Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0016517

Physical Location & Seq

Genomic Coordinates Reverse (-)

12730235 .. 12732323

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG072400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGCATGCCTCTTTGCATTTCATCACTACTCCTCCACAGTCCTCTTCCACTCTTAAAACTCCAAGTAAAACGCACATACCCACAACTCAAAACGCAGCAGTATGCAAAATCCTCATCAACCCAATGAGAAAAATGCTACCTCGAGAAACCCAGAAACCATTGAAACCACCTTTGCCCCTACCAAAAACTAAACCCTTGGTCGAGCCCGTGCCTGAAATAGTCGACCCAACCAAACCCTGTTACCCTTCTCACTTAAACCCACTTCAAAAACTAGCAGCCTCAGTATTAGACAAACTAGAAGCTGTGGTTATAGAGCCTCTAGAAAAGAAGCAAAAATTGCCCAAGACTATCGACCCGGCGGTTCAGATATCCGGCAACTTCGCGCCGGTTCGGGAGTGTCCGGTTCAGCACGGGCTTGAAGTACTAGGTCAAATCCCGGATTGTTTACGCGGCGTTTATGTCCGTAACGGCGCAAATCCTATGTTTACGCCCTCGGGTGGTCATCACTTGTTTGATGGGGACGGTATGATCCACGCGCTCACTTTGGGCGTGGGTAACAAAGCTAGCTACTCTTGTAGGTACACCCGCACGAGCCGGCTCAAGCAAGAAGCCAAGCTAGGGCGGCCGATGTTTCCGAAGCCGATAGGTGAGCTTCATGGGCACTCGGGTTTGGCTCGGCTCGGCTTGTTCTTGGCTCGAGCCGCAATCGGCTTGGTTGATGGCTCACAAGGCACCGGCGTGGCTAATGCCGGCTTGGTCTACTTCAACGGACGCTTATTAGCCATGTCCGAGGATGACCTCCCTTACAATGTTAAGATCAAAGGTGACGGTGATCTCGAAACGATCGGACGGTTCAATTTCAACGGTGGTCTCGACCGGCCTATGATTGCGCATCCAAAGGTGGACCCGGTGACGGGTGAGCTCCACGCGCTGAGCTACGACGTGGTCAACAAACCTCACCTTAAATACTACAAGTTTGACACGTGCGGGAGAAAGTCACGTGAGGTGGGAATCACACTAGAGCAGCCTACTATGGTGCATGACTTTGCCATAACGGAGAACTATGCTGTGATCCCGGACCAGCAAGTTGTATTCAAGCTATCCGAAATGATGAAAGGCGGGTCGCCCGTAATCTATGACCCGAAAAAGATGTCTCGCTTTGGAATTTTGCCCAAGAATGATGAAGAGGGGTTGGGGATTCAATGGATCAATGTACCCGATTGCTTTTGTTTCCATTTGTGCAATGCATGGGAGGAAACTTCGGACTCGGGTGACCCGATCATTGTTGTCATTGGTTCCTGCATGAATCCGCCTGACTCGGTTTTTAACGAGCACAATACTGACCCACTGCGGATTGAATTATCCGAAATCCGGATGAACATGAGGTCCGGAGAATCGAGTCGTCGGGTCATTGTCTCGGGTTTAAATTTAGAAGTGGGGGTGGTGAAAAAGCAGCTCCTAGGGCAAAAGACTACATATTTGTACATGGCTATAGCGGAGCCATGGCCCAAGTGTTCGGGCATCGCTAAGGTGGATGTGGAAACCGGTTCGGTGACCAAGTATATGTACGGGACCGGCCGGTTCGGAGGTGAGCCGTTTTACGTACCCAAATTGAGAAGTGGCAGCGTGGGAAACAATGGAGTAGTACAAGGGGGTGATGATGATGAGGGATATCTAATGGGTTTTGTGAGGGATGAGAGGGAGGAGAAATCAGAAATGGTGATCTTGGATGCTTCAAGCATGAAGCAAGTGGGTTCTGTGAGATTGCCTGCTAGAGTTCCTTATGGATTCCACGGTACATTTATTAGTGAACGAGATTTGAAGGAGCAGGCTTTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009987 GO:0010114 GO:0010436 GO:0016020 GO:0016053 GO:0016106 GO:0016114 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045549 GO:0046165 GO:0046394 GO:0050896 GO:0051213 GO:0055035 GO:0055114 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

