Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0016517

Physical Location & Seq

Genomic Coordinates Forward (+)

16973155 .. 16974208

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTGCATGACTTTGCGATAACCCAAAATTATGTGGTGATTCCGGATCAGCAAGTGGTATTTAAGTTATCCAAAATGATTAAGGGCGGTGGGCCTGTGATCTACGACCGGAGCAAGACGTCCCGGTTTGGAATTTTACCAAAAGGGCACGTGGACGAATCGGGCATCTGCTGGATTGACGTGCGCGATTGTTTTTGCTTCCATTTGTGCAATTCATGGGAAGAGATTTCGGACGCGGGTGACCCGACTGTTGTTGTCATTGGGTCATGCATGGACCCACCGGATTCAATATTCAACGAGCAAGGGAATAACCCAATTCGTGCTGAGTTGACAGAGATCCGGATGAACTTGAGGACTCGTGAGTCAACCCGGCGGGTTCTCGTCCCGAGTTTGAATTTGGAAGTAGGACAGGTGAACAAACAAGTGGTAGGACAAAAGAGCAAGTATGTGTACATGGCTATAGCTGAGCCGTGGCCCAAGTGTTCGGGTATTGCTAAGGTGGATTTGGAAACCGGTTCGGTGAGTAAGTATATGTATGGGTCCGGTCGGTTTGGCGGAGAACCGCTGTACGTGCCCCGACAGAGAAATGGTAGCATGGCACACCACGGTGAAGACGATGACGAAGGGTTTATAATGGGGTTTGTCAGGGATGAAGTTGAGGAGAGTTCCGAGTTGGTGATATTGGAAGCTTCAAGCATGAAACAAGTAGCGTTGGTGAGATTGCCTGCTAGGGTTCCGTATGGATTCCATGGTACATTTGTTAGTGAACAAGATTTGAAGCTGCAAATATATAAGTGTGTGTGTCTGTTAATAGACCCTATTTCTATTAGAGAGACAATACAAATATCACGAGCCTGTTTATTTTTGTCATTTGTTAATTATTTTTTGGTTTATTCGATCAAGTGTTTAGAATTAAACAAAAGGATATTAGATTGTCTAAACGTACCAATACGACTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

321

Amino Acids

36.07

Weight (kDa)

