Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016517

Physical Location & Seq

Genomic Coordinates Forward (+)

53239957 .. 53242170

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009460

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGCATGACCAACCTAATCCTTGTAATCCTCAAACTCATCTCCTACGCGTCCACTTCTCCTCTTGCCAGCTGGAATTGCTCTGTGTACCCACTCAACACTTTCCACCTCCATTATATAACCACTACTCCACTCCACCATTCTCTTCACACCTCTCGATCCCATCTCTCCCTCTCTTTCAAGCTAGCTTTGTAGTTATGCATGCCTCTTTGTATTTCATCACTACTCCTCCACAGTCCTCTTCCACTCTTAAAACTCCAAGTAAAACGCACATACCCACAACTCAAAGCGCAGCAGCATGCAAAATCATCATCAACCCAATGAGAAAAACACTACCTCGAGAAACCCATAAACCATTGAAACCACCTTTGCCACTACCAAAACCTAAACCCTTGGTCGAGCCCGTGCCTGAAGTAGTCGACCCGACCAAACCCTATTTCCCTTCTCACTTAAACCCACTTCAAAAACTAGCAGCCTCAGTATTAGACAAACTAGAAGCCGTGGTAATAGAGCCTCTAGACAAGAAGCAAAAATTGCCCAAGACTATCGACCCGGCGGTTCAGATATCCGGCAACTTCGCGCCGGTTCGGGAGTGTCCAGTTCAGCACGGGCTTGAAGTACTAGGTCAAATCCCGGATTGTTTACGTGGCGTTTATGTCCGTAACGGCGCTAATCCTATGTTTACGCCCTCGGGTGGTCATCACTTGTTTGATGGAGACGGTATGATCCACGCGCTCACTTTGGGCGTGGGTAACAAAGCTAGCTACTCTTGTAGGTACACCCGCACGAGCCGGCTCAAGCAAGAAACCAAGCTAGGGAGGCCGATGTTTCCGAAGCCGATAGGTGAGCTTCATGGGCACTCGGGTTTGGCTCGGCTAGGCTTGTTCTTGGCTCGAGCCGCAATCGGCTTGGTTGACTGCTCACAAGGCACCGGCGTGGCTAATGCCGGCTTGGTCTACTTCAACGGACGCTTATTAGCCATGTCCGAGGATGACCTCCCTTACAATGTTAAGATCAAAGGTGACGGTGATCTCGAAACGATCGGCCGGTTCAATTTCAACGGTGGTCTCAACCGGCCGATGATTGCGCATCCAAAGGTGGACCCGGGTACCGGTGATCTCCACGCGCTGAGCTATGACGTGGTCAACAAACCTCACCTTAAATACTACAAGTTTGACACGTGCGGGAGAAAGTCACGTGAGGTGGGAATCACCCTAGAGCAGCCTACTATGGTGCATGACTTTGCCATAACGGAGAACCATGCCGTGATCCCGGACCAGCAAGTTGTATTCAAGCTATCCGAAATGATGAAAGGTGGGTCGCCCGTAATCTATGACCCGAAAAAGATGTCTCGCTTTGGAATTTTGCCCAAGAATGATGAAGAGGGGTTGGGGATTCAATGGATCAACGTACCCGATTGCTTTTGTTTCCATTTGTGCAATGCATGGGAGGAAACTTCGGACTCGGGTGACCCGATCATCGTTGTCATTGGTTCCTGCATGAATCCGCCTGACTCGGTTTTTAACGAGCACAATACTGACCCACTGCGCATTGAATTATCCGAAATCCGGATGAACATGAGGTCCGGAGAATCGAGTCGTCGGGTCATTGTCTCGGGTTTAAATTTAGAAGTGGGGGTGGTGAACAAGCAGCTCCTAGGGCAAAAGACTAGATATTTGTACATGGCTATAGCGGAGCCATGGCCCAAGTGTTCGGGCATCGCTAAGGTGGATGTGGAAACCGGTTTGGTGACCAAGTATATGTACGGGACCGGCCGGTTCGGAGGTGAGCCTTTTTACGTACCCGAATTGAGAAGTGGAAGCGTGGGAGACAATGGAGTTGTACAAGGGGGTGATGATGATGAGGGATATGTAATGGGTTTTGTGAGGGATGAGAGGGAGGAGAAATCAGAAATGGTGATCTTGGATGCTTCAAGCATGAAGCAAGTGGGTTCCGTGAGATTGCCTGCTAGAGTTCCTTATGGATTCCACGGTACATTTATTAGTGAACAAGATTTGAAGGAGCAGGCTTTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

