Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016517

Physical Location & Seq

Genomic Coordinates Reverse (-)

14409164 .. 14411051

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGAGAAAAACGCTACCTCGAGAAACCCAGAAACCATTGAAACCACCTTTGCCCCTACCAAAAACTAAACCCTTGGTCGAGCCCGTGCCTGAAATAGTCGACCCAACCAAACCGTGTTACCCTTCTCACTTAAACCCACTTCAAAAACTAGCAGCCTCAGTATTAGACAAACTAGAAGCTGTGGTTATAGAACCTCTAGAAAAGAAGCAAAAATTGCCCAAGACTATCGACCCGGCGGTTCAGATATCCGGCAACTTCGCGCCGGTTCGGGAGTGTCCGGTTCAGCACGGGCTTGAAGTACTAGGTCAAATCCCGGATTGTTTACGTGGCGTTTATGTCCGTAACGGCGCTAATCCTATGTTTACGCCCTCGGGTGGTCATCACTTGTTTGATGGGGACGGTATGATCCACGCGCTCACTTTGGGCATTGGTAACAAAGCTAGCTACTCTTGTAGGTACACCCGCACGAACCGGCTCAAGCAAGAAGCCAAGCTAGGGCGGCCGATGTTTCCGAAGCCGATAGGTGAGCTTCATGGGCACTCGGGTTTGGCTCGGCTCGGTTTGTTCTTGGCTCGAGCCGCAATCGGCTTGGTTGACTGCTCACAAGGCACCGGCGTGGCTAATGCCGGCTTGGTCTACTTCAACGGACGCTTATTAGCCATGTCCGAGGATGACCTCCCTTACAATGTTAAGATCAAAGCTGACGGTGATCTCGAAACGATCGGACGGTTCAATTTCAACGGAGGTCTCGACCGGTCTATGATTGCGCATCCAAAGGTAGACCCGGTGACGGGTGAGCTCCACGCGCTGAGCTACGACGTGGTCAACAAACCTCACCTTAAATACTACAACTTCGACACGTGTGGGAGAAAGTCACGTGAGGTGGGAATCACACTAGAGCAGCCTACTATGGTGCATGACTTTGCCATAACGGAGAACTATGCTGTGATACCGGACCAGCAAGTTGTATTCAAGCTATCCGAATTGATGAAAGGCGGGTCGCCCGTAATCTATGACCCGGAAAAGATGTCTCGCTTTGGAATTTTGCCCAAGAATGATGAAGAGGGGTCGGGGATTCAATGGATCAACGTACCCGATTGCTTTTGTTTCCATTTGTGCAATGCATGGGAGGAAACTTCGGACTCGGGTGACCCGATCATTGTTGTCATTGGTTCCTGCATGAATCCGCCTGACTCGGTTTTTAACGAGCACAATACTGACCCACTGCGGATTGAATTATCCGAAATCCGGATGAACATGAGGTCCGGAGAATCGAGTCGTCGGGTCATTGTCTCGGGTTTAAATTTAGAAGTGGGGGTGGTGAACAAGCAGCTCCTAGGGCAAAAGACTACATATTTGTACATGGCTATAGCGGAGCCATGGCCCAAGTGTTCGGGCATCGCTAAGGTGGATGTGGAAACCGGTTCGGTGACCAAGTATATGTACGGGACCGGCCGGTTCGGAGGTGAGCCGTTTTACGTACCCAAATTGAGAAGTGGTAGCGTGGGAAACAATGGAGTAGTACAAGGGGGTGATGATGATGAGGGATATCTAATGGGTTTTGTGAGGGATGAGAGGGAGGAGAAATCAGAAATGGTGATCTTGGATGCTTCAAGCATGAAGCAAGTGGGTTCAGTGAGATTGCCTGCTAGAGTTCCTTATGGATTCCACGGTACATTTATTAGTGAACAAGATTTGAAGGAGCAGGCTTTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

572

Amino Acids

62.92

Weight (kDa)

6.3

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	86 - 562	9.3e-128	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24220
fragaria_vesca	FvH4_4g05900
malus_domestica	MD16G1235500.v1.1
prunus_persica	Prupe.1G061300_v2.0.a1
pyrus_communis	pycom16g19710
rosa_chinensis	RchiOBHm_Chr4g0397001
