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	623, 718
AfaI	GTAC	3 cut(s)	577, 678, 701
AgsI	TTSAA	4 cut(s)	278, 605, 764, 896
AjiI	CACGTC	1 cut(s)	620
AjnI	CCWGG	1 cut(s)	725
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
Alw21I	GWGCWC	3 cut(s)	32, 472, 513
Alw26I	GTCTC	2 cut(s)	530, 825
Alw44I	GTGCAC	1 cut(s)	468
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	297, 662
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	6 cut(s)	5, 14, 17, 20, 386, 869
ApoI	RAATTY	2 cut(s)	623, 718
Asp700I	GAANNNNTTC	1 cut(s)	940
AspS9I	GGNCC	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	111, 129, 658
AvaII	GGWCC	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	472
BanII	GRGCYC	2 cut(s)	32, 513
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	3 cut(s)	32, 472, 513
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	4, 26, 32, 398, 856
BccI	CCATC	3 cut(s)	56, 142, 797
BciT130I	CCWGG	1 cut(s)	727
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	530, 825
BfaI	CTAG	3 cut(s)	501, 789, 899
BfmI	CTRYAG	2 cut(s)	18, 165
BisI	GCNGC	8 cut(s)	6, 15, 18, 21, 351, 384, 387, 870
BlsI	GCNGC	8 cut(s)	7, 16, 19, 22, 352, 385, 388, 871
BmcAI	AGTACT	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	727
Bme18I	GGWCC	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	199, 775
BmrFI	CCNGG	1 cut(s)	727
BmsI	GCATC	1 cut(s)	887
Bpu10I	CCTNAGC	2 cut(s)	221, 507
BpuEI	CTTGAG	2 cut(s)	231, 661
BsaI	GGTCTC	1 cut(s)	825
BsaJI	CCNNGG	4 cut(s)	300, 351, 777, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	777, 807
Bse1I	ACTGG	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	911
BseBI	CCWGG	1 cut(s)	727
BseDI	CCNNGG	4 cut(s)	300, 351, 777, 873
BseGI	GGATG	2 cut(s)	77, 89
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	3 cut(s)	212, 498, 687
BseNI	ACTGG	1 cut(s)	544
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	5 cut(s)	4, 26, 32, 398, 856
BseYI	CCCAGC	2 cut(s)	479, 629
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	299, 664
BsiHKAI	GWGCWC	3 cut(s)	32, 472, 513
BslFI	GGGAC	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	530, 825
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	299, 664
Bso31I	GGTCTC	1 cut(s)	825
Bsp1286I	GDGCHC	3 cut(s)	32, 472, 513
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	4 cut(s)	12, 351, 353, 383
BspANI	GGCC	2 cut(s)	299, 664
BspCNI	CTCAG	3 cut(s)	213, 499, 688
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	199, 775
BspMAI	CTGCAG	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	901
BspTNI	GGTCTC	1 cut(s)	825
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	4 cut(s)	300, 351, 777, 873
BssMI	GATC	1 cut(s)	97
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	727
Bst4CI	ACNGT	4 cut(s)	58, 141, 467, 778
Bst6I	CTCTTC	1 cut(s)	901
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	131, 330, 477
BstDEI	CTNAG	3 cut(s)	221, 507, 696
BstDSI	CCRYGG	2 cut(s)	351, 777
BstF5I	GGATG	2 cut(s)	77, 89
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	2 cut(s)	530, 825
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 20, 476, 875
BstNI	CCWGG	1 cut(s)	727
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	2 cut(s)	18, 165
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	5 cut(s)	4, 26, 32, 398, 856
BsuRI	GGCC	2 cut(s)	299, 664
BtgI	CCRYGG	2 cut(s)	351, 777
BtrI	CACGTC	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	77, 89
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 472
Cac8I	GCNNGC	3 cut(s)	131, 330, 477
CaiI	CAGNNNCTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	198
Cfr42I	CCGCGG	1 cut(s)	354
CseI	GACGC	1 cut(s)	875
Csp6I	GTAC	3 cut(s)	576, 677, 700
CviAII	CATG	2 cut(s)	25, 130
CviQI	GTAC	3 cut(s)	576, 677, 700
DdeI	CTNAG	3 cut(s)	221, 507, 696
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	901
EarI	CTCTTC	1 cut(s)	901
Ecl136II	GAGCTC	2 cut(s)	30, 511
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	2 cut(s)	32, 513
Eco31I	GGTCTC	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	2 cut(s)	30, 511
EcoICRI	GAGCTC	2 cut(s)	30, 511
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	2 cut(s)	32, 513
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	2 cut(s)	28, 133
