Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009098

Physical Location & Seq

Genomic Coordinates Reverse (-)

16206646 .. 16207731

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACACTGACACCTGTTGCAGCTCGAGCTCTTCTTAACCTTATGGCATGCGTTCTTCTGAGTGATCTTGGAGCATCCATTACAGAAGTAGCACAGGATGCTCTTGTTGCAGAGTATGCCCAAGAGAAAAATATGACTGGCCTCCAGTCTTATGCATTCATGGCAGCGGCTGCTGGTGGAATCCTTGACAACTTAATAGGTGGATATTTCTTGATGAAAACGCCGCCCAGAACCATGTGTCTTGTATTTGCAGTTTTACCCTCTGCTCAACTTGCAATTTCGTTGAGAATACGAGAGGAATCTCTTGATTTACCACAATTACTAGATGATATAGCTCGTCCTCTTATTTGGATTGTAGCTTCTATTGCCATGGTCCTAGTCCTGTCAGGTTCTATCTTCTGCTATCAAACACAATGTCTACATCTCGATCCTGTAAAAATTGGCATGTCTCGAGTGGTCGGCCAGTTGGTGCTTCTTTCCACTGTTGTACTTTATGACCGTTATTGGAAAAAAGCTCCGATAAGAAAGATAAGAAAGTTGGTTGGTCTTGTTCAGCTGGTGTATGCCTTTTCCCTTCTTCTTGACCTTGTATTAGTGAGACAGATCAATGTTAGACTGGGGATTCCGAATGAGGTGTTTGTCCTTTGTTTTTCGGGGTTGGCAGAGACTATTGCGCAGTTTAAGATCTTGCCTTTCACAGTACTATTTGCGAATATATGTCCTCGAGGATGTGAAGGATCACTGACTTCTTTCTTAGCATCAGCTTTGTGTTTATCATCGATAGCTAGTGGGTTTATAGGTGCTGGATTGGCCCCTCTGATAGGAATAACGGCAGGCGACTACTCGAGCCTGGTTTTAGGGATTATGGCACAGTTCCTTGCTGCTTTACTGCCTTTAGGACGGCTTCATAATTTACCAATGTCAGAAGGTGTTGTTGGGAAGGAGAGGAAGAGAGGTTTCTGTAGAAGAAGTCAGAAAAATAGAAGGGTTGGTCGAGTGGTGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

337

Amino Acids

36.36

Weight (kDa)

