Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016517

Physical Location & Seq

Genomic Coordinates Reverse (-)

10332593 .. 10334728

Gene Structure 2136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG069800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGCATGCCTCTTTGCATTTCTTCACTACTCCTCCACAGTCCTCTTCCACTCGTCAAACTCCAAGTAAAACGCACATACCCACAACTCAAAACGCAGCAGTATGCAAAATCCTCATCAACCCAATGAGAAAAACGCTACCTCGAGAAACCCAGAAACCACCTTTGCCCCTACCAAAAACTAAACCCTTGGTCGAGCCCGTGCCTGAAACCAAACCCTGTTACCCTTCTCACTTAAACCCACTTCAAAAACTAGCAGCCTCAGTATTAGACAAACTAGAAGCTGTGGTTATAGAGCCTCTAGAAAAGAAGCAAAAATTGCCCAAGACTATCGACCCGGCGGTTCAGATATCCGGCAACTTCGCGCCGGTTCGGGAGAGTCCGGTTCAGCACGGGCTTGAAGTACTAGGTCAAATCCCGGATTGTTTACGTGGCGTTTATGTCCGTAACGGCGCTAATCCTATGTTTACGCCCTCGGGTGGTCATCACTTGTTTGATGGGGACGGTATGCTCCACGCGCTCACTTTGGGCGTGGGTAACAAAGCTAGCTACTCTTGTAGGTACACCCGCACGAGCCGGCTCAAGCAAGAAGCCAAGCTAGGGCGGCCGATGTTTCCGAAGCCGATAGGTGAGCTTCATGGGCACTCGGGTTTGGCTCGGCTCGGCTTGTTTTTGGCTCGAGCCACAATCGGCTTGGTTGACGGCTCACAAGGCATCGGCGTGGCTAATGCCGGCTTGGTCTACTTCAACGGACGCTTATTAGCCATGTCCGAGGATGACCTCCCTTACAATGTTAAGATCAAAGGTGACGGTGATCTCGAAACGATCGGACGGTTCAATTTCAACGGTGGTCTCGACCGGCCTTTGATTGCGCATCCAAAGGTGGACCCGGTGACGGGTGAGCTCCACGCGCTGAGCTACGACGTGGTCAACAAACCTCACCTTAAATACTACAAGTTTGACACGTGCGGGAGAAAGTCACGTGAGGTGGGAATCACACTAGAGCAGCCTACTATGGTGCATGACTTTGCCATAACGGAGAACTATGCTGTGATCCCGGACCAGCAAGTTGTATTCAAGCTATCCGAAATGATGAAAGGCGGGTCGCCCGTAATCTATGACCCGAAAAAGATGTCTCGCTTTGGAATTTTGCCCAAGAATGATGAAGAGGGGTTGGGGATTCAATGGATCAATGTACCCGATTGCTTTTGTTTCCATTTGTGCAATGCATGGGAGGAAACTTCGGACTCGGGTGACCCGATCATTGTTGTCATTGGTTCCTGCATGAATCCGCCTGACTCGGTTTTTAACGAGCACAATACTGACCCACTGCGGATTGAATTATCCGAAATCCGGATGAACATGAGGTCCGGAGAATCGAGTCGTCGGGTCATTGTCTCGGGTTTAAATTTAGAAGTGGGGGTGGTGAACAAGCAGCTCCTAGGGCAAAAGACTAGATATTTGTACATGGCTATAGCGGAGCCATGGCCCAAGTGTTCGGGCATCGCTAAGGTGGATGTGGAAACCGGTTCGGTGACCAAGTATATGTACGGGACCGGCCGGTTCGGAGGTGAGCCGTTTTACGTACCCAAATTGAGAAGTGGCAGCGTGGGAAACAATGGAGTTGTACAAGGGGATGATGATGAGGGATATCTAATGGGTTTTGTGAGGGATGAGAGGGAGGAGAAATCAGAAATGGTGATCTTGGATGCTTCAAGCATGAATCAAGTGGGTTCAGTGAGATTGCCTGCTAGAGTTCCTTATGGATTCCACGGTACATTTATTAGTGAACAAGATTTGAAGGAGCAGGCTTTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

605

Amino Acids

66.59

Weight (kDa)

7.61

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	120 - 595	7e-129	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24220
