Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Forward (+)

18796418 .. 18800575

Gene Structure 4158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACTCACTCATTCGACGTCACTGTCTCCCAAAATAATACCTTTGCTTTCATCTCCGACGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACAGTCCGCCATGGACAACATTGGAGATGAGTACAAAAATTACTGGGAAACCAATATGTTCCTCCAAACCGAAGAGCTTGACAGCAGTTGGGGTTTGGATGAGGCGTTTTCGGGGTACTACGATTCGAGCTCGCCGGACGGAGCAGCTTCCTTCATGGCCTCCAAGAATATTGTGTCTGAGAGGAACAGGAGGAAAAAGCTCAATGAAAGGCTGTTTGCACTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGACAAGGCTTCTATAATCAAAGACGCTATTGACTATATCCAAGAGCTGCATGAACAAGAAAGAAGAATTCAAACAGAGATAGTTGAGCTTGAATCTGGAAAATCAAATAAAAAGTTGGGTTCCGATTTCGAACAAGACCTACCGGTCCTGTTGAGGTCAAAGAAGAAGAAAATCGAGCACCTCTATGACTGTGGAGAATCAAGAATTTCCACAATCGAAATCCTCGAGCTTAGGGTTACATACATGGGTGAAAAGACGTTGGTGGTGAGCTTGACATGCAGTAAAAGAACGGACACAATGGTAAAATTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAAATCATTACCGCGAATATTACTGCTTTCTCCGGAAGGGTCTCGAAGACGGTCATCGTTGAGGCAGACGAAGAAGAAAAGGATCGATCTGAAGATAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

267

Amino Acids

30.14

Weight (kDa)

