pycom16g20620

Oligosaccharyltransferase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011255
Physical Location & Seq
Forward (+)
18409297 .. 18410550
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGATACTAATTTACCAATTGGTGCTAGGTAAATTGTTGTATTATACGTCCTTAAAAAAAAAAAAAAACATTAAGATAGCACTAAATTACTATATAAATAATATATATATAGCCCCGAGTTTGAAATATATAACCTTCCATCGGGAGAGATTATTTTATAAAACTTTAAAGAAACTTCGGAATTCTAAAATGACTATATCCACTGCATTTCCAACCCCATATAAAGCCCTCACTGGATGCTCTTACAGACTCACCACACCAAACCCACCCTCCCAGAACCCCCAGACCCAAATCCCCACCGCAATGACCACGCCCTCCGACCCATCTACCGCCTCCGTCGACCCAATTCTCCTCATCCTTCGGATCCTCCCCTACAGCTTCCTCCGCCCCCCTCGACTCCGCCTCAAGCTCCCAACCCTAACCCTCCCCTCACCCATGACCGTCTACGCCCTCGTCCTCCTCACCTACTTCATGGTTGTCTCCGGCATCGTCTACGACGTCATCGTCGAGCCCCCGGGCATCGGATCAACTCAGGACCGCCTCACAGGGTCGATCCGACCCGTCGTCTTCCTCCCCGGCCGGGTCAACGGGCAGTACATAATCGAAGGTCTGTCGTCCGGGGACTTGGCTCTGGATCGGAATCGGGCTAAAAGTGTGAAGGTGTCGTATGCCACTGCTGGGATCTCCTCTGTCGTTCTCGCCTATGTTATGAGTATGCTGTTTATTCGGATCGATCCCAGTTTCAATTTCCATTGCGGACCTCAATTATGGTTTAATTTAGACATGTTGGTTCGTGATTCGTCCTGTTTTCTTGCATGTTTGTTGAGTGAAGAATCATGCTTTATGTTTATGTGCTTTCATAACAGTGATGTCTGCCCTGCTGCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST3_OST6

Protein Analysis

297

Amino Acids

33.25

Weight (kDa)