fragaria_vesca	FvH4_4g05900
malus_domestica	MD16G1235500.v1.1
prunus_persica	Prupe.1G061300_v2.0.a1
pyrus_communis	pycom16g19710
rosa_chinensis	RchiOBHm_Chr4g0397001
rosa_laevigata	RLG00000009460
rosa_multiflora	Rmu_sc0002963.1_g000015
rosa_roxburghii	Rroxscaffold_5G00341990
rosa_rugosa	Rorug03G0345900
rosa_samantha	Rh4BG072400 Rh4CG080700 Rh4DG069800
rosa_wichuraiana	Rw4G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	870
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	3 cut(s)	362, 515, 908
AccIII	TCCGGA	2 cut(s)	1350, 1367
AciI	CCGC	8 cut(s)	338, 565, 601, 966, 1098, 1289, 1330, 1475
AclWI	GGATC	2 cut(s)	1045, 1193
AcoI	YGGCCR	2 cut(s)	602, 1555
AcsI	RAATTY	2 cut(s)	1143, 1405
AcvI	CACGTG	2 cut(s)	963, 980
AfaI	GTAC	8 cut(s)	402, 560, 1194, 1463, 1547, 1584, 1626, 1774
AfiI	CCNNNNNNNGG	5 cut(s)	476, 597, 892, 893, 1350
AflIII	ACRYGT	1 cut(s)	960
AgeI	ACCGGT	1 cut(s)	1523
AjiI	CACGTC	1 cut(s)	922
AloI	GAACNNNNNNTCC	2 cut(s)	1349, 1381
AluBI	AGCT	9 cut(s)	281, 542, 546, 595, 631, 901, 915, 1078, 1435
AluI	AGCT	9 cut(s)	281, 542, 546, 595, 631, 901, 915, 1078, 1435
Alw21I	GWGCWC	2 cut(s)	903, 1314
Alw26I	GTCTC	3 cut(s)	854, 1137, 1399
AlwI	GGATC	2 cut(s)	1045, 1193
Ama87I	CYCGRG	6 cut(s)	141, 472, 643, 675, 1246, 1396
Aor13HI	TCCGGA	2 cut(s)	1350, 1367
AoxI	GGCC	4 cut(s)	602, 857, 1484, 1555
ApeKI	GCWGC	5 cut(s)	95, 254, 1003, 1432, 1602
ApoI	RAATTY	2 cut(s)	1143, 1405
ArsI	GACNNNNNNTTYG	4 cut(s)	1115, 1147, 1441, 1473
AsiGI	ACCGGT	1 cut(s)	1523
AspA2I	CCTAGG	1 cut(s)	1438
AspLEI	GCGC	5 cut(s)	364, 452, 517, 871, 910
AspS9I	GGNCC	5 cut(s)	883, 1057, 1365, 1485, 1551
AsuC2I	CCSGG	4 cut(s)	335, 416, 887, 1055
AsuNHI	GCTAGC	1 cut(s)	542
AvaI	CYCGRG	6 cut(s)	141, 472, 643, 675, 1246, 1396
AvaII	GGWCC	4 cut(s)	883, 1057, 1365, 1551
AvrII	CCTAGG	1 cut(s)	1438
BaeGI	GKGCMC	1 cut(s)	642
BanII	GRGCYC	2 cut(s)	198, 903
BauI	CACGAG	1 cut(s)	568
BbrPI	CACGTG	2 cut(s)	963, 980
Bbv12I	GWGCWC	2 cut(s)	903, 1314
BbvI	GCAGC	5 cut(s)	107, 266, 1015, 1444, 1614
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	3 cut(s)	463, 715, 1558
BcnI	CCSGG	4 cut(s)	335, 416, 887, 1055
BcoDI	GTCTC	3 cut(s)	854, 1137, 1399
BfmI	CTRYAG	1 cut(s)	1470
BfoI	RGCGCY	1 cut(s)	453
BisI	GCNGC	6 cut(s)	96, 255, 602, 1004, 1433, 1603
BlnI	CCTAGG	1 cut(s)	1438
BlpI	GCTNAGC	1 cut(s)	911