rosa_laevigata	RLG00000009460
rosa_multiflora	Rmu_sc0002963.1_g000015
rosa_roxburghii	Rroxscaffold_5G00341990
rosa_rugosa	Rorug03G0345900
rosa_samantha	Rh4BG072400 Rh4CG080700 Rh4DG069800
rosa_wichuraiana	Rw4G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	3 cut(s)	99, 636, 780
AccII	CGCG	3 cut(s)	260, 413, 806
AccIII	TCCGGA	2 cut(s)	1248, 1265
AciI	CCGC	8 cut(s)	236, 463, 499, 579, 996, 1187, 1228, 1373
AclWI	GGATC	2 cut(s)	400, 1091
AcoI	YGGCCR	2 cut(s)	500, 1453
AcsI	RAATTY	2 cut(s)	1041, 1303
AcvI	CACGTG	2 cut(s)	861, 878
AfaI	GTAC	8 cut(s)	300, 458, 1092, 1361, 1445, 1482, 1524, 1675
AfiI	CCNNNNNNNGG	5 cut(s)	374, 495, 790, 791, 1248
AflIII	ACRYGT	2 cut(s)	858, 860
AgeI	ACCGGT	2 cut(s)	753, 1421
AjiI	CACGTC	1 cut(s)	820
AleI	CACNNNNGTG	1 cut(s)	614
AloI	GAACNNNNNNTCC	2 cut(s)	1247, 1279
Alw21I	GWGCWC	2 cut(s)	801, 1212
Alw26I	GTCTC	3 cut(s)	752, 1035, 1297
AlwI	GGATC	2 cut(s)	400, 1091
Ama87I	CYCGRG	6 cut(s)	18, 370, 541, 573, 1144, 1294
Aor13HI	TCCGGA	2 cut(s)	1248, 1265
AoxI	GGCC	3 cut(s)	500, 1382, 1453
ApeKI	GCWGC	3 cut(s)	152, 901, 1330
ApoI	RAATTY	2 cut(s)	1041, 1303
ArsI	GACNNNNNNTTYG	2 cut(s)	1339, 1371
AsiGI	ACCGGT	2 cut(s)	753, 1421
AspA2I	CCTAGG	1 cut(s)	1336
AspLEI	GCGC	5 cut(s)	262, 350, 415, 769, 808
AspS9I	GGNCC	4 cut(s)	955, 1263, 1383, 1449
AsuC2I	CCSGG	4 cut(s)	233, 314, 785, 1019
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	6 cut(s)	18, 370, 541, 573, 1144, 1294
AvaII	GGWCC	3 cut(s)	955, 1263, 1449
AvrII	CCTAGG	1 cut(s)	1336
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	84, 801
BbrPI	CACGTG	2 cut(s)	861, 878
Bbv12I	GWGCWC	2 cut(s)	801, 1212
BbvI	GCAGC	3 cut(s)	164, 913, 1342
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	2 cut(s)	361, 1456
BcnI	CCSGG	4 cut(s)	233, 314, 785, 1019
BcoDI	GTCTC	3 cut(s)	752, 1035, 1297
BfaI	CTAG	9 cut(s)	149, 173, 197, 302, 441, 494, 896, 1337, 1650
BfmI	CTRYAG	1 cut(s)	1368
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	5 cut(s)	153, 500, 579, 902, 1331
BlnI	CCTAGG	1 cut(s)	1336
BlpI	GCTNAGC	1 cut(s)	809
BlsI	GCNGC	5 cut(s)	154, 501, 580, 903, 1332
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	4 cut(s)	233, 314, 785, 1019
Bme18I	GGWCC	3 cut(s)	955, 1263, 1449
BmeT110I	CYCGRG	6 cut(s)	18, 370, 541, 573, 1144, 1294