5.93

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	1 - 255	6.6e-65	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24220
fragaria_vesca	FvH4_4g05900
malus_domestica	MD16G1235500.v1.1
prunus_persica	Prupe.1G061300_v2.0.a1
pyrus_communis	pycom16g19710
rosa_chinensis	RchiOBHm_Chr4g0397001
rosa_laevigata	RLG00000009460
rosa_multiflora	Rmu_sc0002963.1_g000015
rosa_roxburghii	Rroxscaffold_5G00341990
rosa_rugosa	Rorug03G0345900
rosa_samantha	Rh4BG072400 Rh4CG080700 Rh4DG069800
rosa_wichuraiana	Rw4G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AasI	GACNNNNNNGTC	1 cut(s)	361
AatII	GACGTC	1 cut(s)	122
AccII	CGCG	2 cut(s)	186, 236
AccIII	TCCGGA	2 cut(s)	43, 339
AciI	CCGC	5 cut(s)	87, 236, 373, 555, 563
AclWI	GGATC	2 cut(s)	54, 331
AcsI	RAATTY	2 cut(s)	132, 394
AcvI	CACGTG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	4 cut(s)	452, 569, 754, 945
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	5 cut(s)	288, 295, 394, 693, 778
AjiI	CACGTC	1 cut(s)	181
AleI	CACNNNNGTG	1 cut(s)	606
AluBI	AGCT	3 cut(s)	464, 689, 781
AluI	AGCT	3 cut(s)	464, 689, 781
Alw26I	GTCTC	1 cut(s)	827
AlwI	GGATC	2 cut(s)	54, 331
Ama87I	CYCGRG	1 cut(s)	385
Aor13HI	TCCGGA	2 cut(s)	43, 339
AoxI	GGCC	2 cut(s)	92, 473
ApeKI	GCWGC	1 cut(s)	781
ApoI	RAATTY	2 cut(s)	132, 394
AsiGI	ACCGGT	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	4 cut(s)	92, 274, 474, 540
AsuC2I	CCSGG	2 cut(s)	124, 370
AsuHPI	GGTGA	7 cut(s)	49, 251, 424, 532, 620, 688, 727
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	274, 540
BaeGI	GKGCMC	2 cut(s)	150, 576
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BauI	CACGAG	2 cut(s)	357, 849
BbrPI	CACGTG	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	768
BceAI	ACGGC	1 cut(s)	454
BcnI	CCSGG	2 cut(s)	124, 370
BcoDI	GTCTC	1 cut(s)	827
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	782
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	783
Bme1390I	CCNGG	2 cut(s)	124, 370
Bme18I	GGWCC	2 cut(s)	274, 540
BmeT110I	CYCGRG	1 cut(s)	385
BmgBI	CACGTC	1 cut(s)	181
BmgT120I	GGNCC	4 cut(s)	92, 274, 474, 540
BmiI	GGNNCC	3 cut(s)	276, 541, 735
BmrFI	CCNGG	2 cut(s)	124, 370
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	2 cut(s)	124, 370
BsaAI	YACGTR	2 cut(s)	151, 571
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	470, 604, 748
BsaWI	WCCGGW	6 cut(s)	43, 108, 280, 339, 512, 542
Bse118I	RCCGGY	1 cut(s)	512
BseAI	TCCGGA	2 cut(s)	43, 339
BseDI	CCNNGG	3 cut(s)	470, 604, 748
BseGI	GGATG	2 cut(s)	348, 655
BseMII	CTCAG	2 cut(s)	315, 456
BseRI	GAGGAG	1 cut(s)	674
BseSI	GKGCMC	2 cut(s)	150, 576
BseXI	GCAGC	1 cut(s)	768
Bsh1236I	CGCG	2 cut(s)	186, 236
Bsh1285I	CGRYCG	2 cut(s)	109, 547
BshFI	GGCC	2 cut(s)	94, 475
BshTI	ACCGGT	1 cut(s)	512
BsiEI	CGRYCG	2 cut(s)	109, 547
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	8 cut(s)	44, 109, 124, 281, 340, 370, 513, 543
BslFI	GGGAC	2 cut(s)	106, 368
BsmAI	GTCTC	1 cut(s)	827
BsmFI	GGGAC	2 cut(s)	106, 368
BsnI	GGCC	2 cut(s)	94, 475
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	150, 576
Bsp13I	TCCGGA	2 cut(s)	43, 339
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	46, 99, 336, 897
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	748
BspACI	CCGC	5 cut(s)	87, 236, 373, 555, 563
BspANI	GGCC	2 cut(s)	94, 475
BspCNI	CTCAG	2 cut(s)	316, 457
BspEI	TCCGGA	2 cut(s)	43, 339
BspFNI	CGCG	2 cut(s)	186, 236
BspLI	GGNNCC	3 cut(s)	276, 541, 735
BspPI	GGATC	2 cut(s)	54, 331
BsrFI	RCCGGY	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	470, 604, 748
BssMI	GATC	4 cut(s)	46, 99, 336, 897
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	2 cut(s)	357, 849
BssT1I	CCWWGG	1 cut(s)	748
Bst2BI	CACGAG	2 cut(s)	357, 849
Bst4CI	ACNGT	2 cut(s)	250, 608
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	450
BstBAI	YACGTR	2 cut(s)	151, 571
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	3 cut(s)	324, 465, 495
BstDSI	CCRYGG	3 cut(s)	470, 604, 748
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	348, 655
BstFNI	CGCG	2 cut(s)	186, 236
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	4 cut(s)	49, 102, 339, 900
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	4 cut(s)	46, 99, 336, 897
BstMCI	CGRYCG	2 cut(s)	109, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	122, 368
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	2 cut(s)	150, 576
BstUI	CGCG	2 cut(s)	186, 236
BstV1I	GCAGC	1 cut(s)	768
BstV2I	GAAGAC	1 cut(s)	618
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	94, 475
BtgI	CCRYGG	3 cut(s)	470, 604, 748
BtrI	CACGTC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	348, 655
Cac8I	GCNNGC	1 cut(s)	726
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	4 cut(s)	92, 274, 474, 540
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	4 cut(s)	451, 568, 753, 944
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	8 cut(s)	8, 216, 267, 271, 454, 595, 697, 749
