Rorug06G0376300
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005362
Physical Location & Seq
Forward (+)
52285702 .. 52290507
4806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0376300.1

Sequence Viewer

Length: 2457 bp
ATGGAGCTACCGGAGTTGCCGGAGTGCCCAGTGTGTCTCCAAAACTACGACGGCGCGTCGACGATTCCGCGCGTGCTGGGTTGCGGCCACTCGGCGTGCGAGGTCTGCCTGGCGAAGCTGCCCCACCGCTACCCGGAGACGATTCGCTGCCCGGCGTGTACTCAGCTAGTCAAGTACCCTCAGAACGGCGCCGCCGCGCTGCCCAAGAACATCGACCTCCTCTCGCTCTCTCTCTCCCTCTCTCCGCCGCAAAACCCTAACCCTAATTCCGACGATCCCCGGAAGCCACGTCAGCAATCCGCGGATGAAGAAGTGTTTAAATTCCTGCCGCGGCTATGGTCCGACGAGTTTTATAGTGCTTGGAAGGACTGGGTCGTTGGGTATGACGCCGTTTTGGTCGAAAAGGAAGAAAGGGCTCGGCTTTGTGATTCTGGTGCTGCTGTGGGGTTAGTTCAAGTTGGGTTTTTGGAGAGATTGGGTGATTCTAAATTTGAGTTTAGCTACAATGTGAGGGTTATGAAGTGTTTGAGTGAAATGACAGAGGAGGAGAGGAGAGAATTGGGTTTATTGCTGAGAGGTTCTGGGAGGCAGTGTAGGAGGATAGGGAAGGTTTATGGGTTTTGGGGTAATGTGGAAGATGGGGTTTTGTATTTAGTGTGTGAGAGCCAGAATGGGAGGTTTGAGGAGAAGTTGAGGGGTTTGAGAAATGGGGATGGGTTTGGGAGAGATGGGTTGTGTGGTTTTGGTGTGATTGGTATGGAGGTGTGTGAGGCGGTGATGGGGTTGCATTCGGAGGGGTTTGTTGGTGGTGGTTTTGGTGTTTCGTGTTTTGGATTCGATGAGTTTGGCCATGTTTTTGTGGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGGTTTGGAGAAGTGTTGAGGATAGTGTTTCTGGTAGAAAGGGAATTGGTGCTGAAGAAATGGGAGTGATGTTTGGGAGTTTATTGAAAGATGAGGCTTTTGTTAGCATGGAGGTGTTGTTTGAGGTGTTGAAGAAAGAGGGCATTGCAGTGGAATGTGAGAGCTCGAAATATATGGTTGGGTATGGCTCGGATGTTTGGTCATTAGCTTGTGTTTTGCTCAGTCTGCTTCTTGGGAAAGAGTTCAGTGAAGAGATTGGAAATATGAATCATATTTGCGATCATTCAATGTATGCAAGTTGGATTGAAAGAGTTGGTGATTTGCTGGACAGTAGATTGGGTTCTGAATATGCATCACTGAGGGTGACTCTCTGTAAATGTTTGAATTATGATCCAGCAAGTCGTCCACTAGTGATTGATGTTATGATTTGCATTAGGGAACTGATTATTAAACCTCAATATGATATCATGGCCGGTTTGGAGAGACCGGTTAAGGAGAACAGCACAAGTTGTTGCTTGATTCTGGGGGAGCTCTGTCAGATGCCCAAGAAAATGTCAGAAACACAGAAAGAACATGAGTTGCAGGGAAAAGAAGTTGGTGGAGGAGCAGACTTTGATCAGGTTGATGAGGGGAGGTCTGAGAATGGTTTTGTTGATGGACTCGCAGAGGGAAAGGTCAAATCTAAAGTTCTGCAGGGCCATCGTGACTCTATTACAGCATTAGCTGTTGGAGGAGAATTTCTATTTAGCTCCTCATTTGACAAAACCATCCATGTGTGGTCTTTGCAGGACTTCTGTCATGTACATACATTTAAAGGCCATGAGCATACCATTAAGGCTCTAATTTATGTAGATGAAGAGAAACCCTTGTGCATAAGTGGTGACAGTGGAGGTGGCATATTTATCTGGAGCACATGTTCCCCTCTTGGGCAAGAACCATTAAAGATACTGTATGAGCAGAAAGATTGGCGCTTTAGTGGTATTCATGCCTTGGCCTTTAGAACTGGATATATTTATACCGGCAGTGGAGACAGAACAGTAAAAGCATGGTCTATGCAGGATGGCACCATATCATGCACTATGTCTGGTCATAAATCAGTAGTTTCAACACTTGCAGTTTGTGATAGTGTTCTGTATAGTGGCAGTTGGGATGGAACCATCCGATTATGGAGTCTCAGCGATCACAGTCCTTTGGCAGTACTAGGGGAAGACACATCTGGAACTGTGGTTTCTGTCTTATCTCTTGCTGCTGACAGACATGTGCTCATTGCAACCCATGAAAATGGATGTCTAAAGGTCTGGAGAAATGATGTGTTTATGAAATCCATTAAAATGCACAATGGTGCAGTATTTGCTACTGGCCTGGATGGAAAATGGCTTTTCACAGGAGGGTTGGATAAAACTGTCAATGTCCAGGAATGGTCTGGTGATGAGTTTCAAACCGATTTCAGACCTATTGGATCCATCCCCTGTGATTCTGTCATTACTACTTTGTTGTGCTGGCAAGGAAAGCTTTTCGTTGGATATGCTAATAGGAATATCATGGTGTTTTACTATGGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