BmgBI	CACGTC	1 cut(s)	820
BmgT120I	GGNCC	4 cut(s)	955, 1263, 1383, 1449
BmiI	GGNNCC	4 cut(s)	610, 1174, 1377, 1450
BmrFI	CCNGG	4 cut(s)	233, 314, 785, 1019
BmsI	GCATC	3 cut(s)	778, 1407, 1597
BmtI	GCTAGC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	1404
Bpu1102I	GCTNAGC	1 cut(s)	809
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	4 cut(s)	233, 314, 785, 1019
BsaAI	YACGTR	4 cut(s)	326, 861, 878, 1480
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	6 cut(s)	72, 369, 666, 1336, 1379, 1669
BsaWI	WCCGGW	6 cut(s)	277, 753, 952, 1248, 1265, 1421
Bsc4I	CCNNNNNNNGG	5 cut(s)	374, 495, 790, 791, 1248
Bse118I	RCCGGY	8 cut(s)	262, 471, 611, 626, 753, 1421, 1451, 1455
Bse3DI	GCAATG	1 cut(s)	1126
BseAI	TCCGGA	2 cut(s)	1248, 1265
BseDI	CCNNGG	6 cut(s)	72, 369, 666, 1336, 1379, 1669
BseGI	GGATG	6 cut(s)	676, 769, 1257, 1417, 1576, 1612
BseLI	CCNNNNNNNGG	5 cut(s)	374, 495, 790, 791, 1248
BseMI	GCAATG	1 cut(s)	1126
BseMII	CTCAG	2 cut(s)	171, 800
BseRI	GAGGAG	1 cut(s)	1595
BseSI	GKGCMC	1 cut(s)	540
BseX3I	CGGCCG	2 cut(s)	500, 1453
BseXI	GCAGC	3 cut(s)	164, 913, 1342
Bsh1236I	CGCG	3 cut(s)	260, 413, 806
Bsh1285I	CGRYCG	4 cut(s)	503, 723, 754, 1456
BshFI	GGCC	3 cut(s)	502, 1384, 1455
BshNI	GGYRCC	1 cut(s)	608
BshTI	ACCGGT	2 cut(s)	753, 1421
BsiEI	CGRYCG	4 cut(s)	503, 723, 754, 1456
BsiHKAI	GWGCWC	2 cut(s)	801, 1212
BsiHKCI	CYCGRG	6 cut(s)	18, 370, 541, 573, 1144, 1294
BslFI	GGGAC	2 cut(s)	410, 1462
BslI	CCNNNNNNNGG	5 cut(s)	374, 495, 790, 791, 1248
BsmAI	GTCTC	3 cut(s)	752, 1035, 1297
BsmFI	GGGAC	2 cut(s)	410, 1462
BsnI	GGCC	3 cut(s)	502, 1384, 1455
Bso31I	GGTCTC	1 cut(s)	752
BsoBI	CYCGRG	6 cut(s)	18, 370, 541, 573, 1144, 1294
Bsp1286I	GDGCHC	4 cut(s)	84, 540, 801, 1212
Bsp13I	TCCGGA	2 cut(s)	1248, 1265
Bsp1407I	TGTACA	1 cut(s)	1359
Bsp143I	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
Bsp1720I	GCTNAGC	1 cut(s)	809
Bsp19I	CCATGG	1 cut(s)	1379
BspACI	CCGC	8 cut(s)	236, 463, 499, 579, 996, 1187, 1228, 1373
BspANI	GGCC	3 cut(s)	502, 1384, 1455
BspCNI	CTCAG	2 cut(s)	170, 801
BspEI	TCCGGA	2 cut(s)	1248, 1265
BspFNI	CGCG	3 cut(s)	260, 413, 806
BspLI	GGNNCC	4 cut(s)	610, 1174, 1377, 1450
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	400, 1091
BspT107I	GGYRCC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	1126