CviJI	RGCY	8 cut(s)	94, 458, 464, 469, 475, 689, 781, 854
CviKI_1	RGCY	8 cut(s)	94, 458, 464, 469, 475, 689, 781, 854
CviQI	GTAC	4 cut(s)	451, 568, 753, 944
DdeI	CTNAG	3 cut(s)	324, 465, 495
DpnI	GATC	4 cut(s)	48, 101, 338, 899
DpnII	GATC	4 cut(s)	46, 99, 336, 897
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	274, 540
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	748
EcoT22I	ATGCAT	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	8 cut(s)	11, 219, 270, 274, 457, 598, 700, 752
FaqI	GGGAC	2 cut(s)	106, 368
FatI	CATG	8 cut(s)	7, 215, 266, 270, 453, 594, 696, 748
FauI	CCCGC	2 cut(s)	229, 366
Fnu4HI	GCNGC	1 cut(s)	782
FokI	GGATG	2 cut(s)	355, 662
Fsp4HI	GCNGC	1 cut(s)	782
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	94, 475
HapII	CCGG	8 cut(s)	44, 109, 124, 281, 340, 370, 513, 543
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	8 cut(s)	11, 219, 270, 274, 457, 598, 700, 752
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	2 cut(s)	330, 366
HindII	GTYRAC	2 cut(s)	330, 366
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	6 cut(s)	40, 158, 284, 355, 362, 744
HpaII	CCGG	8 cut(s)	44, 109, 124, 281, 340, 370, 513, 543
HphI	GGTGA	7 cut(s)	49, 251, 424, 532, 620, 688, 727
Hpy166II	GTNNAC	6 cut(s)	154, 330, 366, 415, 451, 767
Hpy188I	TCNGA	2 cut(s)	232, 670
Hpy188III	TCNNGA	5 cut(s)	44, 340, 359, 385, 849
Hpy8I	GTNNAC	6 cut(s)	154, 330, 366, 415, 451, 767
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	250, 608
HpyCH4IV	ACGT	5 cut(s)	119, 150, 180, 570, 942
HpyCH4V	TGCA	4 cut(s)	7, 210, 270, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	3 cut(s)	324, 465, 495
HpySE526I	ACGT	5 cut(s)	119, 150, 180, 570, 942
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	8 cut(s)	11, 219, 270, 274, 457, 598, 700, 752
HspAI	GCGC	1 cut(s)	184
Kpn2I	TCCGGA	2 cut(s)	43, 339
Kzo9I	GATC	4 cut(s)	46, 99, 336, 897
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	768
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	5 cut(s)	119, 150, 180, 570, 942
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	4 cut(s)	48, 101, 338, 899
MboI	GATC	4 cut(s)	46, 99, 336, 897
MboII	GAAGA	2 cut(s)	233, 623
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	150, 576
MluCI	AATT	8 cut(s)	28, 132, 211, 315, 394, 877, 911, 958
MlyI	GAGTC	2 cut(s)	349, 371
MnlI	CCTC	2 cut(s)	345, 652
Mph1103I	ATGCAT	1 cut(s)	272
MroI	TCCGGA	2 cut(s)	43, 339
MseI	TTAA	7 cut(s)	63, 81, 809, 876, 914, 957, 961
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	8 cut(s)	44, 109, 124, 281, 340, 370, 513, 543
MspR9I	CCNGG	2 cut(s)	124, 370
MvnI	CGCG	2 cut(s)	186, 236
MwoI	GCNNNNNNNGC	1 cut(s)	571
NciI	CCSGG	2 cut(s)	124, 370
NcoI	CCATGG	1 cut(s)	748
NdeII	GATC	4 cut(s)	46, 99, 336, 897
NlaIII	CATG	8 cut(s)	11, 219, 270, 274, 457, 598, 700, 752
NlaIV	GGNNCC	3 cut(s)	276, 541, 735
NmuCI	GTSAC	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	606
PacI	TTAATTAA	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	612
PfeI	GAWTC	4 cut(s)	40, 158, 284, 744
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	783
PleI	GAGTC	2 cut(s)	349, 370
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	2 cut(s)	349, 370
Ppu21I	YACGTR	2 cut(s)	151, 571
PsiI	TTATAA	1 cut(s)	632
PspCI	CACGTG	1 cut(s)	151
PspEI	GGTNACC	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	276, 541, 735
PspPI	GGNCC	4 cut(s)	92, 274, 474, 540
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	4 cut(s)	452, 569, 754, 945
RsaNI	GTAC	4 cut(s)	451, 568, 753, 944
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	7 cut(s)	63, 81, 809, 876, 914, 957, 961
SatI	GCNGC	1 cut(s)	782
Sau3AI	GATC	4 cut(s)	46, 99, 336, 897
Sau96I	GGNCC	4 cut(s)	92, 274, 474, 540
SchI	GAGTC	2 cut(s)	349, 371
ScrFI	CCNGG	2 cut(s)	124, 370
SduI	GDGCHC	2 cut(s)	150, 576
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	2 cut(s)	274, 540
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	8 cut(s)	28, 132, 211, 315, 394, 877, 911, 958
SsiI	CCGC	5 cut(s)	87, 236, 373, 555, 563
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	2 cut(s)	122, 368
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	2 cut(s)	250, 608
TaiI	ACGT	5 cut(s)	122, 153, 183, 573, 945
TaqI	TCGA	1 cut(s)	896
TasI	AATT	8 cut(s)	28, 132, 211, 315, 394, 877, 911, 958
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	4 cut(s)	40, 158, 284, 744
Tru1I	TTAA	7 cut(s)	63, 81, 809, 876, 914, 957, 961
Tru9I	TTAA	7 cut(s)	63, 81, 809, 876, 914, 957, 961
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	781
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	204, 359, 666, 713
TspGWI	ACGGA	1 cut(s)	726
VpaK11BI	GGWCC	2 cut(s)	274, 540
XapI	RAATTY	2 cut(s)	132, 394
XspI	CTAG	1 cut(s)	729
ZraI	GACGTC	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.