818

Amino Acids

90.48

Weight (kDa)

5.26

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_UBOX PF13445 9 - 51 6.6e-07 RING-type zinc-finger
WDR55 PF24796 519 - 731 4.6e-13 WDR55
WD40_Gbeta PF25391 525 - 687 2.5e-08 G protein beta WD-40 repeat protein
Beta-prop_SCAP PF24017 526 - 601 1.7e-06 SCAP Beta-propeller
Beta-prop_WDR3_1st PF25173 527 - 594 2.7e-08 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 528 - 746 6.1e-24 WDR5 beta-propeller domain
WD40_Prp19 PF24814 623 - 767 3.9e-09 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 631 - 691 7.4e-06 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 632 - 747 1.5e-06 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 633 - 796 1.8e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 634 - 768 5.4e-14 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 634 - 731 6.8e-08 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 634 - 695 4.8e-08 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 188, 1955
AccI GTMKAC 1 cut(s) 59
AccII CGCG 6 cut(s) 56, 70, 72, 197, 302, 331
AclWI GGATC 4 cut(s) 269, 1277, 2346, 2359
AcoI YGGCCR 3 cut(s) 85, 847, 1362
AcsI RAATTY 3 cut(s) 320, 488, 1628
AcuI CTGAAG 1 cut(s) 966
AcyI GRCGYC 2 cut(s) 189, 387
AfaI GTAC 4 cut(s) 160, 176, 1695, 2091
AfiI CCNNNNNNNGG 3 cut(s) 133, 185, 1818
AflIII ACRYGT 2 cut(s) 1805, 2149
AgeI ACCGGT 1 cut(s) 1378
AgsI TTSAA 9 cut(s) 455, 868, 979, 1024, 1179, 1199, 1276, 1998, 2330
AhdI GACNNNNNGTC 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 1300
AjiI CACGTC 1 cut(s) 290
AjnI CCWGG 3 cut(s) 108, 2253, 2304
AjuI GAANNNNNNNTTGG 4 cut(s) 860, 880, 892, 912
AleI CACNNNNGTG 1 cut(s) 2232
AloI GAACNNNNNNTCC 2 cut(s) 1792, 1824
Alw21I GWGCWC 4 cut(s) 1058, 1425, 1805, 2157
Alw26I GTCTC 5 cut(s) 41, 131, 1369, 1914, 2069
AlwI GGATC 4 cut(s) 269, 1277, 2346, 2359
AoxI GGCC 7 cut(s) 85, 847, 1362, 1588, 1708, 1884, 2251
ApeKI GCWGC 5 cut(s) 118, 147, 199, 437, 2138
ApoI RAATTY 3 cut(s) 320, 488, 1628
AsiGI ACCGGT 1 cut(s) 1378
Asp700I GAANNNNTTC 1 cut(s) 1133
AspLEI GCGC 5 cut(s) 56, 72, 191, 199, 1863
AspS9I GGNCC 2 cut(s) 339, 1588
