Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016517

Physical Location & Seq

Genomic Coordinates Reverse (-)

41836906 .. 41838977

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0345900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCTGAGCTTCGTCTCCGGAAGATGGAAGACATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTACTGCCAAATCCAAAGATGACGAGGCTGCTTGAGACGGAGACGAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGGTACCGAATAATTGAATCAATGCTTGATTCGATTCGATTTGAGATTGATGTTTCGTTGCATCTCCGAGAAAAGAATGAGTTTATTCCTTCTGATTTTTCCATTCGTTCTGATGGTCTTGATACTACATATACATCTTCTCCGAGATGTATACTTGATCAACCTTTGCTTAAGTTCTGGTACAAGCTTGATCGTACTTTTAAAGTTCCACGGGCAAATATATACTTTCGAATCAATCTAAAGGGTGGATTTGATAACTTGAAGAGTTCTCTGTTGACTGTACTATATATCGACCTTCTTAGAGATGAGCTGAATGAGATTTTATATCAGGCCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCTGGAACTAAAGCTGTGGGGCTTCAATGATAAGCTTCCAGCTGTATTGTCAACAATTCTGACAACAACCAAAAATTTCCTGCCAACTTATGATCGTTTCAAGAGATTCTACGATGTAGATGACCAGTTGCATGTTTTAAATGGATTGTCTGTTTCTGATGTGAAGTCATTTATTCTAGAGCTTTGGTCCCAGCTTTACATTGAAGGCCTTGGTCATGGAAATCTGTTAGAAGAAGAAGCAATTAGCCTTTTGAATATGGTGAAAACAATTTTTTCTGGACAACCACTTCCTACCGAACTGATGCTTAAGAACAATTGTAGTTGTCTCGCTCCTGATGCTAACCTCATTAGAGATGTCAGTGTAAGTATAAGACTGAAACAAACTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

318

Amino Acids

36.71

Weight (kDa)