9.37

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BT1	PF03092	9 - 106	3.5e-19	BT1 family
BT1	PF03092	110 - 318	1.3e-53	BT1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04570 AT2G33280 AT2G33280 AT2G33280
fragaria_vesca	FvH4_4g05110 FvH4_4g05110
malus_domestica	MD13G1225100.v1.1
prunus_persica	Prupe.1G051600_v2.0.a1
pyrus_communis	pycom13g19850 pycom16g19200
rosa_chinensis	RchiOBHm_Chr4g0396031
rosa_laevigata	RLG00000009579
rosa_multiflora	Rmu_sc0015594.1_g000010 Rmu_sc0029066.1_g000001
rosa_roxburghii	Rroxscaffold_5G00340820
rosa_rugosa	Rorug03G0352900
rosa_samantha	Rh4AG064700 Rh4AG066000 Rh4BG063400 Rh4CG070200 Rh4DG060100
rosa_wichuraiana	Rw4G005250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	723
Acc16I	TGCGCA	1 cut(s)	675
AccI	GTMKAC	1 cut(s)	418
AciI	CCGC	2 cut(s)	167, 224
AclWI	GGATC	2 cut(s)	422, 745
AcoI	YGGCCR	1 cut(s)	460
AfaI	GTAC	2 cut(s)	489, 702
AfiI	CCNNNNNNNGG	1 cut(s)	821
AjnI	CCWGG	1 cut(s)	849
AjuI	GAANNNNNNNTTGG	2 cut(s)	918, 950
AluBI	AGCT	8 cut(s)	23, 29, 335, 359, 515, 556, 764, 785
AluI	AGCT	8 cut(s)	23, 29, 335, 359, 515, 556, 764, 785
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	3 cut(s)	453, 592, 659
AlwI	GGATC	2 cut(s)	422, 745
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	4 cut(s)	24, 450, 723, 844
AoxI	GGCC	3 cut(s)	139, 460, 810
ApeKI	GCWGC	4 cut(s)	20, 164, 170, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	373, 811
AvaI	CYCGRG	4 cut(s)	24, 450, 723, 844
AvaII	GGWCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	32, 157, 176, 868
BceAI	ACGGC	2 cut(s)	846, 917
BciT130I	CCWGG	1 cut(s)	851
BcoDI	GTCTC	3 cut(s)	453, 592, 659
BfaI	CTAG	3 cut(s)	323, 377, 786
BfmI	CTRYAG	1 cut(s)	961
BglII	AGATCT	1 cut(s)	684
BisI	GCNGC	6 cut(s)	21, 165, 168, 171, 224, 882
BlsI	GCNGC	6 cut(s)	22, 166, 169, 172, 225, 883
BmcAI	AGTACT	1 cut(s)	702
Bme1390I	CCNGG	1 cut(s)	851
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	4 cut(s)	24, 450, 723, 844
BmgT120I	GGNCC	2 cut(s)	373, 811
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	851
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	3 cut(s)	83, 88, 767
BmuI	ACTGGG	1 cut(s)	626
BpmI	CTGGAG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	4 cut(s)	142, 145, 463, 621
BseBI	CCWGG	1 cut(s)	851
BseCI	ATCGAT	1 cut(s)	779
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	74, 103, 734
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	4 cut(s)	142, 145, 463, 621
BseXI	GCAGC	4 cut(s)	32, 157, 176, 868
BshFI	GGCC	3 cut(s)	141, 462, 812
BshVI	ATCGAT	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	31
BsiHKCI	CYCGRG	4 cut(s)	24, 450, 723, 844
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	3 cut(s)	453, 592, 659
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	141, 462, 812
BsoBI	CYCGRG	4 cut(s)	24, 450, 723, 844
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	64, 427, 603, 684, 737
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	2 cut(s)	167, 224
BspANI	GGCC	3 cut(s)	141, 462, 812
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	2 cut(s)	422, 745
BspQI	GCTCTTC	1 cut(s)	36
BsrI	ACTGG	4 cut(s)	142, 145, 463, 621
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	5 cut(s)	64, 427, 603, 684, 737
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	4 cut(s)	484, 500, 700, 873
Bst6I	CTCTTC	2 cut(s)	36, 944
BstAPI	GCANNNNNTGC	3 cut(s)	98, 116, 170
BstC8I	GCNNGC	2 cut(s)	49, 835
BstDEI	CTNAG	2 cut(s)	59, 754
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	819
BstF5I	GGATG	3 cut(s)	74, 103, 734
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	5 cut(s)	67, 430, 606, 687, 740
BstMAI	GTCTC	3 cut(s)	453, 592, 659
BstMBI	GATC	5 cut(s)	64, 427, 603, 684, 737
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 98, 107, 116, 161, 170, 272, 365, 809
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	2 cut(s)	51, 448
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	1 cut(s)	961
BstV1I	GCAGC	4 cut(s)	32, 157, 176, 868
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
Bsu15I	ATCGAT	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	141, 462, 812
BsuTUI	ATCGAT	1 cut(s)	779
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	74, 103, 734
BtsIMutI	CAGTG	3 cut(s)	5, 480, 740
Cac8I	GCNNGC	2 cut(s)	49, 835
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	373, 811
ClaI	ATCGAT	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	488, 701
CviAII	CATG	5 cut(s)	48, 160, 235, 370, 445