AsuC2I CCSGG 3 cut(s) 134, 152, 280
AsuHPI GGTGA 7 cut(s) 491, 787, 892, 1220, 1267, 1784, 2330
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 849
BamHI GGATCC 1 cut(s) 2351
BanI GGYRCC 2 cut(s) 188, 1955
BanII GRGCYC 3 cut(s) 418, 1058, 1425
BbsI GAAGAC 1 cut(s) 2106
Bbv12I GWGCWC 4 cut(s) 1058, 1425, 1805, 2157
BbvI GCAGC 5 cut(s) 105, 134, 186, 424, 2125
BceAI ACGGC 3 cut(s) 67, 202, 374
BcgI CGANNNNNNTGC 2 cut(s) 1574, 1608
BciT130I CCWGG 3 cut(s) 110, 2255, 2306
BclI TGATCA 1 cut(s) 1507
BcnI CCSGG 3 cut(s) 134, 152, 280
BcoDI GTCTC 5 cut(s) 41, 131, 1369, 1914, 2069
BcuI ACTAGT 1 cut(s) 1300
BfaI CTAG 3 cut(s) 167, 1301, 2093
BfmI CTRYAG 1 cut(s) 1583
BfoI RGCGCY 2 cut(s) 192, 1864
BmcAI AGTACT 1 cut(s) 2091
Bme1390I CCNGG 6 cut(s) 110, 134, 152, 280, 2255, 2306
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 339, 1588
BmiI GGNNCC 4 cut(s) 190, 1957, 2047, 2353
BmrFI CCNGG 6 cut(s) 110, 134, 152, 280, 2255, 2306
BmrI ACTGGG 2 cut(s) 23, 379
BmsI GCATC 2 cut(s) 1253, 1422
BmuI ACTGGG 2 cut(s) 23, 379
BoxI GACNNNNGTC 1 cut(s) 1686
BpiI GAAGAC 1 cut(s) 2106
BplI GAGNNNNNCTC 2 cut(s) 1243, 1275
BpmI CTGGAG 2 cut(s) 1819, 2212
BpuMI CCSGG 3 cut(s) 134, 152, 280
BsaHI GRCGYC 2 cut(s) 189, 387
BsaI GGTCTC 1 cut(s) 1369
BsaJI CCNNGG 4 cut(s) 278, 300, 329, 1881
BsaWI WCCGGW 2 cut(s) 10, 1378
BsaXI ACNNNNNCTCC 6 cut(s) 577, 607, 995, 1025, 1792, 1822
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 185, 1818
Bse118I RCCGGY 3 cut(s) 1364, 1378, 1910
Bse1I ACTGG 4 cut(s) 29, 374, 1900, 2254
Bse3DI GCAATG 2 cut(s) 1035, 2157
BseBI CCWGG 3 cut(s) 110, 2255, 2306
BseDI CCNNGG 4 cut(s) 278, 300, 329, 1881
BseLI CCNNNNNNNGG 3 cut(s) 133, 185, 1818
BseMI GCAATG 2 cut(s) 1035, 2157
BseMII CTCAG 7 cut(s) 176, 194, 563, 1126, 1241, 1521, 2080
BseNI ACTGG 4 cut(s) 29, 374, 1900, 2254
BseRI GAGGAG 8 cut(s) 209, 557, 560, 565, 698, 1509, 1633, 1638
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 5 cut(s) 105, 134, 186, 424, 2125
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 2256
Bsh1236I CGCG 6 cut(s) 56, 70, 72, 197, 302, 331
BshFI GGCC 7 cut(s) 87, 849, 1364, 1590, 1710, 1886, 2253
BshNI GGYRCC 2 cut(s) 188, 1955
BshTI ACCGGT 1 cut(s) 1378
BsiHKAI GWGCWC 4 cut(s) 1058, 1425, 1805, 2157
BsiSI CCGG 8 cut(s) 11, 20, 134, 152, 280, 1365, 1379, 1911
BslI CCNNNNNNNGG 3 cut(s) 133, 185, 1818
BsmAI GTCTC 5 cut(s) 41, 131, 1369, 1914, 2069