BlsI	GCNGC	6 cut(s)	97, 256, 603, 1005, 1434, 1604
BmcAI	AGTACT	1 cut(s)	402
Bme1390I	CCNGG	4 cut(s)	335, 416, 887, 1055
Bme18I	GGWCC	4 cut(s)	883, 1057, 1365, 1551
BmeT110I	CYCGRG	6 cut(s)	141, 472, 643, 675, 1246, 1396
BmgBI	CACGTC	1 cut(s)	922
BmgT120I	GGNCC	5 cut(s)	883, 1057, 1365, 1485, 1551
BmiI	GGNNCC	4 cut(s)	885, 1276, 1479, 1552
BmrFI	CCNGG	4 cut(s)	335, 416, 887, 1055
BmsI	GCATC	4 cut(s)	720, 880, 1509, 1696
BmtI	GCTAGC	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	1506
Bpu1102I	GCTNAGC	1 cut(s)	911
BpuEI	CTTGAG	1 cut(s)	563
BpuMI	CCSGG	4 cut(s)	335, 416, 887, 1055
BsaAI	YACGTR	4 cut(s)	428, 963, 980, 1582
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	6 cut(s)	186, 471, 768, 1438, 1481, 1768
BsaWI	WCCGGW	4 cut(s)	379, 1350, 1367, 1523
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	5 cut(s)	476, 597, 892, 893, 1350
Bse118I	RCCGGY	7 cut(s)	364, 573, 728, 855, 1523, 1553, 1557
Bse3DI	GCAATG	1 cut(s)	1228
BseAI	TCCGGA	2 cut(s)	1350, 1367
BseDI	CCNNGG	6 cut(s)	186, 471, 768, 1438, 1481, 1768
BseGI	GGATG	7 cut(s)	778, 871, 1359, 1519, 1639, 1675, 1711
BseLI	CCNNNNNNNGG	5 cut(s)	476, 597, 892, 893, 1350
BseMI	GCAATG	1 cut(s)	1228
BseMII	CTCAG	2 cut(s)	273, 902
BseRI	GAGGAG	2 cut(s)	21, 1694
BseSI	GKGCMC	1 cut(s)	642
BseX3I	CGGCCG	2 cut(s)	602, 1555
BseXI	GCAGC	5 cut(s)	107, 266, 1015, 1444, 1614
Bsh1236I	CGCG	3 cut(s)	362, 515, 908
Bsh1285I	CGRYCG	4 cut(s)	605, 825, 856, 1558
BshFI	GGCC	4 cut(s)	604, 859, 1486, 1557
BshTI	ACCGGT	1 cut(s)	1523
BsiEI	CGRYCG	4 cut(s)	605, 825, 856, 1558
BsiHKAI	GWGCWC	2 cut(s)	903, 1314
BsiHKCI	CYCGRG	6 cut(s)	141, 472, 643, 675, 1246, 1396
BslFI	GGGAC	2 cut(s)	512, 1564
BslI	CCNNNNNNNGG	5 cut(s)	476, 597, 892, 893, 1350
BsmAI	GTCTC	3 cut(s)	854, 1137, 1399
BsmFI	GGGAC	2 cut(s)	512, 1564
BsnI	GGCC	4 cut(s)	604, 859, 1486, 1557
Bso31I	GGTCTC	1 cut(s)	854
BsoBI	CYCGRG	6 cut(s)	141, 472, 643, 675, 1246, 1396
Bsp1286I	GDGCHC	4 cut(s)	198, 642, 903, 1314
Bsp13I	TCCGGA	2 cut(s)	1350, 1367
Bsp1407I	TGTACA	2 cut(s)	1461, 1624
Bsp143I	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
Bsp1720I	GCTNAGC	1 cut(s)	911
Bsp19I	CCATGG	1 cut(s)	1481
BspACI	CCGC	8 cut(s)	338, 565, 601, 966, 1098, 1289, 1330, 1475
BspANI	GGCC	4 cut(s)	604, 859, 1486, 1557
BspCNI	CTCAG	2 cut(s)	272, 903
BspEI	TCCGGA	2 cut(s)	1350, 1367
