pycom16g23190

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012281
Physical Location & Seq
Forward (+)
23838595 .. 23840245
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1521 bp
ATGCAGGTTTGGTTTGTAGTCAACCAGAACAAGTTAAAGAAGAAGATTTGCAGGTTGGTGGATTTATTGGCTTTTCAAATCTCACCTGTGTCACCATTTATTTCCATCTTTCACATTCAATATTTCCTCTCTCCTCTCTCTCTCTCTCTCTCTCAATATTTCAATTTGCAACACATGACACCAAGCCTATACAACTTTTTTGGATGTTTTGGACTCGGACTTGTTTCCACTCAAAGCTGCAATCTTGGGGAGCTCATTGTTCCAAACCCAACCTTTTCTCCTTGGAAAAAACAAAAACAAAAAATGGTGTGGATGTGGAAGCTCCTCGAAATCAAAGAAAATGGGGTTTCTTCAATTCCCACATTCCCACCATACTTTGTTCCTCAGCTTCCTCCCCCACCCCCAAATCTCCAATCAAATAGTTTGAGTTTTGGGAACAAAGTCAGTCCAAGCATACTGCTAATAATCATAATAGTAGCCACTGTTTTCTTTGTTTCTGTGCTGCTCCACCTCCTTGTTAGATTCCTCCTGAGGCCTCCAGCCAGAGATTCAGAGGACTTGGAGAGTGTGACAGTTCTCCAAGGGCAACTGCAGCAACTGTTCCGCCTTCATGATGCAGGCGTCGACCAGTCCTTCATAGACGGCCTCCCTTTCTTCCACTACAAAGCCATCATTGGATTGAAAAACCCTTTTGATTGTGCTGTCTGTTTGTGTGAGTTTGAGGCTGAGGATAACCTTAGATTGCTCCCCAAATGCAGCCATGCCTTCCACATGAAGTGCATTGACACTTGGCTCTTGTCTCACTCCACTTGCCCTCTCTGTAGAGCTACTTTGCTCCCTGATTTCTCGCGCAGCAATGGCTGCTCACCCATTGTTCTTGTTCTTGAATCTGGGAGTGACAGCTCCAGAGAGATGGTCTCTGATAGAGATGGACTCACTTCCAATCTGGGTTTTCATGGAGATATTGAATTGGGGTTGTCATACAAATCTTGCGAAACTGTGGCGAAAAATGAGGCTAACACGGCGGTGATGGTGGATTCTGGGAAAAAGGTAGTGCCTGTGAAGCTTGGGAAGTTCAGAAATGTGGATAGTGGGGGTGAGGGGAGTAGTGACAGCAATGTGGATTCAAGGAGGTGCTTTTCTATGGGCTCATTTGCGTATGTGATGGATGACAAATCTGAATTGCGAGTACCGATTAGAGCCTCGATGAAAAGGCAAGCAATGTCGGAATGCGATTGTGAGTCGAAGAGAGAATTCAAGTTTAGTGGGGTTGAAGCAATTGGAAGCCTTGAAACTCAAGGAACTAGAACTGGTGCTAGTAGTACTAATGGCAGTGGCAGTAATGGCATTGGGAGGAGCATGCGGGAGAGCTTCTCGATATCGAAGATTTGGCTTATGGGGAAGAAGGAGAAGCCAAATGGGGCGGCAGATTCGTCACGAAGGGCCTTTTCATTTCGCTTTCCAGTGCACCAGAGTGCGGTGGCGGCAGAGGAGGGAGCGAAGGCAGAATGTTGGGAGTGA

Protein Analysis

507

Amino Acids

56.13

Weight (kDa)