RPE65

Protein Analysis

613

Amino Acids

67.35

Weight (kDa)

8.15

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	127 - 603	9.2e-128	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24220
fragaria_vesca	FvH4_4g05900
malus_domestica	MD16G1235500.v1.1
prunus_persica	Prupe.1G061300_v2.0.a1
pyrus_communis	pycom16g19710
rosa_chinensis	RchiOBHm_Chr4g0397001
rosa_laevigata	RLG00000009460
rosa_multiflora	Rmu_sc0002963.1_g000015
rosa_roxburghii	Rroxscaffold_5G00341990
rosa_rugosa	Rorug03G0345900
rosa_samantha	Rh4BG072400 Rh4CG080700 Rh4DG069800
rosa_wichuraiana	Rw4G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	731
AccI	GTMKAC	2 cut(s)	222, 759
AccII	CGCG	4 cut(s)	383, 450, 536, 929
AccIII	TCCGGA	2 cut(s)	1371, 1388
AclWI	GGATC	3 cut(s)	523, 1066, 1214
AcoI	YGGCCR	2 cut(s)	623, 1576
AcsI	RAATTY	2 cut(s)	1164, 1426
AcvI	CACGTG	2 cut(s)	984, 1001
AfaI	GTAC	8 cut(s)	423, 581, 1215, 1484, 1568, 1605, 1647, 1798
AfiI	CCNNNNNNNGG	5 cut(s)	497, 618, 913, 914, 1371
AflIII	ACRYGT	1 cut(s)	981
AgeI	ACCGGT	1 cut(s)	1544
AjiI	CACGTC	1 cut(s)	943
AleI	CACNNNNGTG	1 cut(s)	737
AloI	GAACNNNNNNTCC	2 cut(s)	1370, 1402
AluBI	AGCT	9 cut(s)	302, 563, 567, 616, 652, 922, 936, 1099, 1456
AluI	AGCT	9 cut(s)	302, 563, 567, 616, 652, 922, 936, 1099, 1456
Alw21I	GWGCWC	2 cut(s)	924, 1335
Alw26I	GTCTC	3 cut(s)	875, 1158, 1420
AlwI	GGATC	3 cut(s)	523, 1066, 1214
Ama87I	CYCGRG	6 cut(s)	141, 493, 664, 696, 1267, 1417
Aor13HI	TCCGGA	2 cut(s)	1371, 1388
AoxI	GGCC	4 cut(s)	623, 878, 1505, 1576
ApeKI	GCWGC	5 cut(s)	95, 275, 1024, 1453, 1623
ApoI	RAATTY	2 cut(s)	1164, 1426
ArsI	GACNNNNNNTTYG	4 cut(s)	1136, 1168, 1462, 1494
AsiGI	ACCGGT	1 cut(s)	1544
AspA2I	CCTAGG	1 cut(s)	1459
AspLEI	GCGC	5 cut(s)	385, 473, 538, 892, 931
AspS9I	GGNCC	5 cut(s)	904, 1078, 1386, 1506, 1572
AsuC2I	CCSGG	4 cut(s)	356, 437, 908, 1076
AsuNHI	GCTAGC	1 cut(s)	563
AvaI	CYCGRG	6 cut(s)	141, 493, 664, 696, 1267, 1417
AvaII	GGWCC	4 cut(s)	904, 1078, 1386, 1572
AvrII	CCTAGG	1 cut(s)	1459
BaeGI	GKGCMC	1 cut(s)	663
BanI	GGYRCC	1 cut(s)	731
BanII	GRGCYC	2 cut(s)	207, 924
BauI	CACGAG	1 cut(s)	589
BbrPI	CACGTG	2 cut(s)	984, 1001
Bbv12I	GWGCWC	2 cut(s)	924, 1335
BbvI	GCAGC	5 cut(s)	107, 287, 1036, 1465, 1635
BccI	CCATC	2 cut(s)	509, 713
BceAI	ACGGC	2 cut(s)	484, 1579
BcnI	CCSGG	4 cut(s)	356, 437, 908, 1076
BcoDI	GTCTC	3 cut(s)	875, 1158, 1420
BfaI	CTAG	9 cut(s)	272, 296, 320, 425, 564, 617, 1019, 1460, 1773
