Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005362

Physical Location & Seq

Genomic Coordinates Reverse (-)

18178023 .. 18178666

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20420.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAAACTGGGTAAGCCCAATTTTAGCCCTTTTCCATATGATTTTTGCAATGTGGTTGATGAAGACACATGGTTGAAAATGAACAACGATTTCATAGCTGACCTAGATTACCTTCAAATGACTCCCCACCAAGTGACGAAGCTCCTGTCATTCGATCGAGAGAGAACTAAACTACAAAAAGAAGCAAAGTTAATTAGAGAAATCCCTCATAGGATTTCTGAATATGCAACAACTTGCAAAGGCTTTTATGTGGATGTGTTATCAAAGACTCAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

6.71

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59540 AT1G59540
fragaria_vesca	FvH4_2g32710 FvH4_2g32710 FvH4_2g32710 FvH4_2g32710 FvH4_2g32710
malus_domestica	MD07G1107700.v1.1 MD08G1078700.v1.1 MD15G1065700.v1.1
prunus_persica	Prupe.1G419600_v2.0.a1 Prupe.1G419600_v2.0.a1
pyrus_communis	pycom08g06510 pycom15g06210 pycom16g20420
rosa_chinensis	RchiOBHm_Chr6g0309971
rosa_laevigata	RLG00000010520 RLG00000032729
rosa_multiflora	Rmu_sc0000294.1_g000009 Rmu_sc0000507.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158990 Rroxscaffold_7G00202540
rosa_rugosa	Rorug06G0376300 Rorug06G0376400.1
rosa_samantha	Rh6AG490200 Rh6BG499700 Rh6CG504500 Rh6DG490600
rosa_wichuraiana	Rw6G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	76, 116
AluBI	AGCT	2 cut(s)	98, 142
AluI	AGCT	2 cut(s)	98, 142
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
BbsI	GAAGAC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	259
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	5 cut(s)	16, 27, 98, 142, 243
CviKI_1	RGCY	5 cut(s)	16, 27, 98, 142, 243
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	133
FaeI	CATG	1 cut(s)	72
FaiI	YATR	8 cut(s)	37, 39, 70, 95, 210, 225, 249, 277
FatI	CATG	1 cut(s)	68
FauNDI	CATATG	1 cut(s)	37
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	1 cut(s)	104
Hin1II	CATG	1 cut(s)	72
HinfI	GANTC	2 cut(s)	121, 268
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	48, 227, 237
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	1 cut(s)	158
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	74
MluCI	AATT	2 cut(s)	19, 192
MlyI	GAGTC	2 cut(s)	115, 262
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	191
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	133
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	2 cut(s)	115, 262
PpsI	GAGTC	2 cut(s)	115, 262
PvuI	CGATCG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	191
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	115, 262
SetI	ASST	4 cut(s)	100, 105, 114, 144
SgeI	CNNG	7 cut(s)	20, 81, 116, 143, 157, 170, 246
Sse9I	AATT	2 cut(s)	19, 192
SspMI	CTAG	1 cut(s)	104
TaqI	TCGA	2 cut(s)	153, 157
TasI	AATT	2 cut(s)	19, 192
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	17, 75, 82, 95
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.