8.39

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 228 - 275 9.2e-10 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 230 - 277 1.4e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 232 - 275 5e-14 Ring finger domain
zf-RING_11 PF17123 232 - 261 4e-10 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18650 AT4G30400
fragaria_vesca FvH4_4g09580 FvH4_4g09580
malus_domestica MD13G1260900.v1.1 MD16G1263000.v1.1
prunus_persica Prupe.1G097100_v2.0.a1
pyrus_communis pycom16g23190
rosa_chinensis RchiOBHm_Chr4g0404881
rosa_laevigata RLG00000008897
rosa_multiflora Rmu_sc0001179.1_g000015
rosa_roxburghii Rroxscaffold_5G00349010
rosa_rugosa Rorug04G0049700 Rorug04G0049700
rosa_samantha Rh4AG125700 Rh4BG119500 Rh4CG133900 Rh4DG119300
rosa_wichuraiana Rw4G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 624
AccII CGCG 1 cut(s) 850
AciI CCGC 6 cut(s) 604, 1025, 1363, 1424, 1478, 1484
AcsI RAATTY 1 cut(s) 1253
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 2 cut(s) 1191, 1324
AfiI CCNNNNNNNGG 1 cut(s) 1477
AleI CACNNNNGTG 2 cut(s) 1025, 1473
AluBI AGCT 8 cut(s) 237, 253, 322, 388, 827, 903, 1066, 1371
AluI AGCT 8 cut(s) 237, 253, 322, 388, 827, 903, 1066, 1371
Alw21I GWGCWC 2 cut(s) 255, 1470
Alw26I GTCTC 2 cut(s) 804, 922
Alw44I GTGCAC 1 cut(s) 1466
AlwNI CAGNNNCTG 1 cut(s) 598
AoxI GGCC 3 cut(s) 533, 643, 1443
ApaLI GTGCAC 1 cut(s) 1466
ApeKI GCWGC 6 cut(s) 237, 502, 592, 756, 852, 861
ApoI RAATTY 1 cut(s) 1253
AspLEI GCGC 1 cut(s) 852
AspS9I GGNCC 1 cut(s) 1443
AsuHPI GGTGA 5 cut(s) 75, 84, 858, 1039, 1109
AxyI CCTNAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 1470
BanII GRGCYC 2 cut(s) 255, 1151
Bbv12I GWGCWC 2 cut(s) 255, 1470
BbvCI CCTCAGC 2 cut(s) 384, 726
BbvI GCAGC 6 cut(s) 224, 489, 604, 768, 848, 864
BccI CCATC 6 cut(s) 113, 677, 907, 923, 1024, 1159
BceAI ACGGC 2 cut(s) 658, 1038
BcoDI GTCTC 2 cut(s) 804, 922
BfaI CTAG 2 cut(s) 1305, 1317
BfmI CTRYAG 2 cut(s) 590, 820
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 8 cut(s) 238, 503, 593, 757, 853, 862, 1425, 1485
BlsI GCNGC 8 cut(s) 239, 504, 594, 758, 854, 863, 1426, 1486
BmcAI AGTACT 1 cut(s) 1324
BmgT120I GGNCC 1 cut(s) 1443
BmsI GCATC 1 cut(s) 604
BplI GAGNNNNNCTC 6 cut(s) 902, 934, 918, 950, 1358, 1390
BpmI CTGGAG 2 cut(s) 522, 889
Bpu10I CCTNAGC 2 cut(s) 384, 726
BpuEI CTTGAG 1 cut(s) 1281
BsaHI GRCGYC 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 922
BsaJI CCNNGG 2 cut(s) 281, 580
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 1477
Bse1I ACTGG 3 cut(s) 628, 1315, 1463
Bse21I CCTNAGG 1 cut(s) 530
Bse3DI GCAATG 3 cut(s) 862, 1123, 1227
BseDI CCNNGG 2 cut(s) 281, 580
BseGI GGATG 3 cut(s) 209, 318, 1174
BseLI CCNNNNNNNGG 1 cut(s) 1477
BseMI GCAATG 3 cut(s) 862, 1123, 1227
BseMII CTCAG 3 cut(s) 398, 521, 717
BseNI ACTGG 3 cut(s) 628, 1315, 1463
BseRI GAGGAG 4 cut(s) 123, 314, 1369, 1505
BseSI GKGCMC 1 cut(s) 1470
BseXI GCAGC 6 cut(s) 224, 489, 604, 768, 848, 864
Bsh1236I CGCG 1 cut(s) 850
BshFI GGCC 3 cut(s) 535, 645, 1445
BsiHKAI GWGCWC 2 cut(s) 255, 1470
BslI CCNNNNNNNGG 1 cut(s) 1477
BsmAI GTCTC 2 cut(s) 804, 922
BsmI GAATGC 1 cut(s) 1235
BsnI GGCC 3 cut(s) 535, 645, 1445
Bso31I GGTCTC 1 cut(s) 922
Bsp1286I GDGCHC 3 cut(s) 255, 1151, 1470
BspACI CCGC 6 cut(s) 604, 1025, 1363, 1424, 1478, 1484