BfmI	CTRYAG	1 cut(s)	1491
BisI	GCNGC	8 cut(s)	96, 276, 451, 623, 702, 1025, 1454, 1624
BlnI	CCTAGG	1 cut(s)	1459
BlpI	GCTNAGC	1 cut(s)	932
BlsI	GCNGC	8 cut(s)	97, 277, 452, 624, 703, 1026, 1455, 1625
BmcAI	AGTACT	1 cut(s)	423
Bme1390I	CCNGG	4 cut(s)	356, 437, 908, 1076
Bme18I	GGWCC	4 cut(s)	904, 1078, 1386, 1572
BmeT110I	CYCGRG	6 cut(s)	141, 493, 664, 696, 1267, 1417
BmgBI	CACGTC	1 cut(s)	943
BmgT120I	GGNCC	5 cut(s)	904, 1078, 1386, 1506, 1572
BmiI	GGNNCC	5 cut(s)	733, 906, 1297, 1500, 1573
BmrFI	CCNGG	4 cut(s)	356, 437, 908, 1076
BmsI	GCATC	3 cut(s)	901, 1530, 1720
BmtI	GCTAGC	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	1527
Bpu1102I	GCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	4 cut(s)	356, 437, 908, 1076
BsaAI	YACGTR	3 cut(s)	984, 1001, 1603
BsaI	GGTCTC	1 cut(s)	875
BsaJI	CCNNGG	6 cut(s)	195, 492, 789, 1459, 1502, 1792
BsaWI	WCCGGW	4 cut(s)	400, 1371, 1388, 1544
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	5 cut(s)	497, 618, 913, 914, 1371
Bse118I	RCCGGY	8 cut(s)	385, 594, 734, 749, 876, 1544, 1574, 1578
Bse3DI	GCAATG	1 cut(s)	1249
BseAI	TCCGGA	2 cut(s)	1371, 1388
BseDI	CCNNGG	6 cut(s)	195, 492, 789, 1459, 1502, 1792
BseGI	GGATG	6 cut(s)	799, 892, 1380, 1540, 1699, 1735
BseLI	CCNNNNNNNGG	5 cut(s)	497, 618, 913, 914, 1371
BseMI	GCAATG	1 cut(s)	1249
BseMII	CTCAG	2 cut(s)	294, 923
BseRI	GAGGAG	2 cut(s)	21, 1718
BseSI	GKGCMC	1 cut(s)	663
BseX3I	CGGCCG	2 cut(s)	623, 1576
BseXI	GCAGC	5 cut(s)	107, 287, 1036, 1465, 1635
Bsh1236I	CGCG	4 cut(s)	383, 450, 536, 929
Bsh1285I	CGRYCG	4 cut(s)	626, 846, 877, 1579
BshFI	GGCC	4 cut(s)	625, 880, 1507, 1578
BshNI	GGYRCC	1 cut(s)	731
BshTI	ACCGGT	1 cut(s)	1544
BsiEI	CGRYCG	4 cut(s)	626, 846, 877, 1579
BsiHKAI	GWGCWC	2 cut(s)	924, 1335
BsiHKCI	CYCGRG	6 cut(s)	141, 493, 664, 696, 1267, 1417
BslFI	GGGAC	2 cut(s)	533, 1585
BslI	CCNNNNNNNGG	5 cut(s)	497, 618, 913, 914, 1371
BsmAI	GTCTC	3 cut(s)	875, 1158, 1420
BsmFI	GGGAC	2 cut(s)	533, 1585
BsnI	GGCC	4 cut(s)	625, 880, 1507, 1578
Bso31I	GGTCTC	1 cut(s)	875
BsoBI	CYCGRG	6 cut(s)	141, 493, 664, 696, 1267, 1417
Bsp1286I	GDGCHC	4 cut(s)	207, 663, 924, 1335
Bsp13I	TCCGGA	2 cut(s)	1371, 1388
Bsp1407I	TGTACA	1 cut(s)	1482
Bsp143I	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
Bsp1720I	GCTNAGC	1 cut(s)	932
Bsp19I	CCATGG	1 cut(s)	1502
BspANI	GGCC	4 cut(s)	625, 880, 1507, 1578
BspCNI	CTCAG	2 cut(s)	293, 924
