Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005362

Physical Location & Seq

Genomic Coordinates Forward (+)

18360286 .. 18363574

Gene Structure 3289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032729

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAACAAGGCCCGCCTCAAGGGGTCATTCTCAAAGCTATTTCAGCTGATGGGTTCGTCAACACCATGGGTTACTGAACCAAGGAGTTTGAATTGGGAATTTTTTGACCATGACCTGATTGTTGTGAGGATTAAGGAGAATGATTCTGATATCACTCCTTCAAATGCCAATTCAAGTGAAGATAGGATACTACTGCTCATGTTGCACTGGGAGTTTCTGATTTGGGTTTCGTGCTTGGAAAGCTATAATGAAGAAACTAATGGCCTTCTGGCTGTAGAGAACCAGAAATTGCAAATTCAGGAGAGTTTTGAGATGGATTTGGGAACAAGGGTAAGCCTGTATCGGAATGTTGTTGAAGTATATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

123

Amino Acids

14.28

Weight (kDa)

4.72

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59540 AT1G59540
fragaria_vesca	FvH4_2g32710 FvH4_2g32710 FvH4_2g32710 FvH4_2g32710 FvH4_2g32710
malus_domestica	MD07G1107700.v1.1 MD08G1078700.v1.1 MD15G1065700.v1.1
prunus_persica	Prupe.1G419600_v2.0.a1 Prupe.1G419600_v2.0.a1
pyrus_communis	pycom08g06510 pycom15g06210 pycom16g20420
rosa_chinensis	RchiOBHm_Chr6g0309971
rosa_laevigata	RLG00000010520 RLG00000032729
rosa_multiflora	Rmu_sc0000294.1_g000009 Rmu_sc0000507.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158990 Rroxscaffold_7G00202540
rosa_rugosa	Rorug06G0376300 Rorug06G0376400.1
rosa_samantha	Rh6AG490200 Rh6BG499700 Rh6CG504500 Rh6DG490600
rosa_wichuraiana	Rw6G042670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	98, 294
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	91, 162, 174, 356
AluBI	AGCT	3 cut(s)	37, 46, 243
AluI	AGCT	3 cut(s)	37, 46, 243
AoxI	GGCC	2 cut(s)	9, 262
ApoI	RAATTY	2 cut(s)	98, 294
AspS9I	GGNCC	1 cut(s)	10
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BccI	CCATC	2 cut(s)	43, 307
BciVI	GTATCC	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	10
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	65, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	65, 80
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	11, 264
BslI	CCNNNNNNNGG	1 cut(s)	19
BsnI	GGCC	2 cut(s)	11, 264
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	11, 264
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	65, 80
BssT1I	CCWWGG	2 cut(s)	65, 80
BstC8I	GCNNGC	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 202, 240
BstSFI	CTRYAG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	11, 264
BtgI	CCRYGG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	10
CviAII	CATG	3 cut(s)	66, 110, 199
CviJI	RGCY	7 cut(s)	11, 37, 46, 243, 264, 272, 336
CviKI_1	RGCY	7 cut(s)	11, 37, 46, 243, 264, 272, 336
Eco130I	CCWWGG	2 cut(s)	65, 80
Eco32I	GATATC	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	65, 80
ErhI	CCWWGG	2 cut(s)	65, 80
FaeI	CATG	3 cut(s)	69, 113, 202
FaiI	YATR	6 cut(s)	67, 111, 200, 246, 361, 363
FatI	CATG	3 cut(s)	65, 109, 198
FauI	CCCGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	11, 264
Hin1II	CATG	3 cut(s)	69, 113, 202
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	148, 219, 345
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	168, 275
HpyCH4V	TGCA	2 cut(s)	205, 292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 202, 240
Hsp92II	CATG	3 cut(s)	69, 113, 202
LpnPI	CCDG	6 cut(s)	128, 193, 254, 284, 296, 350
MaeIII	GTNAC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	191, 263
MluCI	AATT	5 cut(s)	91, 98, 169, 287, 294
MnlI	CCTC	2 cut(s)	26, 120
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	43, 202, 240
NcoI	CCATGG	1 cut(s)	65
NlaIII	CATG	3 cut(s)	69, 113, 202
PfeI	GAWTC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	4 cut(s)	39, 48, 117, 245
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	5 cut(s)	91, 98, 169, 287, 294
SsiI	CCGC	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	65, 80
TasI	AATT	5 cut(s)	91, 98, 169, 287, 294
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	17, 264
TspRI	CASTG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	98, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.