BspFNI	CGCG	3 cut(s)	362, 515, 908
BspLI	GGNNCC	4 cut(s)	885, 1276, 1479, 1552
BspOI	GCTAGC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	1045, 1193
BspTNI	GGTCTC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	1228
BsrFI	RCCGGY	7 cut(s)	364, 573, 728, 855, 1523, 1553, 1557
BsrGI	TGTACA	2 cut(s)	1461, 1624
BssAI	RCCGGY	7 cut(s)	364, 573, 728, 855, 1523, 1553, 1557
BssECI	CCNNGG	6 cut(s)	186, 471, 768, 1438, 1481, 1768
BssMI	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
BssSI	CACGAG	1 cut(s)	568
BssT1I	CCWWGG	3 cut(s)	186, 1438, 1481
Bst2BI	CACGAG	1 cut(s)	568
Bst4CI	ACNGT	6 cut(s)	39, 503, 809, 831, 845, 1772
Bst6I	CTCTTC	2 cut(s)	49, 1158
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstAUI	TGTACA	2 cut(s)	1461, 1624
BstBAI	YACGTR	4 cut(s)	428, 963, 980, 1582
BstC8I	GCNNGC	6 cut(s)	6, 544, 575, 730, 1746, 1806
BstDEI	CTNAG	3 cut(s)	259, 911, 1506
BstDSI	CCRYGG	2 cut(s)	1481, 1768
BstEII	GGTNACC	2 cut(s)	1250, 1531
BstF5I	GGATG	7 cut(s)	778, 871, 1359, 1519, 1639, 1675, 1711
BstFNI	CGCG	3 cut(s)	362, 515, 908
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	5 cut(s)	364, 452, 517, 871, 910
BstKTI	GATC	7 cut(s)	798, 814, 825, 1053, 1188, 1260, 1701
BstMAI	GTCTC	3 cut(s)	854, 1137, 1399
BstMBI	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
BstMCI	CGRYCG	4 cut(s)	605, 825, 856, 1558
BstMWI	GCNNNNNNNGC	7 cut(s)	316, 514, 601, 637, 708, 907, 1441
BstNSI	RCATGY	1 cut(s)	8
BstPI	GGTNACC	2 cut(s)	1250, 1531
BstSCI	CCNGG	4 cut(s)	333, 414, 885, 1053
BstSFI	CTRYAG	1 cut(s)	1470
BstSLI	GKGCMC	1 cut(s)	642
BstSNI	TACGTA	1 cut(s)	1582
BstUI	CGCG	3 cut(s)	362, 515, 908
BstV1I	GCAGC	5 cut(s)	107, 266, 1015, 1444, 1614
BstZI	CGGCCG	2 cut(s)	602, 1555
BsuRI	GGCC	4 cut(s)	604, 859, 1486, 1557
BtgI	CCRYGG	2 cut(s)	1481, 1768
BtgZI	GCGATG	1 cut(s)	1486
BtrI	CACGTC	1 cut(s)	922
BtsCI	GGATG	7 cut(s)	778, 871, 1359, 1519, 1639, 1675, 1711
BtsI	GCAGTG	1 cut(s)	1325
BtsIMutI	CAGTG	2 cut(s)	1325, 1740
Cac8I	GCNNGC	6 cut(s)	6, 544, 575, 730, 1746, 1806
CfoI	GCGC	5 cut(s)	364, 452, 517, 871, 910
Cfr10I	RCCGGY	7 cut(s)	364, 573, 728, 855, 1523, 1553, 1557
Cfr13I	GGNCC	5 cut(s)	883, 1057, 1365, 1485, 1551
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	8 cut(s)	401, 559, 1193, 1462, 1546, 1583, 1625, 1773
CspAI	ACCGGT	1 cut(s)	1523
