pycom16g20610

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011255
Physical Location & Seq
Reverse (-)
18406617 .. 18406962
346 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGCCCCTGAAATCTGAGACCCAGCCTCCATCCACCGGCACCGGTACCGGTACCACGCCCTCCGACCCATCCAACGCCTCAATCGACCCAATTCTCCTCGTCCTTCGAATCCTCCCCTACAGCTTCCTCCGCCCCCCCCGACTTCGCCTCAAGCTCCCAACCCTAACCCTCCCCTCACCCATGACCGTCTACGCCCTCGTCCTCCTCACCTACTTCATGGTTGTCTCCGGCATCGTCTACGACGTCATCGTCGAGCCCCCGGGCATCGGATCAACTCAGGACGGCCTCACAGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

100

Amino Acids

10.55

Weight (kDa)

6.03

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 246
Acc65I GGTACC 2 cut(s) 44, 50
AccB1I GGYRCC 3 cut(s) 38, 44, 50
AccI GTMKAC 2 cut(s) 189, 237
AciI CCGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 3 cut(s) 46, 52, 295
AfiI CCNNNNNNNGG 2 cut(s) 35, 266
AgeI ACCGGT 2 cut(s) 41, 47
AluBI AGCT 2 cut(s) 123, 154
AluI AGCT 2 cut(s) 123, 154
Alw26I GTCTC 2 cut(s) 11, 229
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 283
AsiGI ACCGGT 2 cut(s) 41, 47
Asp718I GGTACC 2 cut(s) 44, 50
AsuC2I CCSGG 2 cut(s) 260, 261
AsuHPI GGTGA 2 cut(s) 168, 199
AsuII TTCGAA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 259
BanI GGYRCC 3 cut(s) 38, 44, 50
BanII GRGCYC 1 cut(s) 258
BccI CCATC 2 cut(s) 37, 76
BceAI ACGGC 1 cut(s) 298
BcnI CCSGG 2 cut(s) 260, 261
BcoDI GTCTC 2 cut(s) 11, 229
BfmI CTRYAG 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 260, 261
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 3 cut(s) 40, 46, 52
BmrFI CCNGG 2 cut(s) 260, 261
BmsI GCATC 2 cut(s) 240, 273
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 2 cut(s) 260, 261
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 258, 259
BsaWI WCCGGW 2 cut(s) 41, 47
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 266
Bse118I RCCGGY 3 cut(s) 35, 41, 47
BseDI CCNNGG 2 cut(s) 258, 259
BseGI GGATG 2 cut(s) 29, 68
BseLI CCNNNNNNNGG 2 cut(s) 35, 266
BseMII CTCAG 2 cut(s) 6, 290
BseRI GAGGAG 2 cut(s) 86, 194
BseYI CCCAGC 1 cut(s) 21
BshFI GGCC 1 cut(s) 285
BshNI GGYRCC 3 cut(s) 38, 44, 50
BshTI ACCGGT 2 cut(s) 41, 47
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 5 cut(s) 36, 42, 48, 228, 260
BslI CCNNNNNNNGG 2 cut(s) 35, 266
BsmAI GTCTC 2 cut(s) 11, 229
BsnI GGCC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 1 cut(s) 130
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 7, 289
BspLI GGNNCC 3 cut(s) 40, 46, 52
BspPI GGATC 1 cut(s) 277
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 3 cut(s) 38, 44, 50
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 3 cut(s) 35, 41, 47
BssAI RCCGGY 3 cut(s) 35, 41, 47
BssECI CCNNGG 2 cut(s) 258, 259
BssMI GATC 1 cut(s) 269
BssNI GRCGYC 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 15, 276
BstF5I GGATG 2 cut(s) 29, 68
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 11, 229
BstMBI GATC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 258, 259
BstSFI CTRYAG 1 cut(s) 118
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 2 cut(s) 29, 68
Cfr10I RCCGGY 3 cut(s) 35, 41, 47
Cfr9I CCCGGG 1 cut(s) 259
Csp6I GTAC 3 cut(s) 45, 51, 294
CspAI ACCGGT 2 cut(s) 41, 47
CviAII CATG 2 cut(s) 181, 217
CviJI RGCY 5 cut(s) 25, 123, 154, 256, 285
CviKI_1 RGCY 5 cut(s) 25, 123, 154, 256, 285
CviQI GTAC 3 cut(s) 45, 51, 294
DdeI CTNAG 2 cut(s) 15, 276
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 2 cut(s) 184, 220
FaiI YATR 3 cut(s) 182, 218, 298
FatI CATG 2 cut(s) 180, 216
FblI GTMKAC 2 cut(s) 189, 237
FokI GGATG 2 cut(s) 16, 55
FriOI GRGCYC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 285
HapII CCGG 5 cut(s) 36, 42, 48, 228, 260
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 2 cut(s) 184, 220
HinfI GANTC 1 cut(s) 108
HpaII CCGG 5 cut(s) 36, 42, 48, 228, 260
HphI GGTGA 2 cut(s) 168, 199
Hpy166II GTNNAC 2 cut(s) 190, 238
Hpy188I TCNGA 3 cut(s) 16, 64, 269
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 2 cut(s) 190, 238
Hpy99I CGWCG 2 cut(s) 245, 254
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 15, 276
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 184, 220
KpnI GGTACC 2 cut(s) 48, 54
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 9 cut(s) 20, 35, 49, 55, 61, 241, 263, 273, 276
LweI GCATC 2 cut(s) 240, 273
MaeII ACGT 1 cut(s) 243
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 87, 96
MspI CCGG 5 cut(s) 36, 42, 48, 228, 260
MspR9I CCNGG 2 cut(s) 260, 261
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 2 cut(s) 260, 261
NdeII GATC 1 cut(s) 269
NlaIII CATG 2 cut(s) 184, 220
NlaIV GGNNCC 3 cut(s) 40, 46, 52
NspV TTCGAA 1 cut(s) 106
PcsI WCGNNNNNNNCGW 4 cut(s) 81, 240, 246, 249
PfeI GAWTC 1 cut(s) 108
PinAI ACCGGT 2 cut(s) 41, 47
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 40, 46, 52
RsaI GTAC 3 cut(s) 46, 52, 295
RsaNI GTAC 3 cut(s) 45, 51, 294
Sau3AI GATC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 260, 261
SduI GDGCHC 1 cut(s) 258
SetI ASST 5 cut(s) 125, 156, 212, 246, 295
SfaNI GCATC 2 cut(s) 240, 273
SfcI CTRYAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 106
SmaI CCCGGG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 130
StyD4I CCNGG 2 cut(s) 258, 259
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 84, 106, 252
TasI AATT 1 cut(s) 90
TfiI GAWTC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 205
TspMI CCCGGG 1 cut(s) 259
XmaI CCCGGG 1 cut(s) 259
XmiI GTMKAC 2 cut(s) 189, 237
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.