9.56

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19340 AT2G19340 AT4G29870
fragaria_vesca FvH4_4g06900
malus_domestica MD16G1244900.v1.1 MD16G1245000.v1.1
prunus_persica Prupe.1G072000_v2.0.a1
pyrus_communis pycom16g20610 pycom16g20620
rosa_chinensis RchiOBHm_Chr4g0398801
rosa_laevigata RLG00000009320
rosa_multiflora Rmu_co8164006.1_g000001 Rmu_sc0000458.1_g000018
rosa_roxburghii Rroxscaffold_5G00343760
rosa_rugosa Rorug04G0011900
rosa_samantha Rh4AG089500 Rh4BG087000 Rh4CG097600 Rh4DG081300
rosa_wichuraiana Rw4G007400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AasI GACNNNNNNGTC 1 cut(s) 503
AatII GACGTC 1 cut(s) 501
AccI GTMKAC 3 cut(s) 339, 444, 492
AciI CCGC 6 cut(s) 300, 330, 385, 400, 538, 756
AclWI GGATC 8 cut(s) 358, 371, 532, 547, 642, 689, 728, 737
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 4 cut(s) 141, 521, 580, 678
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 2 cut(s) 124, 745
AhdI GACNNNNNGTC 1 cut(s) 563
AluBI AGCT 2 cut(s) 378, 409
AluI AGCT 2 cut(s) 378, 409
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 8 cut(s) 358, 371, 532, 547, 642, 689, 728, 737
Ama87I CYCGRG 2 cut(s) 115, 514
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 535, 758
AsuC2I CCSGG 5 cut(s) 515, 516, 576, 581, 619
AsuHPI GGTGA 3 cut(s) 244, 423, 454
AvaI CYCGRG 2 cut(s) 115, 514
AvaII GGWCC 2 cut(s) 535, 758
BamHI GGATCC 1 cut(s) 363
BanII GRGCYC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 559
BbvI GCAGC 1 cut(s) 868
BccI CCATC 2 cut(s) 147, 331
BcnI CCSGG 5 cut(s) 515, 516, 576, 581, 619
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 373
BisI GCNGC 1 cut(s) 882
BlsI GCNGC 1 cut(s) 883
Bme1390I CCNGG 5 cut(s) 515, 516, 576, 581, 619
Bme18I GGWCC 2 cut(s) 535, 758
BmeRI GACNNNNNGTC 1 cut(s) 563
BmeT110I CYCGRG 2 cut(s) 115, 514
BmgT120I GGNCC 2 cut(s) 535, 758
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 5 cut(s) 515, 516, 576, 581, 619
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 3 cut(s) 227, 495, 528
BmuI ACTGGG 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 559
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 5 cut(s) 515, 516, 576, 581, 619
Bsa29I ATCGAT 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 513, 514, 574, 618
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 521, 580, 678
Bse1I ACTGG 2 cut(s) 238, 738
Bse3DI GCAATG 2 cut(s) 309, 751
Bse8I GATNNNNATC 1 cut(s) 639
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 4 cut(s) 513, 514, 574, 618
BseGI GGATG 2 cut(s) 242, 354
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 4 cut(s) 141, 521, 580, 678
BseMI GCAATG 2 cut(s) 309, 751
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 2 cut(s) 238, 738
BseRI GAGGAG 3 cut(s) 341, 449, 676
BseX3I CGGCCG 1 cut(s) 577
BseXI GCAGC 1 cut(s) 868
BseYI CCCAGC 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 580
BshFI GGCC 1 cut(s) 579
BshVI ATCGAT 1 cut(s) 732
BsiEI CGRYCG 1 cut(s) 580
BsiHKCI CYCGRG 2 cut(s) 115, 514
BsiSI CCGG 5 cut(s) 483, 515, 576, 580, 618
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 4 cut(s) 141, 521, 580, 678
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 1 cut(s) 579
BsoBI CYCGRG 2 cut(s) 115, 514
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
BspACI CCGC 6 cut(s) 300, 330, 385, 400, 538, 756
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 732
BspLI GGNNCC 1 cut(s) 365
BspPI GGATC 8 cut(s) 358, 371, 532, 547, 642, 689, 728, 737
BsrDI GCAATG 2 cut(s) 309, 751
BsrI ACTGG 2 cut(s) 238, 738
BssECI CCNNGG 4 cut(s) 513, 514, 574, 618
BssMI GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
BssNI GRCGYC 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 442, 866
BstACI GRCGYC 1 cut(s) 498
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 242, 354
BstKTI GATC 7 cut(s) 366, 527, 555, 637, 684, 732, 736
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
BstMCI CGRYCG 1 cut(s) 580
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 787, 819
BstSCI CCNGG 5 cut(s) 513, 514, 574, 579, 617
BstSFI CTRYAG 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 868
BstV2I GAAGAC 1 cut(s) 559
BstX2I RGATCY 2 cut(s) 363, 681
BstYI RGATCY 2 cut(s) 363, 681
BstZI CGGCCG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 732
BtsCI GGATG 2 cut(s) 242, 354
BtsI GCAGTG 2 cut(s) 201, 672
BtsIMutI CAGTG 4 cut(s) 201, 231, 672, 871
Cfr13I GGNCC 2 cut(s) 535, 758
Cfr9I CCCGGG 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 732
Csp6I GTAC 1 cut(s) 595
CviAII CATG 5 cut(s) 436, 472, 784, 816, 837
CviJI RGCY 8 cut(s) 113, 227, 378, 409, 511, 579, 629, 647
CviKI_1 RGCY 8 cut(s) 113, 227, 378, 409, 511, 579, 629, 647