BsmBI CGTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 787
BsnI GGCC 7 cut(s) 87, 849, 1364, 1590, 1710, 1886, 2253
Bso31I GGTCTC 1 cut(s) 1369
Bsp1286I GDGCHC 6 cut(s) 29, 418, 1058, 1425, 1805, 2157
Bsp1407I TGTACA 1 cut(s) 1693
Bsp143I GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
BspANI GGCC 7 cut(s) 87, 849, 1364, 1590, 1710, 1886, 2253
BspCNI CTCAG 7 cut(s) 175, 193, 564, 1125, 1242, 1522, 2079
BspFNI CGCG 6 cut(s) 56, 70, 72, 197, 302, 331
BspLI GGNNCC 4 cut(s) 190, 1957, 2047, 2353
BspMAI CTGCAG 1 cut(s) 1587
BspPI GGATC 4 cut(s) 269, 1277, 2346, 2359
BspT107I GGYRCC 2 cut(s) 188, 1955
BspTNI GGTCTC 1 cut(s) 1369
BsrDI GCAATG 2 cut(s) 1035, 2157
BsrFI RCCGGY 3 cut(s) 1364, 1378, 1910
BsrGI TGTACA 1 cut(s) 1693
BsrI ACTGG 4 cut(s) 29, 374, 1900, 2254
BssAI RCCGGY 3 cut(s) 1364, 1378, 1910
BssECI CCNNGG 4 cut(s) 278, 300, 329, 1881
BssMI GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
BssNI GRCGYC 2 cut(s) 189, 387
BssT1I CCWWGG 1 cut(s) 1881
Bst2UI CCWGG 3 cut(s) 110, 2255, 2306
Bst4CI ACNGT 7 cut(s) 1223, 1778, 1842, 1930, 2078, 2116, 2296
Bst6I CTCTTC 2 cut(s) 1137, 1743
BstACI GRCGYC 2 cut(s) 189, 387
BstAPI GCANNNNNTGC 1 cut(s) 2243
BstAUI TGTACA 1 cut(s) 1693
BstC8I GCNNGC 3 cut(s) 74, 97, 2393
BstDEI CTNAG 7 cut(s) 162, 180, 572, 1112, 1250, 1530, 2066
BstDSI CCRYGG 2 cut(s) 300, 329
BstFNI CGCG 6 cut(s) 56, 70, 72, 197, 302, 331
BstH2I RGCGCY 2 cut(s) 192, 1864
BstHHI GCGC 5 cut(s) 56, 72, 191, 199, 1863
BstKTI GATC 6 cut(s) 277, 1174, 1285, 1510, 2074, 2354
BstMAI GTCTC 5 cut(s) 41, 131, 1369, 1914, 2069
BstMBI GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
BstMWI GCNNNNNNNGC 5 cut(s) 105, 292, 1117, 2243, 2401
BstNI CCWGG 3 cut(s) 110, 2255, 2306
BstNSI RCATGY 2 cut(s) 1809, 2153
BstPAI GACNNNNGTC 1 cut(s) 1686
BstSCI CCNGG 6 cut(s) 108, 132, 150, 278, 2253, 2304
BstSFI CTRYAG 1 cut(s) 1583
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 6 cut(s) 56, 70, 72, 197, 302, 331
BstV1I GCAGC 5 cut(s) 105, 134, 186, 424, 2125
BstV2I GAAGAC 1 cut(s) 2106
BstX2I RGATCY 1 cut(s) 2351
BstXI CCANNNNNNTGG 1 cut(s) 2174
BstYI RGATCY 1 cut(s) 2351
BsuRI GGCC 7 cut(s) 87, 849, 1364, 1590, 1710, 1886, 2253
BtgI CCRYGG 2 cut(s) 300, 329
BtrI CACGTC 1 cut(s) 290
BtsI GCAGTG 3 cut(s) 596, 1047, 1921
BtsIMutI CAGTG 7 cut(s) 36, 596, 1047, 1144, 1247, 1783, 1921
Cac8I GCNNGC 3 cut(s) 74, 97, 2393
CfoI GCGC 5 cut(s) 56, 72, 191, 199, 1863
Cfr10I RCCGGY 3 cut(s) 1364, 1378, 1910