7.61

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_M	PF16187	69 - 227	1.2e-42	Middle or third domain of peptidase_M16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24220
fragaria_vesca	FvH4_4g05900
malus_domestica	MD16G1235500.v1.1
prunus_persica	Prupe.1G061300_v2.0.a1
pyrus_communis	pycom16g19710
rosa_chinensis	RchiOBHm_Chr4g0397001
rosa_laevigata	RLG00000009460
rosa_multiflora	Rmu_sc0002963.1_g000015
rosa_roxburghii	Rroxscaffold_5G00341990
rosa_rugosa	Rorug03G0345900
rosa_samantha	Rh4BG072400 Rh4CG080700 Rh4DG069800
rosa_wichuraiana	Rw4G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	192
AccB1I	GGYRCC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	2 cut(s)	99, 101
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	640
AfaI	GTAC	5 cut(s)	114, 194, 371, 385, 471
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AflII	CTTAAG	2 cut(s)	359, 872
AgsI	TTSAA	7 cut(s)	59, 206, 451, 592, 667, 770, 820
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	8 cut(s)	9, 376, 499, 580, 601, 608, 748, 760
AluI	AGCT	8 cut(s)	9, 376, 499, 580, 601, 608, 748, 760
Alw26I	GTCTC	4 cut(s)	19, 140, 146, 896
AlwNI	CAGNNNCTG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	3 cut(s)	185, 519, 772
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	640
Asp718I	GGTACC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	753
AsuHPI	GGTGA	2 cut(s)	27, 838
AsuII	TTCGAA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	18, 296
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	4 cut(s)	19, 140, 146, 896
BfaI	CTAG	1 cut(s)	743
BfrI	CTTAAG	2 cut(s)	359, 872
BfuI	GTATCC	1 cut(s)	532
BisI	GCNGC	2 cut(s)	102, 140
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	103, 141
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	753
BmgBI	CACGTC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	194, 755
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	259, 858, 892
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	35
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	99, 188, 398, 775
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	3 cut(s)	161, 522, 691
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	4 cut(s)	99, 188, 398, 775
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseNI	ACTGG	3 cut(s)	161, 522, 691
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	3 cut(s)	187, 521, 774
BshNI	GGYRCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	4 cut(s)	19, 140, 146, 896
BsmBI	CGTCTC	3 cut(s)	19, 140, 146
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	3 cut(s)	187, 521, 774
Bsp119I	TTCGAA	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	346, 379, 658
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	99, 101
BspANI	GGCC	3 cut(s)	187, 521, 774
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	194, 755
BspT104I	TTCGAA	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	192
BspTI	CTTAAG	2 cut(s)	359, 872
BsrI	ACTGG	3 cut(s)	161, 522, 691
BssECI	CCNNGG	4 cut(s)	99, 188, 398, 775
BssMI	GATC	3 cut(s)	346, 379, 658
BssNAI	GTATAC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	775
Bst1107I	GTATAC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	446
BstAFI	CTTAAG	2 cut(s)	359, 872
BstBI	TTCGAA	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	5, 44, 488
BstDSI	CCRYGG	2 cut(s)	99, 398
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	349, 382, 661
BstMAI	GTCTC	4 cut(s)	19, 140, 146, 896
BstMBI	GATC	3 cut(s)	346, 379, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 902
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	178, 701
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	126
BstV2I	GAAGAC	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	187, 521, 774
BtgI	CCRYGG	2 cut(s)	99, 398
BtrI	CACGTC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	931
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	753
Cfr42I	CCGCGG	1 cut(s)	102
Csp6I	GTAC	5 cut(s)	113, 193, 370, 384, 470
CviAII	CATG	3 cut(s)	175, 698, 782
CviQI	GTAC	5 cut(s)	113, 193, 370, 384, 470
DdeI	CTNAG	3 cut(s)	5, 44, 488
DpnI	GATC	3 cut(s)	348, 381, 660
DpnII	GATC	3 cut(s)	346, 379, 658
DraI	TTTAAA	2 cut(s)	391, 705
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	775
Eco147I	AGGCCT	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	775
Esp3I	CGTCTC	3 cut(s)	19, 140, 146
FaeI	CATG	3 cut(s)	178, 701, 785
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	3 cut(s)	174, 697, 781
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	2 cut(s)	102, 140
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	102, 140
FspBI	CTAG	1 cut(s)	743
GluI	GCNGC	2 cut(s)	102, 140
GsaI	CCCAGC	1 cut(s)	760
HaeIII	GGCC	3 cut(s)	187, 521, 774
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	3 cut(s)	178, 701, 785
HincII	GTYRAC	2 cut(s)	465, 618
HindII	GTYRAC	2 cut(s)	465, 618
HindIII	AAGCTT	2 cut(s)	374, 599
HinfI	GANTC	6 cut(s)	40, 206, 218, 223, 420, 672
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	27, 838
Hpy166II	GTNNAC	4 cut(s)	180, 341, 465, 618
Hpy188I	TCNGA	6 cut(s)	257, 283, 301, 333, 627, 724
Hpy188III	TCNNGA	7 cut(s)	18, 308, 569, 667, 743, 843, 899
Hpy8I	GTNNAC	4 cut(s)	180, 341, 465, 618
HpyAV	CCTTC	3 cut(s)	288, 494, 764
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	93, 250, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 902
HpyF3I	CTNAG	3 cut(s)	5, 44, 488
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	178, 701, 785
Kpn2I	TCCGGA	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	346, 379, 658
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	3 cut(s)	259, 858, 892
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	1 cut(s)	182
MalI	GATC	3 cut(s)	348, 381, 660
MboI	GATC	3 cut(s)	346, 379, 658
MboII	GAAGA	8 cut(s)	33, 40, 44, 47, 318, 463, 809, 812
MfeI	CAATTG	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	8 cut(s)	86, 201, 559, 621, 640, 807, 834, 880
MnlI	CCTC	4 cut(s)	73, 129, 183, 920
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	4 cut(s)	360, 390, 704, 873
MspA1I	CMGCKG	2 cut(s)	101, 608
MspCI	CTTAAG	2 cut(s)	359, 872
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	880
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	527, 902
NdeII	GATC	3 cut(s)	346, 379, 658
NlaIII	CATG	3 cut(s)	178, 701, 785
NlaIV	GGNNCC	2 cut(s)	194, 755
NmeAIII	GCCGAG	1 cut(s)	213
NspI	RCATGY	2 cut(s)	178, 701
NspV	TTCGAA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	774
PfeI	GAWTC	6 cut(s)	40, 206, 218, 223, 420, 672
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	103, 141
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	194, 755
PspPI	GGNCC	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	5 cut(s)	114, 194, 371, 385, 471
RsaNI	GTAC	5 cut(s)	113, 193, 370, 384, 470
SacII	CCGCGG	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	360, 390, 704, 873
SatI	GCNGC	2 cut(s)	102, 140
Sau3AI	GATC	3 cut(s)	346, 379, 658
Sau96I	GGNCC	1 cut(s)	753
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	3 cut(s)	259, 858, 892
Sfr303I	CCGCGG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	418
SgrBI	CCGCGG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	753
SmlI	CTYRAG	3 cut(s)	143, 359, 872
SmoI	CTYRAG	3 cut(s)	143, 359, 872
Sse9I	AATT	8 cut(s)	86, 201, 559, 621, 640, 807, 834, 880
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	2 cut(s)	99, 101
SspMI	CTAG	1 cut(s)	743
StuI	AGGCCT	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	4 cut(s)	221, 226, 418, 480
TasI	AATT	8 cut(s)	86, 201, 559, 621, 640, 807, 834, 880
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	6 cut(s)	40, 206, 218, 223, 420, 672
Tru1I	TTAA	4 cut(s)	360, 390, 704, 873
Tru9I	TTAA	4 cut(s)	360, 390, 704, 873
TscAI	CASTG	1 cut(s)	931
TseI	GCWGC	1 cut(s)	139
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	931
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	2 cut(s)	359, 872
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	1 cut(s)	640
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	2 cut(s)	178, 701
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.