CviQI	GTAC	8 cut(s)	401, 559, 1193, 1462, 1546, 1583, 1625, 1773
DdeI	CTNAG	3 cut(s)	259, 911, 1506
DpnI	GATC	7 cut(s)	797, 813, 824, 1052, 1187, 1259, 1700
DpnII	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
DraI	TTTAAA	1 cut(s)	1404
EaeI	YGGCCR	2 cut(s)	602, 1555
EagI	CGGCCG	2 cut(s)	602, 1555
Eam1104I	CTCTTC	2 cut(s)	49, 1158
EarI	CTCTTC	2 cut(s)	49, 1158
EciI	GGCGGA	1 cut(s)	1278
Ecl136II	GAGCTC	1 cut(s)	901
EclXI	CGGCCG	2 cut(s)	602, 1555
Eco105I	TACGTA	1 cut(s)	1582
Eco130I	CCWWGG	3 cut(s)	186, 1438, 1481
Eco24I	GRGCYC	2 cut(s)	198, 903
Eco31I	GGTCTC	1 cut(s)	854
Eco32I	GATATC	2 cut(s)	348, 1649
Eco47I	GGWCC	4 cut(s)	883, 1057, 1365, 1551
Eco52I	CGGCCG	2 cut(s)	602, 1555
Eco53kI	GAGCTC	1 cut(s)	901
Eco72I	CACGTG	2 cut(s)	963, 980
Eco88I	CYCGRG	6 cut(s)	141, 472, 643, 675, 1246, 1396
Eco91I	GGTNACC	2 cut(s)	1250, 1531
EcoICRI	GAGCTC	1 cut(s)	901
EcoO65I	GGTNACC	2 cut(s)	1250, 1531
EcoRV	GATATC	2 cut(s)	348, 1649
EcoT14I	CCWWGG	3 cut(s)	186, 1438, 1481
EcoT22I	ATGCAT	2 cut(s)	6, 1228
EcoT38I	GRGCYC	2 cut(s)	198, 903
ErhI	CCWWGG	3 cut(s)	186, 1438, 1481
FaqI	GGGAC	2 cut(s)	512, 1564
FauI	CCCGC	3 cut(s)	572, 959, 1091
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	6 cut(s)	96, 255, 602, 1004, 1433, 1603
FokI	GGATG	7 cut(s)	785, 858, 1366, 1526, 1646, 1682, 1718
FriOI	GRGCYC	2 cut(s)	198, 903
Fsp4HI	GCNGC	6 cut(s)	96, 255, 602, 1004, 1433, 1603
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	5 cut(s)	363, 451, 516, 870, 909
GluI	GCNGC	6 cut(s)	96, 255, 602, 1004, 1433, 1603
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	604, 859, 1486, 1557
HgaI	GACGC	1 cut(s)	759
HhaI	GCGC	5 cut(s)	364, 452, 517, 871, 910
Hin6I	GCGC	5 cut(s)	362, 450, 515, 869, 908
HinP1I	GCGC	5 cut(s)	362, 450, 515, 869, 908
HincII	GTYRAC	2 cut(s)	697, 928
HindII	GTYRAC	2 cut(s)	697, 928
Hpy166II	GTNNAC	9 cut(s)	425, 465, 561, 697, 739, 883, 928, 1426, 1787
Hpy188I	TCNGA	9 cut(s)	345, 615, 769, 827, 1084, 1243, 1345, 1565, 1690
Hpy188III	TCNNGA	7 cut(s)	143, 299, 371, 815, 851, 1351, 1368
Hpy8I	GTNNAC	9 cut(s)	425, 465, 561, 697, 739, 883, 928, 1426, 1787
Hpy99I	CGWCG	2 cut(s)	923, 1386
HpyAV	CCTTC	2 cut(s)	234, 1792
HpyCH4III	ACNGT	6 cut(s)	39, 503, 809, 831, 845, 1772
HpyCH4IV	ACGT	5 cut(s)	427, 921, 962, 979, 1581
HpyCH4V	TGCA	7 cut(s)	4, 16, 105, 1018, 1221, 1226, 1281
