Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Reverse (-)

23110666 .. 23111249

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCATCTTTCAGTAGATTGGGAATTAGGTTGAGCATAGTTTTTGGGTGCCTACGATTGGCACTTGTTGCAGAGCTTTACTACCAGCTATGGTGGAAGAAGAGAATCACCAACAAAGATATTGAGGAAGAAGAATATGATGATTACATCATCAACCACACAAAGGAAATCTTCCAATTTAATTGCTTCAAAAAACATAATTCTTTTTCACACAGCAATTTGGAGCTAGGTTCGAACAAGGATTTTCTGTTAAAGCTCAATGAGAAAGAAAATGTGGAAATCTCAAAGCTGATGAGGCTGCACAATCTGGCTGGCCCAACAAGGTTTTTGTTCACAATCAAAGAGGAAGAAAATGAGGATTTGGAATCAGAAGATGGGAAATCTAGAAGTAGCAGAAAAGGGTCAAGAACTAGAAGTTTAGGCGATCTGATTTTGGCAGTGGGCACACCTTTTCTCTCCCCTATGTCTTCCTCGTCGATGGGGCCTGCTAATGCAGGTAGTGGGATCCCAGCTAGTGCACACAATCAATTTTTGGATACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.47

Weight (kDa)

6.53

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	499, 512
AfiI	CCNNNNNNNGG	2 cut(s)	58, 163
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	6 cut(s)	76, 88, 226, 256, 289, 512
AluI	AGCT	6 cut(s)	76, 88, 226, 256, 289, 512
Alw21I	GWGCWC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	499, 512
AoxI	GGCC	2 cut(s)	313, 482
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	314, 482
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	233
BaeGI	GKGCMC	2 cut(s)	446, 520
BamHI	GGATCC	1 cut(s)	504
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	2 cut(s)	368, 472
BciVI	GTATCC	1 cut(s)	529
BfaI	CTAG	5 cut(s)	227, 384, 411, 513, 541
BfuAI	ACCTGC	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	314, 482
BmiI	GGNNCC	3 cut(s)	50, 483, 506
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 163
BseLI	CCNNNNNNNGG	2 cut(s)	58, 163
BseSI	GKGCMC	2 cut(s)	446, 520
BseXI	GCAGC	1 cut(s)	285
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	315, 484
BshNI	GGYRCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	58, 163
BsnI	GGCC	2 cut(s)	315, 484
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	446, 520
Bsp143I	GATC	2 cut(s)	424, 504
BspANI	GGCC	2 cut(s)	315, 484
BspLI	GGNNCC	3 cut(s)	50, 483, 506
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	2 cut(s)	499, 512
BspT104I	TTCGAA	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	48
BssMI	GATC	2 cut(s)	424, 504
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	313, 486
BstKTI	GATC	2 cut(s)	427, 507
BstMBI	GATC	2 cut(s)	424, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 295
BstSLI	GKGCMC	2 cut(s)	446, 520
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	315, 484
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	313, 486
Cfr13I	GGNCC	2 cut(s)	314, 482
DpnI	GATC	2 cut(s)	426, 506
DpnII	GATC	2 cut(s)	424, 504
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	482
FaiI	YATR	5 cut(s)	38, 91, 138, 198, 464
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
Fnu4HI	GCNGC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	5 cut(s)	227, 384, 411, 513, 541
GluI	GCNGC	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	512
HaeIII	GGCC	2 cut(s)	315, 484
HinfI	GANTC	2 cut(s)	105, 365
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	333, 518
Hpy188I	TCNGA	2 cut(s)	370, 429
Hpy188III	TCNNGA	2 cut(s)	384, 405
Hpy8I	GTNNAC	2 cut(s)	333, 518
Hpy99I	CGWCG	1 cut(s)	478
HpyCH4V	TGCA	4 cut(s)	71, 301, 494, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 295
Kzo9I	GATC	2 cut(s)	424, 504
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	98, 293, 297, 480, 498, 522
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	5 cut(s)	227, 384, 411, 513, 541
MalI	GATC	2 cut(s)	426, 506
MboI	GATC	2 cut(s)	424, 504
MboII	GAAGA	8 cut(s)	109, 112, 140, 143, 163, 359, 383, 459
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	446, 520
MluCI	AATT	6 cut(s)	24, 176, 181, 199, 217, 527
MnlI	CCTC	5 cut(s)	118, 288, 337, 349, 481
MseI	TTAA	2 cut(s)	180, 251
MwoI	GCNNNNNNNGC	2 cut(s)	68, 295
NdeII	GATC	2 cut(s)	424, 504
NlaIV	GGNNCC	3 cut(s)	50, 483, 506
NspV	TTCGAA	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	105, 365
PkrI	GCNGC	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	50, 483, 506
PspPI	GGNCC	2 cut(s)	314, 482
PsuI	RGATCY	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	180, 251
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	2 cut(s)	424, 504
Sau96I	GGNCC	2 cut(s)	314, 482
SduI	GDGCHC	2 cut(s)	446, 520
SfaNI	GCATC	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	233
Sse9I	AATT	6 cut(s)	24, 176, 181, 199, 217, 527
SspMI	CTAG	5 cut(s)	227, 384, 411, 513, 541
TaqI	TCGA	2 cut(s)	233, 476
TasI	AATT	6 cut(s)	24, 176, 181, 199, 217, 527
TfiI	GAWTC	2 cut(s)	105, 365
Tru1I	TTAA	2 cut(s)	180, 251
Tru9I	TTAA	2 cut(s)	180, 251
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	1 cut(s)	298
TspRI	CASTG	1 cut(s)	444
VneI	GTGCAC	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	383
XspI	CTAG	5 cut(s)	227, 384, 411, 513, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.