BspEI	TCCGGA	2 cut(s)	1371, 1388
BspFNI	CGCG	4 cut(s)	383, 450, 536, 929
BspLI	GGNNCC	5 cut(s)	733, 906, 1297, 1500, 1573
BspOI	GCTAGC	1 cut(s)	567
BspPI	GGATC	3 cut(s)	523, 1066, 1214
BspT107I	GGYRCC	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	875
BsrDI	GCAATG	1 cut(s)	1249
BsrFI	RCCGGY	8 cut(s)	385, 594, 734, 749, 876, 1544, 1574, 1578
BsrGI	TGTACA	1 cut(s)	1482
BssAI	RCCGGY	8 cut(s)	385, 594, 734, 749, 876, 1544, 1574, 1578
BssECI	CCNNGG	6 cut(s)	195, 492, 789, 1459, 1502, 1792
BssMI	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
BssSI	CACGAG	1 cut(s)	589
BssT1I	CCWWGG	3 cut(s)	195, 1459, 1502
Bst2BI	CACGAG	1 cut(s)	589
Bst4CI	ACNGT	6 cut(s)	39, 524, 830, 852, 866, 1796
Bst6I	CTCTTC	2 cut(s)	49, 1179
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	1482
BstBAI	YACGTR	3 cut(s)	984, 1001, 1603
BstC8I	GCNNGC	6 cut(s)	6, 565, 596, 751, 1770, 1830
BstDEI	CTNAG	3 cut(s)	280, 932, 1527
BstDSI	CCRYGG	2 cut(s)	1502, 1792
BstEII	GGTNACC	2 cut(s)	1271, 1552
BstF5I	GGATG	6 cut(s)	799, 892, 1380, 1540, 1699, 1735
BstFNI	CGCG	4 cut(s)	383, 450, 536, 929
BstHHI	GCGC	5 cut(s)	385, 473, 538, 892, 931
BstKTI	GATC	8 cut(s)	531, 819, 835, 846, 1074, 1209, 1281, 1725
BstMAI	GTCTC	3 cut(s)	875, 1158, 1420
BstMBI	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
BstMCI	CGRYCG	4 cut(s)	626, 846, 877, 1579
BstMWI	GCNNNNNNNGC	7 cut(s)	337, 622, 658, 701, 729, 928, 1462
BstNSI	RCATGY	1 cut(s)	8
BstPI	GGTNACC	2 cut(s)	1271, 1552
BstSCI	CCNGG	4 cut(s)	354, 435, 906, 1074
BstSFI	CTRYAG	1 cut(s)	1491
BstSLI	GKGCMC	1 cut(s)	663
BstSNI	TACGTA	1 cut(s)	1603
BstUI	CGCG	4 cut(s)	383, 450, 536, 929
BstV1I	GCAGC	5 cut(s)	107, 287, 1036, 1465, 1635
BstZI	CGGCCG	2 cut(s)	623, 1576
BsuRI	GGCC	4 cut(s)	625, 880, 1507, 1578
BtgI	CCRYGG	2 cut(s)	1502, 1792
BtgZI	GCGATG	1 cut(s)	1507
BtrI	CACGTC	1 cut(s)	943
BtsCI	GGATG	6 cut(s)	799, 892, 1380, 1540, 1699, 1735
BtsI	GCAGTG	1 cut(s)	1346
BtsIMutI	CAGTG	1 cut(s)	1346
Cac8I	GCNNGC	6 cut(s)	6, 565, 596, 751, 1770, 1830
CfoI	GCGC	5 cut(s)	385, 473, 538, 892, 931
Cfr10I	RCCGGY	8 cut(s)	385, 594, 734, 749, 876, 1544, 1574, 1578
Cfr13I	GGNCC	5 cut(s)	904, 1078, 1386, 1506, 1572
CseI	GACGC	1 cut(s)	780
Csp6I	GTAC	8 cut(s)	422, 580, 1214, 1483, 1567, 1604, 1646, 1797
CspAI	ACCGGT	1 cut(s)	1544
CviQI	GTAC	8 cut(s)	422, 580, 1214, 1483, 1567, 1604, 1646, 1797
DdeI	CTNAG	3 cut(s)	280, 932, 1527