HpyF10VI	GCNNNNNNNGC	7 cut(s)	316, 514, 601, 637, 708, 907, 1441
HpyF3I	CTNAG	3 cut(s)	259, 911, 1506
HpySE526I	ACGT	5 cut(s)	427, 921, 962, 979, 1581
HspAI	GCGC	5 cut(s)	362, 450, 515, 869, 908
Kpn2I	TCCGGA	2 cut(s)	1350, 1367
KroI	GCCGGC	2 cut(s)	573, 728
KroNI	GCCGGC	2 cut(s)	575, 730
Kzo9I	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
LmnI	GCTCC	5 cut(s)	513, 906, 1440, 1477, 1801
Lsp1109I	GCAGC	5 cut(s)	107, 266, 1015, 1444, 1614
LweI	GCATC	4 cut(s)	720, 880, 1509, 1696
MaeII	ACGT	5 cut(s)	427, 921, 962, 979, 1581
MaeIII	GTNAC	8 cut(s)	218, 443, 533, 803, 889, 975, 1250, 1531
MalI	GATC	7 cut(s)	797, 813, 824, 1052, 1187, 1259, 1700
MboI	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
MboII	GAAGA	3 cut(s)	13, 36, 1175
MhlI	GDGCHC	4 cut(s)	198, 642, 903, 1314
MluCI	AATT	6 cut(s)	314, 835, 1143, 1337, 1405, 1589
MlyI	GAGTC	4 cut(s)	385, 1238, 1289, 1387
Mph1103I	ATGCAT	2 cut(s)	6, 1228
MroI	TCCGGA	2 cut(s)	1350, 1367
MroNI	GCCGGC	2 cut(s)	573, 728
MseI	TTAA	6 cut(s)	233, 792, 942, 1305, 1403, 1816
MslI	CAYNNNNRTG	1 cut(s)	716
MspR9I	CCNGG	4 cut(s)	335, 416, 887, 1055
MvnI	CGCG	3 cut(s)	362, 515, 908
MwoI	GCNNNNNNNGC	7 cut(s)	316, 514, 601, 637, 708, 907, 1441
NaeI	GCCGGC	2 cut(s)	575, 730
NciI	CCSGG	4 cut(s)	335, 416, 887, 1055
NcoI	CCATGG	1 cut(s)	1481
NdeII	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
NgoMIV	GCCGGC	2 cut(s)	573, 728
NheI	GCTAGC	1 cut(s)	542
NlaIV	GGNNCC	4 cut(s)	885, 1276, 1479, 1552
NmeAIII	GCCGAG	2 cut(s)	634, 639
NmuCI	GTSAC	5 cut(s)	803, 889, 975, 1250, 1531
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	6, 1228
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	2 cut(s)	141, 675
PcsI	WCGNNNNNNNCGW	3 cut(s)	813, 849, 1253
PdiI	GCCGGC	2 cut(s)	575, 730
PfeI	GAWTC	6 cut(s)	990, 1177, 1285, 1373, 1720, 1764
PflFI	GACNNNGTC	1 cut(s)	923
PfoI	TCCNGGA	2 cut(s)	414, 1053
PinAI	ACCGGT	1 cut(s)	1523
PkrI	GCNGC	6 cut(s)	97, 256, 603, 1005, 1434, 1604
Ple19I	CGATCG	1 cut(s)	825
PleI	GAGTC	4 cut(s)	384, 1238, 1289, 1386
PmaCI	CACGTG	2 cut(s)	963, 980
PmlI	CACGTG	2 cut(s)	963, 980
PpsI	GAGTC	4 cut(s)	384, 1238, 1289, 1386
Ppu21I	YACGTR	4 cut(s)	428, 963, 980, 1582
Psp124BI	GAGCTC	1 cut(s)	903
PspCI	CACGTG	2 cut(s)	963, 980
PspEI	GGTNACC	2 cut(s)	1250, 1531
PspN4I	GGNNCC	4 cut(s)	885, 1276, 1479, 1552
PspPI	GGNCC	5 cut(s)	883, 1057, 1365, 1485, 1551