679

Amino Acids

74.71

Weight (kDa)

7.1

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	192 - 668	5.2e-127	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24220
fragaria_vesca	FvH4_4g05900
malus_domestica	MD16G1235500.v1.1
prunus_persica	Prupe.1G061300_v2.0.a1
pyrus_communis	pycom16g19710
rosa_chinensis	RchiOBHm_Chr4g0397001
rosa_laevigata	RLG00000009460
rosa_multiflora	Rmu_sc0002963.1_g000015
rosa_roxburghii	Rroxscaffold_5G00341990
rosa_rugosa	Rorug03G0345900
rosa_samantha	Rh4BG072400 Rh4CG080700 Rh4DG069800
rosa_wichuraiana	Rw4G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1086, 1547
Acc65I	GGTACC	1 cut(s)	1106
AccB1I	GGYRCC	2 cut(s)	926, 1106
AccI	GTMKAC	2 cut(s)	417, 954
AccII	CGCG	4 cut(s)	48, 578, 731, 1124
AccIII	TCCGGA	2 cut(s)	1566, 1583
AciI	CCGC	6 cut(s)	554, 781, 897, 1182, 1505, 1691
AclWI	GGATC	4 cut(s)	151, 718, 1261, 1409
AcoI	YGGCCR	3 cut(s)	1042, 1073, 1771
AcsI	RAATTY	2 cut(s)	1359, 1621
AcuI	CTGAAG	1 cut(s)	429
AcvI	CACGTG	2 cut(s)	1179, 1196
AfiI	CCNNNNNNNGG	4 cut(s)	692, 813, 1109, 1566
AflIII	ACRYGT	2 cut(s)	46, 1176
AgeI	ACCGGT	2 cut(s)	1109, 1739
AjiI	CACGTC	1 cut(s)	1138
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AleI	CACNNNNGTG	1 cut(s)	932
AloI	GAACNNNNNNTCC	2 cut(s)	1565, 1597
Alw21I	GWGCWC	1 cut(s)	1530
Alw26I	GTCTC	5 cut(s)	708, 1070, 1353, 1615, 1821
AlwI	GGATC	4 cut(s)	151, 718, 1261, 1409
Ama87I	CYCGRG	7 cut(s)	336, 688, 859, 891, 1102, 1462, 1612
Aor13HI	TCCGGA	2 cut(s)	1566, 1583
AoxI	GGCC	5 cut(s)	818, 1042, 1073, 1700, 1771
ApeKI	GCWGC	5 cut(s)	290, 293, 470, 1219, 1648
ApoI	RAATTY	2 cut(s)	1359, 1621
ArsI	GACNNNNNNTTYG	4 cut(s)	1331, 1363, 1657, 1689
AsiGI	ACCGGT	2 cut(s)	1109, 1739
Asp718I	GGTACC	1 cut(s)	1106
AspA2I	CCTAGG	1 cut(s)	1654
AspLEI	GCGC	7 cut(s)	290, 580, 668, 733, 1087, 1126, 1548
AspS9I	GGNCC	5 cut(s)	1099, 1273, 1581, 1701, 1767
AsuC2I	CCSGG	5 cut(s)	551, 632, 1103, 1104, 1271
AsuNHI	GCTAGC	2 cut(s)	182, 758
AvaI	CYCGRG	7 cut(s)	336, 688, 859, 891, 1102, 1462, 1612
AvaII	GGWCC	4 cut(s)	1099, 1273, 1581, 1767
AvrII	CCTAGG	1 cut(s)	1654
BaeGI	GKGCMC	1 cut(s)	858
BaeI	ACNNNNGTAYC	2 cut(s)	1090, 1123
BanI	GGYRCC	2 cut(s)	926, 1106
BanII	GRGCYC	1 cut(s)	402
BauI	CACGAG	1 cut(s)	784
BbrPI	CACGTG	2 cut(s)	1179, 1196
Bbv12I	GWGCWC	1 cut(s)	1530
BbvI	GCAGC	5 cut(s)	302, 305, 482, 1231, 1660