DpnI	GATC	8 cut(s)	530, 818, 834, 845, 1073, 1208, 1280, 1724
DpnII	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
DraI	TTTAAA	1 cut(s)	1425
EaeI	YGGCCR	2 cut(s)	623, 1576
EagI	CGGCCG	2 cut(s)	623, 1576
Eam1104I	CTCTTC	2 cut(s)	49, 1179
EarI	CTCTTC	2 cut(s)	49, 1179
EciI	GGCGGA	1 cut(s)	1299
Ecl136II	GAGCTC	1 cut(s)	922
EclXI	CGGCCG	2 cut(s)	623, 1576
Eco105I	TACGTA	1 cut(s)	1603
Eco130I	CCWWGG	3 cut(s)	195, 1459, 1502
Eco24I	GRGCYC	2 cut(s)	207, 924
Eco31I	GGTCTC	1 cut(s)	875
Eco32I	GATATC	2 cut(s)	369, 1673
Eco47I	GGWCC	4 cut(s)	904, 1078, 1386, 1572
Eco52I	CGGCCG	2 cut(s)	623, 1576
Eco53kI	GAGCTC	1 cut(s)	922
Eco72I	CACGTG	2 cut(s)	984, 1001
Eco88I	CYCGRG	6 cut(s)	141, 493, 664, 696, 1267, 1417
Eco91I	GGTNACC	2 cut(s)	1271, 1552
EcoICRI	GAGCTC	1 cut(s)	922
EcoO65I	GGTNACC	2 cut(s)	1271, 1552
EcoRV	GATATC	2 cut(s)	369, 1673
EcoT14I	CCWWGG	3 cut(s)	195, 1459, 1502
EcoT22I	ATGCAT	2 cut(s)	6, 1249
EcoT38I	GRGCYC	2 cut(s)	207, 924
ErhI	CCWWGG	3 cut(s)	195, 1459, 1502
FaqI	GGGAC	2 cut(s)	533, 1585
FauI	CCCGC	3 cut(s)	593, 980, 1112
FblI	GTMKAC	2 cut(s)	222, 759
Fnu4HI	GCNGC	8 cut(s)	96, 276, 451, 623, 702, 1025, 1454, 1624
FokI	GGATG	6 cut(s)	806, 879, 1387, 1547, 1706, 1742
FriOI	GRGCYC	2 cut(s)	207, 924
Fsp4HI	GCNGC	8 cut(s)	96, 276, 451, 623, 702, 1025, 1454, 1624
FspBI	CTAG	9 cut(s)	272, 296, 320, 425, 564, 617, 1019, 1460, 1773
FspI	TGCGCA	1 cut(s)	891
GlaI	GCGC	5 cut(s)	384, 472, 537, 891, 930
GluI	GCNGC	8 cut(s)	96, 276, 451, 623, 702, 1025, 1454, 1624
HaeIII	GGCC	4 cut(s)	625, 880, 1507, 1578
HgaI	GACGC	1 cut(s)	780
HhaI	GCGC	5 cut(s)	385, 473, 538, 892, 931
Hin6I	GCGC	5 cut(s)	383, 471, 536, 890, 929
HinP1I	GCGC	5 cut(s)	383, 471, 536, 890, 929
HincII	GTYRAC	2 cut(s)	223, 949
HindII	GTYRAC	2 cut(s)	223, 949
HinfI	GANTC	8 cut(s)	1011, 1198, 1265, 1306, 1316, 1394, 1399, 1788
Hpy166II	GTNNAC	8 cut(s)	223, 446, 486, 582, 760, 904, 949, 1811
Hpy188I	TCNGA	9 cut(s)	366, 636, 790, 848, 1105, 1264, 1366, 1586, 1714
Hpy188III	TCNNGA	7 cut(s)	143, 320, 392, 836, 872, 1372, 1389
Hpy8I	GTNNAC	8 cut(s)	223, 446, 486, 582, 760, 904, 949, 1811
Hpy99I	CGWCG	2 cut(s)	944, 1407
HpyAV	CCTTC	2 cut(s)	255, 1816
HpyCH4III	ACNGT	6 cut(s)	39, 524, 830, 852, 866, 1796
HpyCH4IV	ACGT	4 cut(s)	942, 983, 1000, 1602
HpyCH4V	TGCA	7 cut(s)	4, 16, 105, 1039, 1242, 1247, 1302
HpyF10VI	GCNNNNNNNGC	7 cut(s)	337, 622, 658, 701, 729, 928, 1462
HpyF3I	CTNAG	3 cut(s)	280, 932, 1527