BsrFI	RCCGGY	8 cut(s)	262, 471, 611, 626, 753, 1421, 1451, 1455
BsrGI	TGTACA	1 cut(s)	1359
BssAI	RCCGGY	8 cut(s)	262, 471, 611, 626, 753, 1421, 1451, 1455
BssECI	CCNNGG	6 cut(s)	72, 369, 666, 1336, 1379, 1669
BssMI	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
BssT1I	CCWWGG	3 cut(s)	72, 1336, 1379
Bst4CI	ACNGT	5 cut(s)	114, 401, 707, 729, 1673
Bst6I	CTCTTC	1 cut(s)	1056
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	1359
BstBAI	YACGTR	4 cut(s)	326, 861, 878, 1480
BstC8I	GCNNGC	4 cut(s)	442, 628, 1647, 1707
BstDEI	CTNAG	3 cut(s)	157, 809, 1404
BstDSI	CCRYGG	2 cut(s)	1379, 1669
BstEII	GGTNACC	2 cut(s)	1148, 1429
BstF5I	GGATG	6 cut(s)	676, 769, 1257, 1417, 1576, 1612
BstFNI	CGCG	3 cut(s)	260, 413, 806
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	5 cut(s)	262, 350, 415, 769, 808
BstKTI	GATC	7 cut(s)	408, 696, 712, 723, 1086, 1158, 1602
BstMAI	GTCTC	3 cut(s)	752, 1035, 1297
BstMBI	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
BstMCI	CGRYCG	4 cut(s)	503, 723, 754, 1456
BstMWI	GCNNNNNNNGC	7 cut(s)	214, 499, 535, 578, 606, 805, 1339
BstPI	GGTNACC	2 cut(s)	1148, 1429
BstSCI	CCNGG	4 cut(s)	231, 312, 783, 1017
BstSFI	CTRYAG	1 cut(s)	1368
BstSLI	GKGCMC	1 cut(s)	540
BstSNI	TACGTA	1 cut(s)	1480
BstUI	CGCG	3 cut(s)	260, 413, 806
BstV1I	GCAGC	3 cut(s)	164, 913, 1342
BstZI	CGGCCG	2 cut(s)	500, 1453
BsuRI	GGCC	3 cut(s)	502, 1384, 1455
BtgI	CCRYGG	2 cut(s)	1379, 1669
BtgZI	GCGATG	1 cut(s)	1384
BtrI	CACGTC	1 cut(s)	820
BtsCI	GGATG	6 cut(s)	676, 769, 1257, 1417, 1576, 1612
BtsI	GCAGTG	1 cut(s)	1223
BtsIMutI	CAGTG	2 cut(s)	1223, 1641
Cac8I	GCNNGC	4 cut(s)	442, 628, 1647, 1707
CfoI	GCGC	5 cut(s)	262, 350, 415, 769, 808
Cfr10I	RCCGGY	8 cut(s)	262, 471, 611, 626, 753, 1421, 1451, 1455
Cfr13I	GGNCC	4 cut(s)	955, 1263, 1383, 1449
CseI	GACGC	1 cut(s)	657
Csp6I	GTAC	8 cut(s)	299, 457, 1091, 1360, 1444, 1481, 1523, 1674
CspAI	ACCGGT	2 cut(s)	753, 1421
CviAII	CATG	9 cut(s)	533, 661, 917, 1125, 1180, 1258, 1363, 1380, 1618
CviQI	GTAC	8 cut(s)	299, 457, 1091, 1360, 1444, 1481, 1523, 1674
DdeI	CTNAG	3 cut(s)	157, 809, 1404
DpnI	GATC	7 cut(s)	407, 695, 711, 722, 1085, 1157, 1601
DpnII	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
DraI	TTTAAA	1 cut(s)	1302
EaeI	YGGCCR	2 cut(s)	500, 1453
EagI	CGGCCG	2 cut(s)	500, 1453
Eam1104I	CTCTTC	1 cut(s)	1056
EarI	CTCTTC	1 cut(s)	1056