BccI	CCATC	2 cut(s)	169, 704
BceAI	ACGGC	3 cut(s)	482, 679, 1247
BcnI	CCSGG	5 cut(s)	551, 632, 1103, 1104, 1271
BcoDI	GTCTC	5 cut(s)	708, 1070, 1353, 1615, 1821
BfmI	CTRYAG	1 cut(s)	1686
BfoI	RGCGCY	1 cut(s)	669
BisI	GCNGC	6 cut(s)	291, 294, 471, 897, 1220, 1649
BlnI	CCTAGG	1 cut(s)	1654
BlpI	GCTNAGC	1 cut(s)	1127
BlsI	GCNGC	6 cut(s)	292, 295, 472, 898, 1221, 1650
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	5 cut(s)	551, 632, 1103, 1104, 1271
Bme18I	GGWCC	4 cut(s)	1099, 1273, 1581, 1767
BmeT110I	CYCGRG	7 cut(s)	336, 688, 859, 891, 1102, 1462, 1612
BmgBI	CACGTC	1 cut(s)	1138
BmgT120I	GGNCC	5 cut(s)	1099, 1273, 1581, 1701, 1767
BmiI	GGNNCC	7 cut(s)	928, 1101, 1108, 1492, 1695, 1768, 1951
BmrFI	CCNGG	5 cut(s)	551, 632, 1103, 1104, 1271
BmsI	GCATC	3 cut(s)	1096, 1725, 1915
BmtI	GCTAGC	2 cut(s)	186, 762
Bpu10I	CCTNAGC	1 cut(s)	1722
Bpu1102I	GCTNAGC	1 cut(s)	1127
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	5 cut(s)	551, 632, 1103, 1104, 1271
BsaAI	YACGTR	4 cut(s)	644, 1179, 1196, 1798
BsaI	GGTCTC	1 cut(s)	1070
BsaJI	CCNNGG	8 cut(s)	390, 498, 687, 984, 1102, 1654, 1697, 1987
BsaWI	WCCGGW	4 cut(s)	1109, 1566, 1583, 1739
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 211, 241
Bsc4I	CCNNNNNNNGG	4 cut(s)	692, 813, 1109, 1566
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	1444
BseAI	TCCGGA	2 cut(s)	1566, 1583
BseDI	CCNNGG	8 cut(s)	390, 498, 687, 984, 1102, 1654, 1697, 1987
BseGI	GGATG	6 cut(s)	994, 1087, 1575, 1735, 1894, 1930
BseLI	CCNNNNNNNGG	4 cut(s)	692, 813, 1109, 1566
BseMI	GCAATG	1 cut(s)	1444
BseMII	CTCAG	2 cut(s)	489, 1118
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	3 cut(s)	49, 216, 1913
BseSI	GKGCMC	1 cut(s)	858
BseX3I	CGGCCG	3 cut(s)	1042, 1073, 1771
BseXI	GCAGC	5 cut(s)	302, 305, 482, 1231, 1660
Bsh1236I	CGCG	4 cut(s)	48, 578, 731, 1124
Bsh1285I	CGRYCG	4 cut(s)	1041, 1045, 1076, 1774
BshFI	GGCC	5 cut(s)	820, 1044, 1075, 1702, 1773
BshNI	GGYRCC	2 cut(s)	926, 1106
BshTI	ACCGGT	2 cut(s)	1109, 1739
BsiEI	CGRYCG	4 cut(s)	1041, 1045, 1076, 1774
BsiHKAI	GWGCWC	1 cut(s)	1530
BsiHKCI	CYCGRG	7 cut(s)	336, 688, 859, 891, 1102, 1462, 1612
BslFI	GGGAC	1 cut(s)	1780
BslI	CCNNNNNNNGG	4 cut(s)	692, 813, 1109, 1566
BsmAI	GTCTC	5 cut(s)	708, 1070, 1353, 1615, 1821
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	1780