HpySE526I	ACGT	4 cut(s)	942, 983, 1000, 1602
HspAI	GCGC	5 cut(s)	383, 471, 536, 890, 929
Kpn2I	TCCGGA	2 cut(s)	1371, 1388
KroI	GCCGGC	2 cut(s)	594, 749
KroNI	GCCGGC	2 cut(s)	596, 751
Kzo9I	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
LmnI	GCTCC	4 cut(s)	927, 1461, 1498, 1825
Lsp1109I	GCAGC	5 cut(s)	107, 287, 1036, 1465, 1635
LweI	GCATC	3 cut(s)	901, 1530, 1720
MaeI	CTAG	9 cut(s)	272, 296, 320, 425, 564, 617, 1019, 1460, 1773
MaeII	ACGT	4 cut(s)	942, 983, 1000, 1602
MaeIII	GTNAC	8 cut(s)	239, 464, 554, 824, 910, 996, 1271, 1552
MalI	GATC	8 cut(s)	530, 818, 834, 845, 1073, 1208, 1280, 1724
MboI	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
MboII	GAAGA	2 cut(s)	36, 1196
MhlI	GDGCHC	4 cut(s)	207, 663, 924, 1335
MluCI	AATT	6 cut(s)	335, 856, 1164, 1358, 1426, 1610
MlyI	GAGTC	3 cut(s)	1259, 1310, 1408
Mph1103I	ATGCAT	2 cut(s)	6, 1249
MroI	TCCGGA	2 cut(s)	1371, 1388
MroNI	GCCGGC	2 cut(s)	594, 749
MseI	TTAA	7 cut(s)	54, 254, 813, 963, 1326, 1424, 1840
MslI	CAYNNNNRTG	1 cut(s)	737
MspR9I	CCNGG	4 cut(s)	356, 437, 908, 1076
MvnI	CGCG	4 cut(s)	383, 450, 536, 929
MwoI	GCNNNNNNNGC	7 cut(s)	337, 622, 658, 701, 729, 928, 1462
NaeI	GCCGGC	2 cut(s)	596, 751
NciI	CCSGG	4 cut(s)	356, 437, 908, 1076
NcoI	CCATGG	1 cut(s)	1502
NdeII	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
NgoMIV	GCCGGC	2 cut(s)	594, 749
NheI	GCTAGC	1 cut(s)	563
NlaIV	GGNNCC	5 cut(s)	733, 906, 1297, 1500, 1573
NmeAIII	GCCGAG	2 cut(s)	655, 660
NmuCI	GTSAC	5 cut(s)	824, 910, 996, 1271, 1552
NsbI	TGCGCA	1 cut(s)	891
NsiI	ATGCAT	2 cut(s)	6, 1249
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	737
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	2 cut(s)	141, 696
PcsI	WCGNNNNNNNCGW	3 cut(s)	834, 870, 1274
PdiI	GCCGGC	2 cut(s)	596, 751
PfeI	GAWTC	5 cut(s)	1011, 1198, 1306, 1394, 1788
PflFI	GACNNNGTC	1 cut(s)	944
PfoI	TCCNGGA	2 cut(s)	435, 1074
PinAI	ACCGGT	1 cut(s)	1544
PkrI	GCNGC	8 cut(s)	97, 277, 452, 624, 703, 1026, 1455, 1625
Ple19I	CGATCG	1 cut(s)	846
PleI	GAGTC	3 cut(s)	1259, 1310, 1407
PmaCI	CACGTG	2 cut(s)	984, 1001
PmlI	CACGTG	2 cut(s)	984, 1001
PpsI	GAGTC	3 cut(s)	1259, 1310, 1407
Ppu21I	YACGTR	3 cut(s)	984, 1001, 1603
Psp124BI	GAGCTC	1 cut(s)	924
PspCI	CACGTG	2 cut(s)	984, 1001
PspEI	GGTNACC	2 cut(s)	1271, 1552
PspN4I	GGNNCC	5 cut(s)	733, 906, 1297, 1500, 1573
PspPI	GGNCC	5 cut(s)	904, 1078, 1386, 1506, 1572
PspXI	VCTCGAGB	1 cut(s)	696
PsyI	GACNNNGTC	1 cut(s)	944