EciI	GGCGGA	1 cut(s)	1176
Ecl136II	GAGCTC	1 cut(s)	799
EclXI	CGGCCG	2 cut(s)	500, 1453
Eco105I	TACGTA	1 cut(s)	1480
Eco130I	CCWWGG	3 cut(s)	72, 1336, 1379
Eco24I	GRGCYC	2 cut(s)	84, 801
Eco31I	GGTCTC	1 cut(s)	752
Eco32I	GATATC	2 cut(s)	246, 1550
Eco47I	GGWCC	3 cut(s)	955, 1263, 1449
Eco52I	CGGCCG	2 cut(s)	500, 1453
Eco53kI	GAGCTC	1 cut(s)	799
Eco72I	CACGTG	2 cut(s)	861, 878
Eco88I	CYCGRG	6 cut(s)	18, 370, 541, 573, 1144, 1294
Eco91I	GGTNACC	2 cut(s)	1148, 1429
EcoICRI	GAGCTC	1 cut(s)	799
EcoO65I	GGTNACC	2 cut(s)	1148, 1429
EcoRV	GATATC	2 cut(s)	246, 1550
EcoT14I	CCWWGG	3 cut(s)	72, 1336, 1379
EcoT22I	ATGCAT	1 cut(s)	1126
EcoT38I	GRGCYC	2 cut(s)	84, 801
ErhI	CCWWGG	3 cut(s)	72, 1336, 1379
FaeI	CATG	9 cut(s)	536, 664, 920, 1128, 1183, 1261, 1366, 1383, 1621
FaqI	GGGAC	2 cut(s)	410, 1462
FatI	CATG	9 cut(s)	532, 660, 916, 1124, 1179, 1257, 1362, 1379, 1617
FauI	CCCGC	2 cut(s)	470, 989
FblI	GTMKAC	3 cut(s)	99, 636, 780
Fnu4HI	GCNGC	5 cut(s)	153, 500, 579, 902, 1331
FokI	GGATG	6 cut(s)	683, 756, 1264, 1424, 1583, 1619
FriOI	GRGCYC	2 cut(s)	84, 801
Fsp4HI	GCNGC	5 cut(s)	153, 500, 579, 902, 1331
FspBI	CTAG	9 cut(s)	149, 173, 197, 302, 441, 494, 896, 1337, 1650
FspI	TGCGCA	1 cut(s)	768
GlaI	GCGC	5 cut(s)	261, 349, 414, 768, 807
GluI	GCNGC	5 cut(s)	153, 500, 579, 902, 1331
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	502, 1384, 1455
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	5 cut(s)	262, 350, 415, 769, 808
Hin1II	CATG	9 cut(s)	536, 664, 920, 1128, 1183, 1261, 1366, 1383, 1621
Hin6I	GCGC	5 cut(s)	260, 348, 413, 767, 806
HinP1I	GCGC	5 cut(s)	260, 348, 413, 767, 806
HincII	GTYRAC	3 cut(s)	100, 595, 826
HindII	GTYRAC	3 cut(s)	100, 595, 826
HinfI	GANTC	8 cut(s)	888, 1075, 1142, 1183, 1193, 1271, 1276, 1665
Hpy188I	TCNGA	9 cut(s)	243, 513, 667, 725, 982, 1141, 1243, 1463, 1591
Hpy188III	TCNNGA	7 cut(s)	20, 197, 269, 713, 749, 1249, 1266
Hpy99I	CGWCG	2 cut(s)	821, 1284
HpyAV	CCTTC	2 cut(s)	132, 1693
HpyCH4III	ACNGT	5 cut(s)	114, 401, 707, 729, 1673
HpyCH4IV	ACGT	6 cut(s)	325, 819, 860, 877, 1089, 1479
HpyCH4V	TGCA	4 cut(s)	916, 1119, 1124, 1179
HpyF10VI	GCNNNNNNNGC	7 cut(s)	214, 499, 535, 578, 606, 805, 1339
HpyF3I	CTNAG	3 cut(s)	157, 809, 1404
HpySE526I	ACGT	6 cut(s)	325, 819, 860, 877, 1089, 1479