BsnI	GGCC	5 cut(s)	820, 1044, 1075, 1702, 1773
Bso31I	GGTCTC	1 cut(s)	1070
BsoBI	CYCGRG	7 cut(s)	336, 688, 859, 891, 1102, 1462, 1612
Bsp1286I	GDGCHC	3 cut(s)	402, 858, 1530
Bsp13I	TCCGGA	2 cut(s)	1566, 1583
Bsp1407I	TGTACA	2 cut(s)	1677, 1840
Bsp1720I	GCTNAGC	1 cut(s)	1127
Bsp19I	CCATGG	1 cut(s)	1697
BspACI	CCGC	6 cut(s)	554, 781, 897, 1182, 1505, 1691
BspANI	GGCC	5 cut(s)	820, 1044, 1075, 1702, 1773
BspCNI	CTCAG	2 cut(s)	488, 1119
BspEI	TCCGGA	2 cut(s)	1566, 1583
BspFNI	CGCG	4 cut(s)	48, 578, 731, 1124
BspLI	GGNNCC	7 cut(s)	928, 1101, 1108, 1492, 1695, 1768, 1951
BspOI	GCTAGC	2 cut(s)	186, 762
BspPI	GGATC	4 cut(s)	151, 718, 1261, 1409
BspT107I	GGYRCC	2 cut(s)	926, 1106
BspTNI	GGTCTC	1 cut(s)	1070
BsrDI	GCAATG	1 cut(s)	1444
BsrGI	TGTACA	2 cut(s)	1677, 1840
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	8 cut(s)	390, 498, 687, 984, 1102, 1654, 1697, 1987
BssSI	CACGAG	1 cut(s)	784
BssT1I	CCWWGG	3 cut(s)	390, 1654, 1697
Bst2BI	CACGAG	1 cut(s)	784
Bst4CI	ACNGT	5 cut(s)	234, 719, 1025, 1061, 1991
Bst6I	CTCTTC	3 cut(s)	148, 244, 1374
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstAUI	TGTACA	2 cut(s)	1677, 1840
BstBAI	YACGTR	4 cut(s)	644, 1179, 1196, 1798
BstC8I	GCNNGC	9 cut(s)	68, 184, 201, 298, 760, 791, 946, 1965, 2025
BstDEI	CTNAG	3 cut(s)	475, 1127, 1722
BstDSI	CCRYGG	3 cut(s)	498, 1697, 1987
BstEII	GGTNACC	2 cut(s)	1466, 1747
BstF5I	GGATG	6 cut(s)	994, 1087, 1575, 1735, 1894, 1930
BstFNI	CGCG	4 cut(s)	48, 578, 731, 1124
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	7 cut(s)	290, 580, 668, 733, 1087, 1126, 1548
BstMAI	GTCTC	5 cut(s)	708, 1070, 1353, 1615, 1821
BstMCI	CGRYCG	4 cut(s)	1041, 1045, 1076, 1774
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 532, 817, 853, 896, 924, 1657
BstNSI	RCATGY	2 cut(s)	203, 300
BstPI	GGTNACC	2 cut(s)	1466, 1747
BstSCI	CCNGG	5 cut(s)	549, 630, 1101, 1102, 1269
BstSFI	CTRYAG	1 cut(s)	1686
BstSLI	GKGCMC	1 cut(s)	858
BstSNI	TACGTA	1 cut(s)	1798
BstUI	CGCG	4 cut(s)	48, 578, 731, 1124
BstV1I	GCAGC	5 cut(s)	302, 305, 482, 1231, 1660
BstZI	CGGCCG	3 cut(s)	1042, 1073, 1771
BsuRI	GGCC	5 cut(s)	820, 1044, 1075, 1702, 1773
BtgI	CCRYGG	3 cut(s)	498, 1697, 1987
BtgZI	GCGATG	1 cut(s)	1702
BtrI	CACGTC	1 cut(s)	1138
BtsCI	GGATG	6 cut(s)	994, 1087, 1575, 1735, 1894, 1930
BtsI	GCAGTG	1 cut(s)	1541
BtsIMutI	CAGTG	1 cut(s)	1541