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	24, 129
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	8 cut(s)	6, 15, 18, 21, 351, 384, 387, 870
FokI	GGATG	2 cut(s)	64, 76
FriOI	GRGCYC	2 cut(s)	32, 513
Fsp4HI	GCNGC	8 cut(s)	6, 15, 18, 21, 351, 384, 387, 870
FspBI	CTAG	3 cut(s)	501, 789, 899
GluI	GCNGC	8 cut(s)	6, 15, 18, 21, 351, 384, 387, 870
GsaI	CCCAGC	2 cut(s)	483, 633
HaeIII	GGCC	2 cut(s)	299, 664
HgaI	GACGC	1 cut(s)	875
Hin1II	CATG	2 cut(s)	28, 133
HindIII	AAGCTT	4 cut(s)	431, 704, 756, 922
HinfI	GANTC	2 cut(s)	445, 834
HphI	GGTGA	3 cut(s)	111, 129, 658
Hpy166II	GTNNAC	4 cut(s)	424, 463, 470, 649
Hpy188I	TCNGA	3 cut(s)	658, 742, 859
Hpy188III	TCNNGA	9 cut(s)	196, 248, 402, 491, 506, 581, 611, 689, 764
Hpy8I	GTNNAC	4 cut(s)	424, 463, 470, 649
HpyAV	CCTTC	5 cut(s)	245, 310, 810, 896, 926
HpyCH4III	ACNGT	4 cut(s)	58, 141, 467, 778
HpyCH4IV	ACGT	2 cut(s)	619, 940
HpyCH4V	TGCA	4 cut(s)	20, 66, 470, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 20, 476, 875
HpyF3I	CTNAG	3 cut(s)	221, 507, 696
HpySE526I	ACGT	2 cut(s)	619, 940
Hsp92II	CATG	2 cut(s)	28, 133
Ksp22I	TGATCA	1 cut(s)	97
KspI	CCGCGG	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	901
LmnI	GCTCC	1 cut(s)	785
Lsp1109I	GCAGC	5 cut(s)	4, 26, 32, 398, 856
LweI	GCATC	1 cut(s)	887
MaeI	CTAG	3 cut(s)	501, 789, 899
MaeII	ACGT	2 cut(s)	619, 940
MaeIII	GTNAC	4 cut(s)	117, 262, 565, 733
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	371, 440, 596, 918
MhlI	GDGCHC	3 cut(s)	32, 472, 513
MluCI	AATT	3 cut(s)	362, 623, 718
MmeI	TCCRAC	1 cut(s)	763
Mph1103I	ATGCAT	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	940
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	3 cut(s)	17, 353, 389
MspR9I	CCNGG	1 cut(s)	727
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	727
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 20, 476, 875
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	28, 133
NlaIV	GGNNCC	2 cut(s)	199, 775
NmeAIII	GCCGAG	2 cut(s)	325, 690
NmuCI	GTSAC	4 cut(s)	117, 262, 565, 733
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	1 cut(s)	133
PaeI	GCATGC	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PctI	GAATGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	940
PfeI	GAWTC	2 cut(s)	445, 834
PkrI	GCNGC	8 cut(s)	7, 16, 19, 22, 352, 385, 388, 871
PpuMI	RGGWCCY	1 cut(s)	198
Psp124BI	GAGCTC	2 cut(s)	32, 513
Psp1406I	AACGTT	1 cut(s)	940
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	725
PspFI	CCCAGC	2 cut(s)	479, 629
PspGI	CCWGG	1 cut(s)	725
PspN4I	GGNNCC	2 cut(s)	199, 775
PspPI	GGNCC	1 cut(s)	198
PspPPI	RGGWCCY	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	266
PvuII	CAGCTG	2 cut(s)	17, 389
RsaI	GTAC	3 cut(s)	577, 678, 701
RsaNI	GTAC	3 cut(s)	576, 677, 700
SacI	GAGCTC	2 cut(s)	32, 513
SacII	CCGCGG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	901
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	8 cut(s)	6, 15, 18, 21, 351, 384, 387, 870
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	3 cut(s)	32, 472, 513
SfaNI	GCATC	1 cut(s)	887
SfcI	CTRYAG	2 cut(s)	18, 165
Sfr303I	CCGCGG	1 cut(s)	354
SgrBI	CCGCGG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	246, 640
SmoI	CTYRAG	2 cut(s)	246, 640
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	3 cut(s)	362, 623, 718
SsiI	CCGC	4 cut(s)	12, 351, 353, 383
SspMI	CTAG	3 cut(s)	501, 789, 899
SstI	GAGCTC	2 cut(s)	32, 513
StyD4I	CCNGG	1 cut(s)	725
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	4 cut(s)	58, 141, 467, 778
TaiI	ACGT	2 cut(s)	622, 943
TaqI	TCGA	1 cut(s)	203
TasI	AATT	3 cut(s)	362, 623, 718
TatI	WGTACW	2 cut(s)	575, 699
TauI	GCSGC	2 cut(s)	353, 386
TfiI	GAWTC	2 cut(s)	445, 834
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	267, 472
TseFI	GTSAC	4 cut(s)	117, 262, 565, 733
TseI	GCWGC	6 cut(s)	5, 14, 17, 20, 386, 869
Tsp45I	GTSAC	4 cut(s)	117, 262, 565, 733
TspDTI	ATGAA	3 cut(s)	63, 78, 933
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	2 cut(s)	267, 472
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	2 cut(s)	623, 718
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	940
XspI	CTAG	3 cut(s)	501, 789, 899
ZrmI	AGTACT	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.