PvuI	CGATCG	1 cut(s)	846
RsaI	GTAC	8 cut(s)	423, 581, 1215, 1484, 1568, 1605, 1647, 1798
RsaNI	GTAC	8 cut(s)	422, 580, 1214, 1483, 1567, 1604, 1646, 1797
RseI	CAYNNNNRTG	1 cut(s)	737
SacI	GAGCTC	1 cut(s)	924
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	7 cut(s)	54, 254, 813, 963, 1326, 1424, 1840
SatI	GCNGC	8 cut(s)	96, 276, 451, 623, 702, 1025, 1454, 1624
Sau3AI	GATC	8 cut(s)	528, 816, 832, 843, 1071, 1206, 1278, 1722
Sau96I	GGNCC	5 cut(s)	904, 1078, 1386, 1506, 1572
ScaI	AGTACT	1 cut(s)	423
SchI	GAGTC	3 cut(s)	1259, 1310, 1408
ScrFI	CCNGG	4 cut(s)	356, 437, 908, 1076
SduI	GDGCHC	4 cut(s)	207, 663, 924, 1335
SfaNI	GCATC	3 cut(s)	901, 1530, 1720
SfcI	CTRYAG	1 cut(s)	1491
Sfr274I	CTCGAG	2 cut(s)	141, 696
SgrAI	CRCCGGYG	1 cut(s)	734
SinI	GGWCC	4 cut(s)	904, 1078, 1386, 1572
SlaI	CTCGAG	2 cut(s)	141, 696
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	3 cut(s)	141, 599, 696
SmoI	CTYRAG	3 cut(s)	141, 599, 696
SnaBI	TACGTA	1 cut(s)	1603
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	6 cut(s)	335, 856, 1164, 1358, 1426, 1610
SspMI	CTAG	9 cut(s)	272, 296, 320, 425, 564, 617, 1019, 1460, 1773
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	4 cut(s)	354, 435, 906, 1074
StyI	CCWWGG	3 cut(s)	195, 1459, 1502
TaaI	ACNGT	6 cut(s)	39, 524, 830, 852, 866, 1796
TaiI	ACGT	4 cut(s)	945, 986, 1003, 1605
TaqI	TCGA	8 cut(s)	142, 201, 222, 351, 697, 837, 873, 1397
TasI	AATT	6 cut(s)	335, 856, 1164, 1358, 1426, 1610
TatI	WGTACW	3 cut(s)	421, 1482, 1645
TauI	GCSGC	3 cut(s)	453, 625, 704
TfiI	GAWTC	5 cut(s)	1011, 1198, 1306, 1394, 1788
Tru1I	TTAA	7 cut(s)	54, 254, 813, 963, 1326, 1424, 1840
Tru9I	TTAA	7 cut(s)	54, 254, 813, 963, 1326, 1424, 1840
TscAI	CASTG	1 cut(s)	1353
TseFI	GTSAC	5 cut(s)	824, 910, 996, 1271, 1552
TseI	GCWGC	5 cut(s)	95, 275, 1024, 1453, 1623
Tsp45I	GTSAC	5 cut(s)	824, 910, 996, 1271, 1552
TspDTI	ATGAA	7 cut(s)	10, 644, 1127, 1197, 1319, 1391, 1757
TspGWI	ACGGA	3 cut(s)	452, 783, 1070
TspRI	CASTG	1 cut(s)	1353
Tth111I	GACNNNGTC	1 cut(s)	944
VpaK11BI	GGWCC	4 cut(s)	904, 1078, 1386, 1572
XapI	RAATTY	2 cut(s)	1164, 1426
XbaI	TCTAGA	1 cut(s)	319
XceI	RCATGY	1 cut(s)	8
XhoI	CTCGAG	2 cut(s)	141, 696
XmaJI	CCTAGG	1 cut(s)	1459
XmiI	GTMKAC	2 cut(s)	222, 759
XspI	CTAG	9 cut(s)	272, 296, 320, 425, 564, 617, 1019, 1460, 1773
ZrmI	AGTACT	1 cut(s)	423
Zsp2I	ATGCAT	2 cut(s)	6, 1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.