Cac8I	GCNNGC	9 cut(s)	68, 184, 201, 298, 760, 791, 946, 1965, 2025
CfoI	GCGC	7 cut(s)	290, 580, 668, 733, 1087, 1126, 1548
Cfr13I	GGNCC	5 cut(s)	1099, 1273, 1581, 1701, 1767
Cfr9I	CCCGGG	1 cut(s)	1102
CseI	GACGC	2 cut(s)	37, 975
CspAI	ACCGGT	2 cut(s)	1109, 1739
DdeI	CTNAG	3 cut(s)	475, 1127, 1722
DraI	TTTAAA	1 cut(s)	1620
EaeI	YGGCCR	3 cut(s)	1042, 1073, 1771
EagI	CGGCCG	3 cut(s)	1042, 1073, 1771
Eam1104I	CTCTTC	3 cut(s)	148, 244, 1374
EarI	CTCTTC	3 cut(s)	148, 244, 1374
EciI	GGCGGA	1 cut(s)	1494
EclXI	CGGCCG	3 cut(s)	1042, 1073, 1771
Eco105I	TACGTA	1 cut(s)	1798
Eco130I	CCWWGG	3 cut(s)	390, 1654, 1697
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	1070
Eco32I	GATATC	1 cut(s)	564
Eco47I	GGWCC	4 cut(s)	1099, 1273, 1581, 1767
Eco52I	CGGCCG	3 cut(s)	1042, 1073, 1771
Eco57I	CTGAAG	1 cut(s)	429
Eco72I	CACGTG	2 cut(s)	1179, 1196
Eco88I	CYCGRG	7 cut(s)	336, 688, 859, 891, 1102, 1462, 1612
Eco91I	GGTNACC	2 cut(s)	1466, 1747
EcoO65I	GGTNACC	2 cut(s)	1466, 1747
EcoRV	GATATC	1 cut(s)	564
EcoT14I	CCWWGG	3 cut(s)	390, 1654, 1697
EcoT22I	ATGCAT	3 cut(s)	6, 201, 1444
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	3 cut(s)	390, 1654, 1697
Esp3I	CGTCTC	1 cut(s)	708
FaqI	GGGAC	1 cut(s)	1780
FauI	CCCGC	2 cut(s)	788, 1175
FblI	GTMKAC	2 cut(s)	417, 954
Fnu4HI	GCNGC	6 cut(s)	291, 294, 471, 897, 1220, 1649
FokI	GGATG	6 cut(s)	1001, 1074, 1582, 1742, 1901, 1937
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	6 cut(s)	291, 294, 471, 897, 1220, 1649
FspI	TGCGCA	2 cut(s)	1086, 1547
GlaI	GCGC	7 cut(s)	289, 579, 667, 732, 1086, 1125, 1547
GluI	GCNGC	6 cut(s)	291, 294, 471, 897, 1220, 1649
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	5 cut(s)	820, 1044, 1075, 1702, 1773
HgaI	GACGC	2 cut(s)	37, 975
HhaI	GCGC	7 cut(s)	290, 580, 668, 733, 1087, 1126, 1548
Hin6I	GCGC	7 cut(s)	288, 578, 666, 731, 1085, 1124, 1546
HinP1I	GCGC	7 cut(s)	288, 578, 666, 731, 1085, 1124, 1546
HincII	GTYRAC	3 cut(s)	418, 913, 1144
HindII	GTYRAC	3 cut(s)	418, 913, 1144
HinfI	GANTC	8 cut(s)	1206, 1393, 1460, 1501, 1511, 1589, 1594, 1983
Hpy188I	TCNGA	8 cut(s)	561, 831, 985, 1300, 1459, 1561, 1781, 1909
Hpy188III	TCNNGA	7 cut(s)	154, 338, 515, 587, 1031, 1567, 1584
Hpy99I	CGWCG	1 cut(s)	1602
HpyAV	CCTTC	2 cut(s)	450, 2011
HpyCH4III	ACNGT	5 cut(s)	234, 719, 1025, 1061, 1991
HpyCH4IV	ACGT	6 cut(s)	643, 1137, 1178, 1195, 1407, 1797