Hsp92II	CATG	9 cut(s)	536, 664, 920, 1128, 1183, 1261, 1366, 1383, 1621
HspAI	GCGC	5 cut(s)	260, 348, 413, 767, 806
Kpn2I	TCCGGA	2 cut(s)	1248, 1265
KroI	GCCGGC	1 cut(s)	626
KroNI	GCCGGC	1 cut(s)	628
Kzo9I	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
LmnI	GCTCC	4 cut(s)	804, 1338, 1375, 1702
Lsp1109I	GCAGC	3 cut(s)	164, 913, 1342
LweI	GCATC	3 cut(s)	778, 1407, 1597
MaeI	CTAG	9 cut(s)	149, 173, 197, 302, 441, 494, 896, 1337, 1650
MaeII	ACGT	6 cut(s)	325, 819, 860, 877, 1089, 1479
MaeIII	GTNAC	7 cut(s)	116, 341, 431, 787, 873, 1148, 1429
MalI	GATC	7 cut(s)	407, 695, 711, 722, 1085, 1157, 1601
MboI	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
MboII	GAAGA	1 cut(s)	1073
MhlI	GDGCHC	4 cut(s)	84, 540, 801, 1212
MluCI	AATT	7 cut(s)	212, 733, 983, 1041, 1235, 1303, 1487
MlyI	GAGTC	3 cut(s)	1136, 1187, 1285
Mph1103I	ATGCAT	1 cut(s)	1126
MroI	TCCGGA	2 cut(s)	1248, 1265
MroNI	GCCGGC	1 cut(s)	626
MseI	TTAA	6 cut(s)	131, 690, 840, 1203, 1301, 1717
MslI	CAYNNNNRTG	1 cut(s)	614
MspR9I	CCNGG	4 cut(s)	233, 314, 785, 1019
MvnI	CGCG	3 cut(s)	260, 413, 806
MwoI	GCNNNNNNNGC	7 cut(s)	214, 499, 535, 578, 606, 805, 1339
NaeI	GCCGGC	1 cut(s)	628
NciI	CCSGG	4 cut(s)	233, 314, 785, 1019
NcoI	CCATGG	1 cut(s)	1379
NdeII	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
NgoMIV	GCCGGC	1 cut(s)	626
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	9 cut(s)	536, 664, 920, 1128, 1183, 1261, 1366, 1383, 1621
NlaIV	GGNNCC	4 cut(s)	610, 1174, 1377, 1450
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	4 cut(s)	787, 873, 1148, 1429
NsbI	TGCGCA	1 cut(s)	768
NsiI	ATGCAT	1 cut(s)	1126
OliI	CACNNNNGTG	1 cut(s)	614
PaeR7I	CTCGAG	2 cut(s)	18, 573
PcsI	WCGNNNNNNNCGW	3 cut(s)	711, 747, 1151
PdiI	GCCGGC	1 cut(s)	628
PfeI	GAWTC	5 cut(s)	888, 1075, 1183, 1271, 1665
PflFI	GACNNNGTC	1 cut(s)	821
PfoI	TCCNGGA	1 cut(s)	312
PinAI	ACCGGT	2 cut(s)	753, 1421
PkrI	GCNGC	5 cut(s)	154, 501, 580, 903, 1332
Ple19I	CGATCG	1 cut(s)	723
PleI	GAGTC	3 cut(s)	1136, 1187, 1284
PmaCI	CACGTG	2 cut(s)	861, 878
PmlI	CACGTG	2 cut(s)	861, 878
PpsI	GAGTC	3 cut(s)	1136, 1187, 1284
Ppu21I	YACGTR	4 cut(s)	326, 861, 878, 1480
Psp124BI	GAGCTC	1 cut(s)	801
PspCI	CACGTG	2 cut(s)	861, 878
PspEI	GGTNACC	2 cut(s)	1148, 1429
PspN4I	GGNNCC	4 cut(s)	610, 1174, 1377, 1450
PspPI	GGNCC	4 cut(s)	955, 1263, 1383, 1449
PspXI	VCTCGAGB	1 cut(s)	573