Cfr13I GGNCC 2 cut(s) 339, 1588
Cfr42I CCGCGG 2 cut(s) 303, 332
CseI GACGC 2 cut(s) 45, 395
Csp6I GTAC 4 cut(s) 159, 175, 1694, 2090
CspAI ACCGGT 1 cut(s) 1378
CviQI GTAC 4 cut(s) 159, 175, 1694, 2090
DdeI CTNAG 7 cut(s) 162, 180, 572, 1112, 1250, 1530, 2066
DinI GGCGCC 1 cut(s) 190
DpnI GATC 6 cut(s) 276, 1173, 1284, 1509, 2073, 2353
DpnII GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
DraI TTTAAA 2 cut(s) 319, 1705
DriI GACNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 3 cut(s) 85, 847, 1362
Eam1104I CTCTTC 2 cut(s) 1137, 1743
Eam1105I GACNNNNNGTC 1 cut(s) 55
EarI CTCTTC 2 cut(s) 1137, 1743
EciI GGCGGA 1 cut(s) 234
Ecl136II GAGCTC 2 cut(s) 1056, 1423
Eco130I CCWWGG 1 cut(s) 1881
Eco24I GRGCYC 3 cut(s) 418, 1058, 1425
Eco31I GGTCTC 1 cut(s) 1369
Eco32I GATATC 1 cut(s) 1357
Eco47I GGWCC 1 cut(s) 339
Eco53kI GAGCTC 2 cut(s) 1056, 1423
Eco57I CTGAAG 1 cut(s) 966
EcoICRI GAGCTC 2 cut(s) 1056, 1423
EcoRII CCWGG 3 cut(s) 108, 2253, 2304
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 1 cut(s) 1881
EcoT22I ATGCAT 1 cut(s) 1246
EcoT38I GRGCYC 3 cut(s) 418, 1058, 1425
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 1881
Esp3I CGTCTC 1 cut(s) 131
FalI AAGNNNNNCTT 2 cut(s) 2388, 2420
FbaI TGATCA 1 cut(s) 1507
FblI GTMKAC 1 cut(s) 59
FriOI GRGCYC 3 cut(s) 418, 1058, 1425
FspBI CTAG 3 cut(s) 167, 1301, 2093
GlaI GCGC 5 cut(s) 55, 71, 190, 198, 1862
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 2 cut(s) 1819, 2212
HaeII RGCGCY 2 cut(s) 192, 1864
HaeIII GGCC 7 cut(s) 87, 849, 1364, 1590, 1710, 1886, 2253
HapII CCGG 8 cut(s) 11, 20, 134, 152, 280, 1365, 1379, 1911
HgaI GACGC 2 cut(s) 45, 395
HhaI GCGC 5 cut(s) 56, 72, 191, 199, 1863
Hin1I GRCGYC 2 cut(s) 189, 387
Hin6I GCGC 5 cut(s) 54, 70, 189, 197, 1861
HinP1I GCGC 5 cut(s) 54, 70, 189, 197, 1861
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 2402
HpaII CCGG 8 cut(s) 11, 20, 134, 152, 280, 1365, 1379, 1911
HphI GGTGA 7 cut(s) 491, 787, 892, 1220, 1267, 1784, 2330
Hpy166II GTNNAC 3 cut(s) 60, 159, 1298
Hpy188III TCNNGA 4 cut(s) 1595, 1798, 2109, 2191
Hpy8I GTNNAC 3 cut(s) 60, 159, 1298
Hpy99I CGWCG 5 cut(s) 53, 61, 64, 275, 347
HpyAV CCTTC 4 cut(s) 358, 601, 882, 886
HpyCH4III ACNGT 7 cut(s) 1223, 1778, 1842, 1930, 2078, 2116, 2296
HpyCH4IV ACGT 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 292, 1117, 2243, 2401
HpyF3I CTNAG 7 cut(s) 162, 180, 572, 1112, 1250, 1530, 2066
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 2 cut(s) 189, 387