PspXI	VCTCGAGB	1 cut(s)	675
PsyI	GACNNNGTC	1 cut(s)	923
PvuI	CGATCG	1 cut(s)	825
RsaI	GTAC	8 cut(s)	402, 560, 1194, 1463, 1547, 1584, 1626, 1774
RsaNI	GTAC	8 cut(s)	401, 559, 1193, 1462, 1546, 1583, 1625, 1773
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	903
SaqAI	TTAA	6 cut(s)	233, 792, 942, 1305, 1403, 1816
SatI	GCNGC	6 cut(s)	96, 255, 602, 1004, 1433, 1603
Sau3AI	GATC	7 cut(s)	795, 811, 822, 1050, 1185, 1257, 1698
Sau96I	GGNCC	5 cut(s)	883, 1057, 1365, 1485, 1551
ScaI	AGTACT	1 cut(s)	402
SchI	GAGTC	4 cut(s)	385, 1238, 1289, 1387
ScrFI	CCNGG	4 cut(s)	335, 416, 887, 1055
SduI	GDGCHC	4 cut(s)	198, 642, 903, 1314
SfaNI	GCATC	4 cut(s)	720, 880, 1509, 1696
SfcI	CTRYAG	1 cut(s)	1470
Sfr274I	CTCGAG	2 cut(s)	141, 675
SinI	GGWCC	4 cut(s)	883, 1057, 1365, 1551
SlaI	CTCGAG	2 cut(s)	141, 675
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	3 cut(s)	141, 578, 675
SmoI	CTYRAG	3 cut(s)	141, 578, 675
SnaBI	TACGTA	1 cut(s)	1582
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	6 cut(s)	314, 835, 1143, 1337, 1405, 1589
SsiI	CCGC	8 cut(s)	338, 565, 601, 966, 1098, 1289, 1330, 1475
SstI	GAGCTC	1 cut(s)	903
StyD4I	CCNGG	4 cut(s)	333, 414, 885, 1053
StyI	CCWWGG	3 cut(s)	186, 1438, 1481
TaaI	ACNGT	6 cut(s)	39, 503, 809, 831, 845, 1772
TaiI	ACGT	5 cut(s)	430, 924, 965, 982, 1584
TaqI	TCGA	7 cut(s)	142, 192, 330, 676, 816, 852, 1376
TasI	AATT	6 cut(s)	314, 835, 1143, 1337, 1405, 1589
TatI	WGTACW	3 cut(s)	400, 1461, 1624
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	6 cut(s)	990, 1177, 1285, 1373, 1720, 1764
Tru1I	TTAA	6 cut(s)	233, 792, 942, 1305, 1403, 1816
Tru9I	TTAA	6 cut(s)	233, 792, 942, 1305, 1403, 1816
TscAI	CASTG	2 cut(s)	1332, 1740
TseFI	GTSAC	5 cut(s)	803, 889, 975, 1250, 1531
TseI	GCWGC	5 cut(s)	95, 254, 1003, 1432, 1602
Tsp45I	GTSAC	5 cut(s)	803, 889, 975, 1250, 1531
TspDTI	ATGAA	6 cut(s)	623, 1106, 1176, 1298, 1370, 1733
TspGWI	ACGGA	3 cut(s)	431, 762, 1049
TspRI	CASTG	2 cut(s)	1332, 1740
Tth111I	GACNNNGTC	1 cut(s)	923
VpaK11BI	GGWCC	4 cut(s)	883, 1057, 1365, 1551
XapI	RAATTY	2 cut(s)	1143, 1405
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XhoI	CTCGAG	2 cut(s)	141, 675
XmaJI	CCTAGG	1 cut(s)	1438
XmiI	GTMKAC	1 cut(s)	738
ZrmI	AGTACT	1 cut(s)	402
Zsp2I	ATGCAT	2 cut(s)	6, 1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.