PsyI	GACNNNGTC	1 cut(s)	821
PvuI	CGATCG	1 cut(s)	723
RsaI	GTAC	8 cut(s)	300, 458, 1092, 1361, 1445, 1482, 1524, 1675
RsaNI	GTAC	8 cut(s)	299, 457, 1091, 1360, 1444, 1481, 1523, 1674
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	6 cut(s)	131, 690, 840, 1203, 1301, 1717
SatI	GCNGC	5 cut(s)	153, 500, 579, 902, 1331
Sau3AI	GATC	7 cut(s)	405, 693, 709, 720, 1083, 1155, 1599
Sau96I	GGNCC	4 cut(s)	955, 1263, 1383, 1449
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	3 cut(s)	1136, 1187, 1285
ScrFI	CCNGG	4 cut(s)	233, 314, 785, 1019
SduI	GDGCHC	4 cut(s)	84, 540, 801, 1212
SfaNI	GCATC	3 cut(s)	778, 1407, 1597
SfcI	CTRYAG	1 cut(s)	1368
Sfr274I	CTCGAG	2 cut(s)	18, 573
SgrAI	CRCCGGYG	1 cut(s)	611
SinI	GGWCC	3 cut(s)	955, 1263, 1449
SlaI	CTCGAG	2 cut(s)	18, 573
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	3 cut(s)	18, 476, 573
SmoI	CTYRAG	3 cut(s)	18, 476, 573
SnaBI	TACGTA	1 cut(s)	1480
Sse9I	AATT	7 cut(s)	212, 733, 983, 1041, 1235, 1303, 1487
SsiI	CCGC	8 cut(s)	236, 463, 499, 579, 996, 1187, 1228, 1373
SspMI	CTAG	9 cut(s)	149, 173, 197, 302, 441, 494, 896, 1337, 1650
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	4 cut(s)	231, 312, 783, 1017
StyI	CCWWGG	3 cut(s)	72, 1336, 1379
TaaI	ACNGT	5 cut(s)	114, 401, 707, 729, 1673
TaiI	ACGT	6 cut(s)	328, 822, 863, 880, 1092, 1482
TaqI	TCGA	9 cut(s)	19, 78, 99, 228, 574, 714, 750, 855, 1274
TasI	AATT	7 cut(s)	212, 733, 983, 1041, 1235, 1303, 1487
TatI	WGTACW	3 cut(s)	298, 1359, 1522
TauI	GCSGC	2 cut(s)	502, 581
TfiI	GAWTC	5 cut(s)	888, 1075, 1183, 1271, 1665
Tru1I	TTAA	6 cut(s)	131, 690, 840, 1203, 1301, 1717
Tru9I	TTAA	6 cut(s)	131, 690, 840, 1203, 1301, 1717
TscAI	CASTG	2 cut(s)	1230, 1641
TseFI	GTSAC	4 cut(s)	787, 873, 1148, 1429
TseI	GCWGC	3 cut(s)	152, 901, 1330
Tsp45I	GTSAC	4 cut(s)	787, 873, 1148, 1429
TspDTI	ATGAA	6 cut(s)	521, 1004, 1074, 1196, 1268, 1634
TspGWI	ACGGA	4 cut(s)	329, 660, 756, 947
TspRI	CASTG	2 cut(s)	1230, 1641
Tth111I	GACNNNGTC	1 cut(s)	821
VpaK11BI	GGWCC	3 cut(s)	955, 1263, 1449
XapI	RAATTY	2 cut(s)	1041, 1303
XbaI	TCTAGA	1 cut(s)	196
XhoI	CTCGAG	2 cut(s)	18, 573
XmaJI	CCTAGG	1 cut(s)	1336
XmiI	GTMKAC	3 cut(s)	99, 636, 780
XspI	CTAG	9 cut(s)	149, 173, 197, 302, 441, 494, 896, 1337, 1650
ZrmI	AGTACT	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.