HpyCH4V	TGCA	7 cut(s)	4, 199, 300, 1234, 1437, 1442, 1497
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 532, 817, 853, 896, 924, 1657
HpyF3I	CTNAG	3 cut(s)	475, 1127, 1722
HpySE526I	ACGT	6 cut(s)	643, 1137, 1178, 1195, 1407, 1797
HspAI	GCGC	7 cut(s)	288, 578, 666, 731, 1085, 1124, 1546
Kpn2I	TCCGGA	2 cut(s)	1566, 1583
KpnI	GGTACC	1 cut(s)	1110
KroI	GCCGGC	2 cut(s)	789, 944
KroNI	GCCGGC	2 cut(s)	791, 946
LmnI	GCTCC	3 cut(s)	1656, 1693, 2020
Lsp1109I	GCAGC	5 cut(s)	302, 305, 482, 1231, 1660
LweI	GCATC	3 cut(s)	1096, 1725, 1915
MaeII	ACGT	6 cut(s)	643, 1137, 1178, 1195, 1407, 1797
MaeIII	GTNAC	6 cut(s)	659, 749, 1019, 1191, 1466, 1747
MboII	GAAGA	3 cut(s)	135, 231, 1391
MhlI	GDGCHC	3 cut(s)	402, 858, 1530
MluCI	AATT	7 cut(s)	74, 530, 1051, 1359, 1553, 1621, 1805
MluI	ACGCGT	1 cut(s)	46
MlyI	GAGTC	3 cut(s)	1454, 1505, 1603
Mph1103I	ATGCAT	3 cut(s)	6, 201, 1444
MroI	TCCGGA	2 cut(s)	1566, 1583
MroNI	GCCGGC	2 cut(s)	789, 944
MseI	TTAA	7 cut(s)	249, 449, 1008, 1158, 1521, 1619, 2035
MslI	CAYNNNNRTG	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	70
MspR9I	CCNGG	5 cut(s)	551, 632, 1103, 1104, 1271
MvnI	CGCG	4 cut(s)	48, 578, 731, 1124
MwoI	GCNNNNNNNGC	7 cut(s)	76, 532, 817, 853, 896, 924, 1657
NaeI	GCCGGC	2 cut(s)	791, 946
NciI	CCSGG	5 cut(s)	551, 632, 1103, 1104, 1271
NcoI	CCATGG	1 cut(s)	1697
NgoMIV	GCCGGC	2 cut(s)	789, 944
NheI	GCTAGC	2 cut(s)	182, 758
NlaIV	GGNNCC	7 cut(s)	928, 1101, 1108, 1492, 1695, 1768, 1951
NmeAIII	GCCGAG	1 cut(s)	850
NmuCI	GTSAC	4 cut(s)	1019, 1191, 1466, 1747
NsbI	TGCGCA	2 cut(s)	1086, 1547
NsiI	ATGCAT	3 cut(s)	6, 201, 1444
NspI	RCATGY	2 cut(s)	203, 300
OliI	CACNNNNGTG	1 cut(s)	932
PaeI	GCATGC	2 cut(s)	203, 300
PaeR7I	CTCGAG	2 cut(s)	336, 891
PcsI	WCGNNNNNNNCGW	2 cut(s)	1029, 1469
PdiI	GCCGGC	2 cut(s)	791, 946
PfeI	GAWTC	5 cut(s)	1206, 1393, 1501, 1589, 1983
PflFI	GACNNNGTC	1 cut(s)	1139
PfoI	TCCNGGA	2 cut(s)	630, 1269
PinAI	ACCGGT	2 cut(s)	1109, 1739
PkrI	GCNGC	6 cut(s)	292, 295, 472, 898, 1221, 1650
Ple19I	CGATCG	1 cut(s)	1041
PleI	GAGTC	3 cut(s)	1454, 1505, 1602
PmaCI	CACGTG	2 cut(s)	1179, 1196
PmlI	CACGTG	2 cut(s)	1179, 1196
PpsI	GAGTC	3 cut(s)	1454, 1505, 1602
Ppu21I	YACGTR	4 cut(s)	644, 1179, 1196, 1798
PspCI	CACGTG	2 cut(s)	1179, 1196
PspEI	GGTNACC	2 cut(s)	1466, 1747
PspN4I	GGNNCC	7 cut(s)	928, 1101, 1108, 1492, 1695, 1768, 1951