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 1 cut(s) 531
DpnI GATC 7 cut(s) 365, 526, 554, 636, 683, 731, 735
DpnII GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
DraI TTTAAA 1 cut(s) 168
DrdI GACNNNNNNGTC 1 cut(s) 503
DriI GACNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 577
EagI CGGCCG 1 cut(s) 577
Eam1105I GACNNNNNGTC 1 cut(s) 563
EciI GGCGGA 2 cut(s) 374, 389
EclXI CGGCCG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 535, 758
Eco52I CGGCCG 1 cut(s) 577
Eco88I CYCGRG 2 cut(s) 115, 514
EcoRI GAATTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 513
FaeI CATG 5 cut(s) 439, 475, 787, 819, 840
FaqI GGGAC 1 cut(s) 635
FatI CATG 5 cut(s) 435, 471, 783, 815, 836
FblI GTMKAC 3 cut(s) 339, 444, 492
Fnu4HI GCNGC 1 cut(s) 882
FokI GGATG 2 cut(s) 249, 341
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 1 cut(s) 882
FspBI CTAG 1 cut(s) 26
GluI GCNGC 1 cut(s) 882
GsaI CCCAGC 1 cut(s) 681
HaeIII GGCC 1 cut(s) 579
HapII CCGG 5 cut(s) 483, 515, 576, 580, 618
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 5 cut(s) 439, 475, 787, 819, 840
HincII GTYRAC 2 cut(s) 340, 586
HindII GTYRAC 2 cut(s) 340, 586
HinfI GANTC 5 cut(s) 249, 396, 640, 797, 833
HpaII CCGG 5 cut(s) 483, 515, 576, 580, 618
HphI GGTGA 3 cut(s) 244, 423, 454
Hpy166II GTNNAC 4 cut(s) 340, 445, 493, 586
Hpy188I TCNGA 7 cut(s) 180, 319, 363, 524, 557, 639, 729
Hpy188III TCNNGA 4 cut(s) 143, 533, 632, 794
Hpy8I GTNNAC 4 cut(s) 340, 445, 493, 586
Hpy99I CGWCG 4 cut(s) 341, 500, 509, 566
HpyAV CCTTC 4 cut(s) 145, 368, 599, 652
HpyCH4III ACNGT 2 cut(s) 442, 866
HpyCH4IV ACGT 2 cut(s) 47, 498
HpyCH4V TGCA 3 cut(s) 206, 815, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 2 cut(s) 47, 498
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 5 cut(s) 439, 475, 787, 819, 840
Kzo9I GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
LmnI GCTCC 1 cut(s) 414
Lsp1109I GCAGC 1 cut(s) 868
LweI GCATC 3 cut(s) 227, 495, 528
MaeI CTAG 1 cut(s) 26
MaeII ACGT 2 cut(s) 47, 498
MalI GATC 7 cut(s) 365, 526, 554, 636, 683, 731, 735
MboI GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
MboII GAAGA 2 cut(s) 559, 842
MfeI CAATTG 1 cut(s) 17
MflI RGATCY 2 cut(s) 363, 681
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 9 cut(s) 9, 17, 32, 85, 181, 345, 745, 764, 775
MlyI GAGTC 2 cut(s) 243, 390
MmeI TCCRAC 3 cut(s) 236, 342, 580
MseI TTAA 5 cut(s) 53, 72, 167, 774, 889
MslI CAYNNNNRTG 2 cut(s) 302, 864
MspI CCGG 5 cut(s) 483, 515, 576, 580, 618
MspR9I CCNGG 5 cut(s) 515, 516, 576, 581, 619
MunI CAATTG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 384
NciI CCSGG 5 cut(s) 515, 516, 576, 581, 619
NdeII GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
NlaIII CATG 5 cut(s) 439, 475, 787, 819, 840
NlaIV GGNNCC 1 cut(s) 365
NspI RCATGY 2 cut(s) 787, 819
PciI ACATGT 1 cut(s) 783
PcsI WCGNNNNNNNCGW 3 cut(s) 495, 501, 504
PfeI GAWTC 3 cut(s) 640, 797, 833
PkrI GCNGC 1 cut(s) 883
PleI GAGTC 2 cut(s) 243, 390
PpsI GAGTC 2 cut(s) 243, 390
PscI ACATGT 1 cut(s) 783
PsiI TTATAA 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 677
PspN4I GGNNCC 1 cut(s) 365
PspPI GGNCC 2 cut(s) 535, 758
PsuI RGATCY 2 cut(s) 363, 681
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
RseI CAYNNNNRTG 2 cut(s) 302, 864
SalI GTCGAC 1 cut(s) 338
SaqAI TTAA 5 cut(s) 53, 72, 167, 774, 889
SatI GCNGC 1 cut(s) 882
Sau3AI GATC 7 cut(s) 363, 524, 552, 634, 681, 729, 733
Sau96I GGNCC 2 cut(s) 535, 758
SchI GAGTC 2 cut(s) 243, 390
ScrFI CCNGG 5 cut(s) 515, 516, 576, 581, 619
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 3 cut(s) 227, 495, 528
SfcI CTRYAG 1 cut(s) 373
SinI GGWCC 2 cut(s) 535, 758
SmaI CCCGGG 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 302, 864
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 9 cut(s) 9, 17, 32, 85, 181, 345, 745, 764, 775
SsiI CCGC 6 cut(s) 300, 330, 385, 400, 538, 756
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 5 cut(s) 513, 514, 574, 579, 617
TaaI ACNGT 2 cut(s) 442, 866
TaiI ACGT 2 cut(s) 50, 501
TaqI TCGA 6 cut(s) 339, 394, 507, 551, 603, 732
TasI AATT 9 cut(s) 9, 17, 32, 85, 181, 345, 745, 764, 775
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 3 cut(s) 640, 797, 833
Tru1I TTAA 5 cut(s) 53, 72, 167, 774, 889
Tru9I TTAA 5 cut(s) 53, 72, 167, 774, 889
TscAI CASTG 4 cut(s) 208, 238, 679, 871
TseI GCWGC 1 cut(s) 881
TspDTI ATGAA 2 cut(s) 460, 848
TspGWI ACGGA 1 cut(s) 325
TspMI CCCGGG 1 cut(s) 514
TspRI CASTG 4 cut(s) 208, 238, 679, 871
VpaK11BI GGWCC 2 cut(s) 535, 758
XapI RAATTY 1 cut(s) 181
XceI RCATGY 2 cut(s) 787, 819
XmaI CCCGGG 1 cut(s) 514
XmiI GTMKAC 3 cut(s) 339, 444, 492
XspI CTAG 1 cut(s) 26
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.