HspAI GCGC 5 cut(s) 54, 70, 189, 197, 1861
KasI GGCGCC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 1507
KspI CCGCGG 2 cut(s) 303, 332
Kzo9I GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
LmnI GCTCC 5 cut(s) 4, 1420, 1496, 1646, 1800
Lsp1109I GCAGC 5 cut(s) 105, 134, 186, 424, 2125
LweI GCATC 2 cut(s) 1253, 1422
MaeI CTAG 3 cut(s) 167, 1301, 2093
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 3 cut(s) 1255, 1595, 1772
MalI GATC 6 cut(s) 276, 1173, 1284, 1509, 2073, 2353
MboI GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
MboII GAAGA 8 cut(s) 320, 419, 647, 959, 1036, 1154, 1760, 2111
MflI RGATCY 1 cut(s) 2351
MhlI GDGCHC 6 cut(s) 29, 418, 1058, 1425, 1805, 2157
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 8 cut(s) 265, 320, 488, 557, 936, 1276, 1628, 1734
MluNI TGGCCA 1 cut(s) 849
Mly113I GGCGCC 1 cut(s) 189
MlyI GAGTC 4 cut(s) 1252, 1545, 1592, 2071
MmeI TCCRAC 6 cut(s) 294, 366, 1172, 1600, 2265, 2392
Mox20I TGGCCA 1 cut(s) 849
Mph1103I ATGCAT 1 cut(s) 1246
MroXI GAANNNNTTC 1 cut(s) 1133
MscI TGGCCA 1 cut(s) 849
MseI TTAA 7 cut(s) 318, 1341, 1383, 1704, 1725, 1832, 2220
MslI CAYNNNNRTG 6 cut(s) 1004, 1040, 1664, 2172, 2222, 2232
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 2 cut(s) 302, 331
MspI CCGG 8 cut(s) 11, 20, 134, 152, 280, 1365, 1379, 1911
MspR9I CCNGG 6 cut(s) 110, 134, 152, 280, 2255, 2306
Mva1269I GAATGC 1 cut(s) 787
MvaI CCWGG 3 cut(s) 110, 2255, 2306
MvnI CGCG 6 cut(s) 56, 70, 72, 197, 302, 331
MwoI GCNNNNNNNGC 5 cut(s) 105, 292, 1117, 2243, 2401
NarI GGCGCC 1 cut(s) 189
NciI CCSGG 3 cut(s) 134, 152, 280
NdeII GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
NlaIV GGNNCC 4 cut(s) 190, 1957, 2047, 2353
NmeAIII GCCGAG 2 cut(s) 71, 397
NmuCI GTSAC 3 cut(s) 1255, 1595, 1772
NsiI ATGCAT 1 cut(s) 1246
NspI RCATGY 2 cut(s) 1809, 2153
OliI CACNNNNGTG 1 cut(s) 2232
PciI ACATGT 2 cut(s) 1805, 2149
PctI GAATGC 1 cut(s) 787
PdmI GAANNNNTTC 1 cut(s) 1133
PfeI GAWTC 8 cut(s) 64, 142, 428, 482, 834, 1159, 1411, 2366
PflFI GACNNNGTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 2304
PinAI ACCGGT 1 cut(s) 1378
PleI GAGTC 4 cut(s) 1252, 1545, 1592, 2070
PluTI GGCGCC 1 cut(s) 192
PpsI GAGTC 4 cut(s) 1252, 1545, 1592, 2070
PscI ACATGT 2 cut(s) 1805, 2149
PshAI GACNNNNGTC 1 cut(s) 1686
Psp124BI GAGCTC 2 cut(s) 1058, 1425
Psp6I CCWGG 3 cut(s) 108, 2253, 2304
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 3 cut(s) 108, 2253, 2304