BspANI GGCC 3 cut(s) 535, 645, 1445
BspCNI CTCAG 3 cut(s) 397, 522, 718
BspFNI CGCG 1 cut(s) 850
BspHI TCATGA 1 cut(s) 610
BspMAI CTGCAG 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 922
BsrDI GCAATG 3 cut(s) 862, 1123, 1227
BsrI ACTGG 3 cut(s) 628, 1315, 1463
BssECI CCNNGG 2 cut(s) 281, 580
BssNI GRCGYC 1 cut(s) 621
BssT1I CCWWGG 2 cut(s) 281, 580
Bst4CI ACNGT 4 cut(s) 484, 574, 600, 1000
Bst6I CTCTTC 1 cut(s) 1241
BstACI GRCGYC 1 cut(s) 621
BstAPI GCANNNNNTGC 1 cut(s) 861
BstC8I GCNNGC 3 cut(s) 619, 1218, 1361
BstDEI CTNAG 4 cut(s) 384, 530, 726, 737
BstF5I GGATG 3 cut(s) 209, 318, 1174
BstFNI CGCG 1 cut(s) 850
BstHHI GCGC 1 cut(s) 852
BstMAI GTCTC 2 cut(s) 804, 922
BstMWI GCNNNNNNNGC 7 cut(s) 592, 858, 861, 1022, 1063, 1344, 1484
BstNSI RCATGY 1 cut(s) 1363
BstSFI CTRYAG 2 cut(s) 590, 820
BstSLI GKGCMC 1 cut(s) 1470
BstUI CGCG 1 cut(s) 850
BstV1I GCAGC 6 cut(s) 224, 489, 604, 768, 848, 864
BstXI CCANNNNNNTGG 1 cut(s) 913
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 3 cut(s) 535, 645, 1445
BtsCI GGATG 3 cut(s) 209, 318, 1174
BtsI GCAGTG 1 cut(s) 1339
BtsIMutI CAGTG 3 cut(s) 480, 1339, 1470
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 619, 1218, 1361
CaiI CAGNNNCTG 1 cut(s) 598
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 852
Cfr13I GGNCC 1 cut(s) 1443
CseI GACGC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 1190, 1323
CspCI CAANNNNNGTGG 2 cut(s) 1246, 1281
CviAII CATG 6 cut(s) 175, 611, 761, 772, 956, 1360
CviQI GTAC 2 cut(s) 1190, 1323
DdeI CTNAG 4 cut(s) 384, 530, 726, 737
Eam1104I CTCTTC 1 cut(s) 1241
EarI CTCTTC 1 cut(s) 1241
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 281, 580
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 2 cut(s) 255, 1151
Eco31I GGTCTC 1 cut(s) 922
Eco32I GATATC 1 cut(s) 1380
Eco53kI GAGCTC 1 cut(s) 253
Eco81I CCTNAGG 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 1443
EcoRI GAATTC 1 cut(s) 1253
EcoRV GATATC 1 cut(s) 1380
EcoT14I CCWWGG 2 cut(s) 281, 580
EcoT38I GRGCYC 2 cut(s) 255, 1151
ErhI CCWWGG 2 cut(s) 281, 580
FaeI CATG 6 cut(s) 178, 614, 764, 775, 959, 1363
FatI CATG 6 cut(s) 174, 610, 760, 771, 955, 1359
FauI CCCGC 1 cut(s) 1356
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 8 cut(s) 238, 503, 593, 757, 853, 862, 1425, 1485
FokI GGATG 3 cut(s) 216, 325, 1181
FriOI GRGCYC 2 cut(s) 255, 1151
Fsp4HI GCNGC 8 cut(s) 238, 503, 593, 757, 853, 862, 1425, 1485
FspBI CTAG 2 cut(s) 1305, 1317
GlaI GCGC 1 cut(s) 851
GluI GCNGC 8 cut(s) 238, 503, 593, 757, 853, 862, 1425, 1485
GsuI CTGGAG 2 cut(s) 522, 889
HaeIII GGCC 3 cut(s) 535, 645, 1445
HgaI GACGC 1 cut(s) 610
HhaI GCGC 1 cut(s) 852
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 6 cut(s) 178, 614, 764, 775, 959, 1363
Hin6I GCGC 1 cut(s) 850
HinP1I GCGC 1 cut(s) 850
HincII GTYRAC 2 cut(s) 22, 625
HindII GTYRAC 2 cut(s) 22, 625
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 9 cut(s) 213, 522, 548, 887, 933, 1037, 1124, 1241, 1430
HphI GGTGA 5 cut(s) 75, 84, 858, 1039, 1109
Hpy166II GTNNAC 3 cut(s) 22, 625, 1468
Hpy188I TCNGA 6 cut(s) 218, 553, 922, 1079, 1180, 1228
Hpy188III TCNNGA 6 cut(s) 529, 611, 884, 906, 1375, 1437
Hpy8I GTNNAC 3 cut(s) 22, 625, 1468