5.09

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	93 - 137	5.6e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	196 - 257	2.2e-21	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 503
AatII	GACGTC	1 cut(s)	21
AccII	CGCG	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	2 cut(s)	114, 708
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	426, 564
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	2 cut(s)	140, 224
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	431, 452, 691
AluBI	AGCT	9 cut(s)	184, 237, 254, 307, 406, 448, 589, 630, 694
AluI	AGCT	9 cut(s)	184, 237, 254, 307, 406, 448, 589, 630, 694
Alw21I	GWGCWC	2 cut(s)	239, 540
Alw26I	GTCTC	2 cut(s)	31, 742
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	584
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	251, 406
ApoI	RAATTY	2 cut(s)	426, 564
AsiGI	ACCGGT	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	340, 505
AsuHPI	GGTGA	2 cut(s)	620, 637
AsuII	TTCGAA	2 cut(s)	489, 681
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	2 cut(s)	340, 505
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	749
Bbv12I	GWGCWC	2 cut(s)	239, 540
BbvI	GCAGC	2 cut(s)	263, 393
BccI	CCATC	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	31, 742
BfmI	CTRYAG	1 cut(s)	107
BisI	GCNGC	2 cut(s)	252, 407
BlsI	GCNGC	2 cut(s)	253, 408
Bme18I	GGWCC	2 cut(s)	340, 505
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	340, 505
BmiI	GGNNCC	2 cut(s)	342, 481
BmrI	ACTGGG	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	590
Bpu14I	TTCGAA	2 cut(s)	489, 681
Bsa29I	ATCGAT	1 cut(s)	781
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	2 cut(s)	502, 728
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	728
BseCI	ATCGAT	1 cut(s)	781
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	263, 393
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	266
BshTI	ACCGGT	1 cut(s)	502
BshVI	ATCGAT	1 cut(s)	781
BsiHKAI	GWGCWC	2 cut(s)	239, 540
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	242, 503, 729
BslFI	GGGAC	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	31, 742
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	742
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	2 cut(s)	489, 681
Bsp1286I	GDGCHC	2 cut(s)	239, 540
Bsp13I	TCCGGA	1 cut(s)	728
Bsp143I	GATC	2 cut(s)	778, 782
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	2 cut(s)	114, 708
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	277
BspDI	ATCGAT	1 cut(s)	781
BspEI	TCCGGA	1 cut(s)	728
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	2 cut(s)	342, 481
BspPI	GGATC	1 cut(s)	786
BspQI	GCTCTTC	1 cut(s)	174
BspT104I	TTCGAA	2 cut(s)	489, 681
BspTNI	GGTCTC	1 cut(s)	742
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	778, 782
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	4 cut(s)	25, 111, 551, 748
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	18
BstBI	TTCGAA	2 cut(s)	489, 681
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	285, 329, 590
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	710
BstKTI	GATC	2 cut(s)	781, 785
BstMAI	GTCTC	2 cut(s)	31, 742
BstMBI	GATC	2 cut(s)	778, 782
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 636
BstNSI	RCATGY	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	263, 393
BstV2I	GAAGAC	1 cut(s)	749
Bsu15I	ATCGAT	1 cut(s)	781
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	21, 342
Cac8I	GCNNGC	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	340, 505
ClaI	ATCGAT	1 cut(s)	781
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	139, 223
CspAI	ACCGGT	1 cut(s)	502
CviAII	CATG	5 cut(s)	118, 262, 410, 604, 636
CviQI	GTAC	2 cut(s)	139, 223
DdeI	CTNAG	3 cut(s)	285, 329, 590
DpnI	GATC	2 cut(s)	780, 784
DpnII	GATC	2 cut(s)	778, 782
DrdI	GACNNNNNNGTC	2 cut(s)	23, 503
DseDI	GACNNNNNNGTC	2 cut(s)	23, 503
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	742
Eco47I	GGWCC	2 cut(s)	340, 505
Eco53kI	GAGCTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	5 cut(s)	121, 265, 413, 607, 639
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	5 cut(s)	117, 261, 409, 603, 635
Fnu4HI	GCNGC	2 cut(s)	252, 407
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	252, 407
GluI	GCNGC	2 cut(s)	252, 407
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	3 cut(s)	242, 503, 729
HgaI	GACGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	121, 265, 413, 607, 639
HinfI	GANTC	6 cut(s)	4, 63, 230, 452, 557, 683
HpaII	CCGG	3 cut(s)	242, 503, 729
HphI	GGTGA	2 cut(s)	620, 637
Hpy188I	TCNGA	4 cut(s)	58, 286, 484, 787
Hpy188III	TCNNGA	4 cut(s)	456, 561, 729, 739
Hpy99I	CGWCG	2 cut(s)	20, 62
HpyAV	CCTTC	2 cut(s)	268, 726
HpyCH4III	ACNGT	4 cut(s)	25, 111, 551, 748
HpyCH4IV	ACGT	2 cut(s)	18, 617
HpyCH4V	TGCA	3 cut(s)	326, 409, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 636
HpyF3I	CTNAG	3 cut(s)	285, 329, 590
HpySE526I	ACGT	2 cut(s)	18, 617
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	121, 265, 413, 607, 639
Kpn2I	TCCGGA	1 cut(s)	728
Kzo9I	GATC	2 cut(s)	778, 782
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	7 cut(s)	136, 255, 280, 441, 516, 521, 742
Lsp1109I	GCAGC	2 cut(s)	263, 393
MaeII	ACGT	2 cut(s)	18, 617
MaeIII	GTNAC	2 cut(s)	19, 595
MalI	GATC	2 cut(s)	780, 784
MboI	GATC	2 cut(s)	778, 782
MboII	GAAGA	8 cut(s)	191, 435, 535, 538, 754, 779, 782, 800
MhlI	GDGCHC	2 cut(s)	239, 540
MluCI	AATT	5 cut(s)	145, 426, 564, 665, 796
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	728
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	3 cut(s)	242, 503, 729
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	332, 636
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	2 cut(s)	778, 782
NlaIII	CATG	5 cut(s)	121, 265, 413, 607, 639
NlaIV	GGNNCC	2 cut(s)	342, 481
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	639
NspV	TTCGAA	2 cut(s)	489, 681
PaeR7I	CTCGAG	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PfeI	GAWTC	4 cut(s)	230, 452, 557, 683
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	253, 408
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	342, 481
PspPI	GGNCC	2 cut(s)	340, 505
PspXI	VCTCGAGB	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
RsaI	GTAC	2 cut(s)	140, 224
RsaNI	GTAC	2 cut(s)	139, 223
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	174
SatI	GCNGC	2 cut(s)	252, 407
Sau3AI	GATC	2 cut(s)	778, 782
Sau96I	GGNCC	2 cut(s)	340, 505
SchI	GAGTC	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	239, 540
SfcI	CTRYAG	1 cut(s)	107
Sfr274I	CTCGAG	1 cut(s)	584
SfuI	TTCGAA	2 cut(s)	489, 681
SinI	GGWCC	2 cut(s)	340, 505
SlaI	CTCGAG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	145, 426, 564, 665, 796
SsiI	CCGC	2 cut(s)	114, 708
SspI	AATATT	2 cut(s)	277, 715
SstI	GAGCTC	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	4 cut(s)	25, 111, 551, 748
TaiI	ACGT	2 cut(s)	21, 620
TaqI	TCGA	9 cut(s)	15, 233, 489, 534, 576, 585, 681, 740, 781
TasI	AATT	5 cut(s)	145, 426, 564, 665, 796
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	230, 452, 557, 683
TscAI	CASTG	2 cut(s)	28, 342
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	251, 406
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	40, 250, 327, 426
TspGWI	ACGGA	3 cut(s)	75, 261, 665
TspRI	CASTG	2 cut(s)	28, 342
VpaK11BI	GGWCC	2 cut(s)	340, 505
XapI	RAATTY	2 cut(s)	426, 564
XceI	RCATGY	1 cut(s)	639
XhoI	CTCGAG	1 cut(s)	584
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.