PspN4I GGNNCC 4 cut(s) 190, 1957, 2047, 2353
PspPI GGNCC 2 cut(s) 339, 1588
PsrI GAACNNNNNNTAC 2 cut(s) 1216, 1248
PstI CTGCAG 1 cut(s) 1587
PsuI RGATCY 1 cut(s) 2351
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 4 cut(s) 160, 176, 1695, 2091
RsaNI GTAC 4 cut(s) 159, 175, 1694, 2090
RseI CAYNNNNRTG 6 cut(s) 1004, 1040, 1664, 2172, 2222, 2232
SacI GAGCTC 2 cut(s) 1058, 1425
SacII CCGCGG 2 cut(s) 303, 332
SalI GTCGAC 1 cut(s) 58
SaqAI TTAA 7 cut(s) 318, 1341, 1383, 1704, 1725, 1832, 2220
Sau3AI GATC 6 cut(s) 274, 1171, 1282, 1507, 2071, 2351
Sau96I GGNCC 2 cut(s) 339, 1588
ScaI AGTACT 1 cut(s) 2091
SchI GAGTC 4 cut(s) 1252, 1545, 1592, 2071
ScrFI CCNGG 6 cut(s) 110, 134, 152, 280, 2255, 2306
SduI GDGCHC 6 cut(s) 29, 418, 1058, 1425, 1805, 2157
SfaNI GCATC 2 cut(s) 1253, 1422
SfcI CTRYAG 1 cut(s) 1583
SfoI GGCGCC 1 cut(s) 190
Sfr303I CCGCGG 2 cut(s) 303, 332
SgrBI CCGCGG 2 cut(s) 303, 332
SgrDI CGTCGACG 1 cut(s) 58
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 6 cut(s) 1004, 1040, 1664, 2172, 2222, 2232
SpeI ACTAGT 1 cut(s) 1300
Sse9I AATT 8 cut(s) 265, 320, 488, 557, 936, 1276, 1628, 1734
SspDI GGCGCC 1 cut(s) 188
SspMI CTAG 3 cut(s) 167, 1301, 2093
SstI GAGCTC 2 cut(s) 1058, 1425
StyD4I CCNGG 6 cut(s) 108, 132, 150, 278, 2253, 2304
StyI CCWWGG 1 cut(s) 1881
TaaI ACNGT 7 cut(s) 1223, 1778, 1842, 1930, 2078, 2116, 2296
TaiI ACGT 1 cut(s) 292
TaqI TCGA 5 cut(s) 59, 213, 399, 837, 1058
TasI AATT 8 cut(s) 265, 320, 488, 557, 936, 1276, 1628, 1734
TatI WGTACW 3 cut(s) 158, 1693, 2089
TauI GCSGC 6 cut(s) 87, 194, 197, 250, 331, 334
TfiI GAWTC 8 cut(s) 64, 142, 428, 482, 834, 1159, 1411, 2366
Tru1I TTAA 7 cut(s) 318, 1341, 1383, 1704, 1725, 1832, 2220
Tru9I TTAA 7 cut(s) 318, 1341, 1383, 1704, 1725, 1832, 2220
TscAI CASTG 7 cut(s) 36, 596, 1047, 1144, 1254, 1783, 1921
TseFI GTSAC 3 cut(s) 1255, 1595, 1772
TseI GCWGC 5 cut(s) 118, 147, 199, 437, 2138
Tsp45I GTSAC 3 cut(s) 1255, 1595, 1772
TspDTI ATGAA 7 cut(s) 321, 533, 1172, 1761, 1865, 2184, 2225
TspRI CASTG 7 cut(s) 36, 596, 1047, 1144, 1254, 1783, 1921
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 3 cut(s) 320, 488, 1628
XceI RCATGY 2 cut(s) 1809, 2153
XcmI CCANNNNNNNNNTGG 1 cut(s) 2312
XmiI GTMKAC 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 1133
XspI CTAG 3 cut(s) 167, 1301, 2093
ZrmI AGTACT 1 cut(s) 2091
Zsp2I ATGCAT 1 cut(s) 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.