PspPI	GGNCC	5 cut(s)	1099, 1273, 1581, 1701, 1767
PspXI	VCTCGAGB	1 cut(s)	891
PsyI	GACNNNGTC	1 cut(s)	1139
PvuI	CGATCG	1 cut(s)	1041
PvuII	CAGCTG	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	932
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	7 cut(s)	249, 449, 1008, 1158, 1521, 1619, 2035
SatI	GCNGC	6 cut(s)	291, 294, 471, 897, 1220, 1649
Sau96I	GGNCC	5 cut(s)	1099, 1273, 1581, 1701, 1767
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	3 cut(s)	1454, 1505, 1603
ScrFI	CCNGG	5 cut(s)	551, 632, 1103, 1104, 1271
SduI	GDGCHC	3 cut(s)	402, 858, 1530
SfaNI	GCATC	3 cut(s)	1096, 1725, 1915
SfcI	CTRYAG	1 cut(s)	1686
Sfr274I	CTCGAG	2 cut(s)	336, 891
SgrAI	CRCCGGYG	1 cut(s)	929
SinI	GGWCC	4 cut(s)	1099, 1273, 1581, 1767
SlaI	CTCGAG	2 cut(s)	336, 891
SmaI	CCCGGG	1 cut(s)	1104
SmiMI	CAYNNNNRTG	1 cut(s)	932
SmlI	CTYRAG	3 cut(s)	336, 794, 891
SmoI	CTYRAG	3 cut(s)	336, 794, 891
SnaBI	TACGTA	1 cut(s)	1798
SphI	GCATGC	2 cut(s)	203, 300
Sse9I	AATT	7 cut(s)	74, 530, 1051, 1359, 1553, 1621, 1805
SsiI	CCGC	6 cut(s)	554, 781, 897, 1182, 1505, 1691
StyD4I	CCNGG	5 cut(s)	549, 630, 1101, 1102, 1269
StyI	CCWWGG	3 cut(s)	390, 1654, 1697
TaaI	ACNGT	5 cut(s)	234, 719, 1025, 1061, 1991
TaiI	ACGT	6 cut(s)	646, 1140, 1181, 1198, 1410, 1800
TaqI	TCGA	8 cut(s)	155, 337, 396, 417, 546, 892, 1032, 1592
TasI	AATT	7 cut(s)	74, 530, 1051, 1359, 1553, 1621, 1805
TatI	WGTACW	3 cut(s)	616, 1677, 1840
TauI	GCSGC	1 cut(s)	899
TfiI	GAWTC	5 cut(s)	1206, 1393, 1501, 1589, 1983
Tru1I	TTAA	7 cut(s)	249, 449, 1008, 1158, 1521, 1619, 2035
Tru9I	TTAA	7 cut(s)	249, 449, 1008, 1158, 1521, 1619, 2035
TscAI	CASTG	1 cut(s)	1548
TseFI	GTSAC	4 cut(s)	1019, 1191, 1466, 1747
TseI	GCWGC	5 cut(s)	290, 293, 470, 1219, 1648
Tsp45I	GTSAC	4 cut(s)	1019, 1191, 1466, 1747
TspDTI	ATGAA	7 cut(s)	205, 839, 1322, 1392, 1514, 1586, 1952
TspGWI	ACGGA	4 cut(s)	647, 978, 1265, 1942
TspMI	CCCGGG	1 cut(s)	1102
TspRI	CASTG	1 cut(s)	1548
Tth111I	GACNNNGTC	1 cut(s)	1139
VpaK11BI	GGWCC	4 cut(s)	1099, 1273, 1581, 1767
XapI	RAATTY	2 cut(s)	1359, 1621
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	2 cut(s)	203, 300
XhoI	CTCGAG	2 cut(s)	336, 891
XmaI	CCCGGG	1 cut(s)	1102
XmaJI	CCTAGG	1 cut(s)	1654
XmiI	GTMKAC	2 cut(s)	417, 954
ZrmI	AGTACT	1 cut(s)	618
Zsp2I	ATGCAT	3 cut(s)	6, 201, 1444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.