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 6 cut(s) 617, 643, 775, 1399, 1434, 1495
HpyCH4III ACNGT 4 cut(s) 484, 574, 600, 1000
HpyCH4V TGCA 9 cut(s) 4, 51, 169, 240, 592, 617, 756, 780, 1468
HpyF10VI GCNNNNNNNGC 7 cut(s) 592, 858, 861, 1022, 1063, 1344, 1484
HpyF3I CTNAG 4 cut(s) 384, 530, 726, 737
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 6 cut(s) 178, 614, 764, 775, 959, 1363
HspAI GCGC 1 cut(s) 850
LmnI GCTCC 8 cut(s) 250, 327, 510, 750, 840, 908, 1356, 1496
Lsp1109I GCAGC 6 cut(s) 224, 489, 604, 768, 848, 864
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 1305, 1317
MaeIII GTNAC 5 cut(s) 90, 568, 896, 1109, 1434
MboII GAAGA 7 cut(s) 52, 55, 342, 646, 1258, 1396, 1414
MfeI CAATTG 1 cut(s) 1278
MhlI GDGCHC 3 cut(s) 255, 1151, 1470
MluCI AATT 6 cut(s) 163, 354, 968, 1181, 1253, 1278
MlyI GAGTC 3 cut(s) 207, 927, 1250
MmeI TCCRAC 1 cut(s) 1206
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 2 cut(s) 1025, 1473
MunI CAATTG 1 cut(s) 1278
Mva1269I GAATGC 1 cut(s) 1235
MvnI CGCG 1 cut(s) 850
MwoI GCNNNNNNNGC 7 cut(s) 592, 858, 861, 1022, 1063, 1344, 1484
NlaIII CATG 6 cut(s) 178, 614, 764, 775, 959, 1363
NmuCI GTSAC 5 cut(s) 90, 568, 896, 1109, 1434
NspI RCATGY 1 cut(s) 1363
OliI CACNNNNGTG 2 cut(s) 1025, 1473
PaeI GCATGC 1 cut(s) 1363
PagI TCATGA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 535
PctI GAATGC 1 cut(s) 1235
PfeI GAWTC 6 cut(s) 522, 548, 887, 1037, 1124, 1430
PkrI GCNGC 8 cut(s) 239, 504, 594, 758, 854, 863, 1426, 1486
PleI GAGTC 3 cut(s) 207, 927, 1249
PpsI GAGTC 3 cut(s) 207, 927, 1249
Psp124BI GAGCTC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 1443
PstI CTGCAG 1 cut(s) 594
PstNI CAGNNNCTG 1 cut(s) 598
RsaI GTAC 2 cut(s) 1191, 1324
RsaNI GTAC 2 cut(s) 1190, 1323
RseI CAYNNNNRTG 2 cut(s) 1025, 1473
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 8 cut(s) 238, 503, 593, 757, 853, 862, 1425, 1485
Sau96I GGNCC 1 cut(s) 1443
ScaI AGTACT 1 cut(s) 1324
SchI GAGTC 3 cut(s) 207, 927, 1250
SduI GDGCHC 3 cut(s) 255, 1151, 1470
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 2 cut(s) 590, 820
SmiMI CAYNNNNRTG 2 cut(s) 1025, 1473
SmlI CTYRAG 1 cut(s) 1296
SmoI CTYRAG 1 cut(s) 1296
SphI GCATGC 1 cut(s) 1363
Sse9I AATT 6 cut(s) 163, 354, 968, 1181, 1253, 1278
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 6 cut(s) 604, 1025, 1363, 1424, 1478, 1484
SspI AATATT 2 cut(s) 122, 158
SspMI CTAG 2 cut(s) 1305, 1317
SstI GAGCTC 1 cut(s) 255
StuI AGGCCT 1 cut(s) 535
StyI CCWWGG 2 cut(s) 281, 580
TaaI ACNGT 4 cut(s) 484, 574, 600, 1000
TaqI TCGA 6 cut(s) 327, 624, 1205, 1244, 1376, 1382
TasI AATT 6 cut(s) 163, 354, 968, 1181, 1253, 1278
TatI WGTACW 1 cut(s) 1322
TauI GCSGC 2 cut(s) 1427, 1487
TfiI GAWTC 6 cut(s) 522, 548, 887, 1037, 1124, 1430
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 3 cut(s) 487, 1339, 1470
TseFI GTSAC 5 cut(s) 90, 568, 896, 1109, 1434
TseI GCWGC 6 cut(s) 237, 502, 592, 756, 852, 861
Tsp45I GTSAC 5 cut(s) 90, 568, 896, 1109, 1434
TspDTI ATGAA 6 cut(s) 599, 625, 788, 944, 1223, 1440
TspRI CASTG 3 cut(s) 487, 1339, 1470
VneI GTGCAC 1 cut(s) 1466
XapI RAATTY 1 cut(s) 1253
XceI RCATGY 1 cut(s) 1363
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 2 cut(s) 1305, 1317
ZrmI AGTACT 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.