CviQI	GTAC	2 cut(s)	488, 701
DdeI	CTNAG	2 cut(s)	59, 754
DpnI	GATC	5 cut(s)	66, 429, 605, 686, 739
DpnII	GATC	5 cut(s)	64, 427, 603, 684, 737
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	2 cut(s)	36, 944
EarI	CTCTTC	2 cut(s)	36, 944
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	29
Eco88I	CYCGRG	4 cut(s)	24, 450, 723, 844
EcoICRI	GAGCTC	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	819
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	5 cut(s)	51, 163, 238, 373, 448
FatI	CATG	5 cut(s)	47, 159, 234, 369, 444
FblI	GTMKAC	1 cut(s)	418
Fnu4HI	GCNGC	6 cut(s)	21, 165, 168, 171, 224, 882
FokI	GGATG	3 cut(s)	61, 110, 741
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	6 cut(s)	21, 165, 168, 171, 224, 882
FspBI	CTAG	3 cut(s)	323, 377, 786
FspI	TGCGCA	1 cut(s)	675
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	6 cut(s)	21, 165, 168, 171, 224, 882
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	141, 462, 812
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	5 cut(s)	51, 163, 238, 373, 448
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HinfI	GANTC	3 cut(s)	180, 299, 622
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	6 cut(s)	60, 519, 627, 819, 925, 975
Hpy188III	TCNNGA	5 cut(s)	211, 305, 425, 450, 581
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	5 cut(s)	584, 728, 920, 934, 978
HpyCH4III	ACNGT	4 cut(s)	484, 500, 700, 873
HpyCH4V	TGCA	5 cut(s)	20, 110, 155, 251, 275
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 98, 107, 116, 161, 170, 272, 365, 809
HpyF3I	CTNAG	2 cut(s)	59, 754
Hsp92II	CATG	5 cut(s)	51, 163, 238, 373, 448
HspAI	GCGC	1 cut(s)	674
Kzo9I	GATC	5 cut(s)	64, 427, 603, 684, 737
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	71, 520
Lsp1109I	GCAGC	4 cut(s)	32, 157, 176, 868
LweI	GCATC	3 cut(s)	83, 88, 767
MaeI	CTAG	3 cut(s)	323, 377, 786
MalI	GATC	5 cut(s)	66, 429, 605, 686, 739
MboI	GATC	5 cut(s)	64, 427, 603, 684, 737
MboII	GAAGA	6 cut(s)	23, 47, 388, 569, 961, 978
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	276, 317, 438, 910
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	4 cut(s)	36, 194, 681, 1009
MspA1I	CMGCKG	2 cut(s)	167, 556
MspR9I	CCNGG	1 cut(s)	851
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	851
MwoI	GCNNNNNNNGC	9 cut(s)	26, 98, 107, 116, 161, 170, 272, 365, 809
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	5 cut(s)	64, 427, 603, 684, 737
NlaIII	CATG	5 cut(s)	51, 163, 238, 373, 448
NlaIV	GGNNCC	1 cut(s)	813
NsbI	TGCGCA	1 cut(s)	675
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	2 cut(s)	51, 448
PaeI	GCATGC	1 cut(s)	51
PaeR7I	CTCGAG	4 cut(s)	24, 450, 723, 844
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	180, 299, 622
PkrI	GCNGC	6 cut(s)	22, 166, 169, 172, 225, 883
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	2 cut(s)	373, 811
PspXI	VCTCGAGB	3 cut(s)	24, 723, 844
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	2 cut(s)	489, 702
RsaNI	GTAC	2 cut(s)	488, 701
SacI	GAGCTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	36, 194, 681, 1009
SatI	GCNGC	6 cut(s)	21, 165, 168, 171, 224, 882
Sau3AI	GATC	5 cut(s)	64, 427, 603, 684, 737
Sau96I	GGNCC	2 cut(s)	373, 811
ScaI	AGTACT	1 cut(s)	702
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	3 cut(s)	83, 88, 767
SfcI	CTRYAG	1 cut(s)	961
Sfr274I	CTCGAG	4 cut(s)	24, 450, 723, 844
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	4 cut(s)	24, 450, 723, 844
SmlI	CTYRAG	4 cut(s)	24, 450, 723, 844
SmoI	CTYRAG	4 cut(s)	24, 450, 723, 844
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	4 cut(s)	276, 317, 438, 910
SsiI	CCGC	2 cut(s)	167, 224
SspMI	CTAG	3 cut(s)	323, 377, 786
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	4 cut(s)	484, 500, 700, 873
TaqI	TCGA	7 cut(s)	25, 426, 451, 724, 779, 845, 994
TasI	AATT	4 cut(s)	276, 317, 438, 910
TatI	WGTACW	2 cut(s)	487, 700
TauI	GCSGC	2 cut(s)	170, 226
TfiI	GAWTC	3 cut(s)	180, 299, 622
Tru1I	TTAA	4 cut(s)	36, 194, 681, 1009
Tru9I	TTAA	4 cut(s)	36, 194, 681, 1009
TscAI	CASTG	3 cut(s)	12, 487, 747
TseI	GCWGC	4 cut(s)	20, 164, 170, 881
TspDTI	ATGAA	3 cut(s)	148, 230, 896
TspRI	CASTG	3 cut(s)	12, 487, 747
VpaK11BI	GGWCC	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	819
XceI	RCATGY	2 cut(s)	51, 448
XhoI	CTCGAG	4 cut(s)	24, 450, 723, 844
XmiI	GTMKAC	1 cut(s)	418
XspI	CTAG	3 cut(s)	323, 377, 786
ZrmI	AGTACT	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.